mRNA_L-elsbetiae_contig803.17018.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig803.17018.1
Unique NamemRNA_L-elsbetiae_contig803.17018.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig803.17018.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig803contigL-elsbetiae_contig803:3392..3846 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size455
Cds size309
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig803.17018.1prot_L-elsbetiae_contig803.17018.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig803 3520..3828 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816888.1171267-UTR-L-elsbetiae_contig803:3391..35191622816888.1171267-UTR-L-elsbetiae_contig803:3391..3519Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig803 3392..3519 +
1691683888.6176624-UTR-L-elsbetiae_contig803:3391..35191691683888.6176624-UTR-L-elsbetiae_contig803:3391..3519Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig803 3392..3519 +
1622816888.1455307-UTR-L-elsbetiae_contig803:3828..38461622816888.1455307-UTR-L-elsbetiae_contig803:3828..3846Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig803 3829..3846 +
1691683888.6360683-UTR-L-elsbetiae_contig803:3828..38461691683888.6360683-UTR-L-elsbetiae_contig803:3828..3846Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig803 3829..3846 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816888.1320045-CDS-L-elsbetiae_contig803:3519..38281622816888.1320045-CDS-L-elsbetiae_contig803:3519..3828Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig803 3520..3828 +
1691683888.6273358-CDS-L-elsbetiae_contig803:3519..38281691683888.6273358-CDS-L-elsbetiae_contig803:3519..3828Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig803 3520..3828 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig803.17018.1

>prot_L-elsbetiae_contig803.17018.1 ID=prot_L-elsbetiae_contig803.17018.1|Name=mRNA_L-elsbetiae_contig803.17018.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=103bp
MPPLYVLPTCTLLPSHALTRVLRIYAFAAFVVKIVDLSQCFLATALTNTY
THVWGVGVWERRCFLYPYCSISIPIRLVSETICWGCPALSFLLGCFLCCR
PD*
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mRNA from alignment at L-elsbetiae_contig803:3392..3846+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig803.17018.1 ID=mRNA_L-elsbetiae_contig803.17018.1|Name=mRNA_L-elsbetiae_contig803.17018.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=455bp|location=Sequence derived from alignment at L-elsbetiae_contig803:3392..3846+ (Laminarionema elsbetiae ELsaHSoW15)
CATGGATTAGCCTCAGTTTCCTATTTTCGGCCGAAGCACCAGCCTACGTA
GACTATATAGATATAGACTAGTCTACATAGTAGCAGCTGGTTTTCTTGGT
CCTTGCAGCATATCGCTTGTTTTATTAAATGCCGCCTCTCTATGTACTTC
CGACTTGTACGCTGCTTCCGTCACACGCGCTCACTCGTGTTTTACGTATC
TATGCATTTGCTGCGTTTGTTGTCAAGATTGTTGATCTCTCACAGTGTTT
TCTTGCCACGGCCCTGACAAACACATACACACATGTGTGGGGGGTAGGCG
TGTGGGAGAGGAGGTGTTTCTTATACCCATACTGCAGTATCTCTATTCCG
ATTAGACTTGTTTCTGAGACTATTTGTTGGGGCTGTCCTGCGCTCAGTTT
CTTGTTGGGGTGTTTCTTATGTTGTCGTCCAGATTGAGCTATGTTTCTTA
AGCCC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig803:3392..3846+

>mRNA_L-elsbetiae_contig803.17018.1 ID=mRNA_L-elsbetiae_contig803.17018.1|Name=mRNA_L-elsbetiae_contig803.17018.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=618bp|location=Sequence derived from alignment at L-elsbetiae_contig803:3392..3846+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCCGCCTCTCTATGTACTTCCGACTTGTACGCTGCTTCCGTCACACGC
GCTCACTCGTGTTTTACGTATCTATGCATTTGCTGCGTTTGTTGTCAAGA
TTGTTGATCTCTCACAGTGTTTTCTTGCCACGGCCCTGACAAACACATAC
ACACATGTGTGGGGGGTAGGCGTGTGGGAGAGGAGGTGTTTCTTATACCC
ATACTGCAGTATCTCTATTCCGATTAGACTTGTTTCTGAGACTATTTGTT
GGGGCTGTCCTGCGCTCAGTTTCTTGTTGGGGTGTTTCTTATGTTGTCGT
CCAGATTGAATGCCGCCTCTCTATGTACTTCCGACTTGTACGCTGCTTCC
GTCACACGCGCTCACTCGTGTTTTACGTATCTATGCATTTGCTGCGTTTG
TTGTCAAGATTGTTGATCTCTCACAGTGTTTTCTTGCCACGGCCCTGACA
AACACATACACACATGTGTGGGGGGTAGGCGTGTGGGAGAGGAGGTGTTT
CTTATACCCATACTGCAGTATCTCTATTCCGATTAGACTTGTTTCTGAGA
CTATTTGTTGGGGCTGTCCTGCGCTCAGTTTCTTGTTGGGGTGTTTCTTA
TGTTGTCGTCCAGATTGA
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