mRNA_L-elsbetiae_contig8028.17013.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig8028.17013.1
Unique NamemRNA_L-elsbetiae_contig8028.17013.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig8028.17013.1 vs. uniprot
Match: D7FPA3_ECTSI (Fumarylacetoacetate (FAA) hydrolase, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPA3_ECTSI)

HSP 1 Score: 179 bits (454), Expect = 1.110e-55
Identity = 91/110 (82.73%), Postives = 99/110 (90.00%), Query Frame = 1
Query:    1 GPIGALTPV--AEGGAVIAPAGLSEDEGERRIWLEVDGVKRQDSVLGEMVWSVPEMVARLSQLFTLEAGDVLFTGTPSGVAPLAVGEDVEARVEGLQPCRFRVGPLLPPS 324
            GPIGALTP   A+ G V A AGL+ DEG RRIWLEV G +RQDSVLGEMVWSVPEM+ARLS+LFTLEAGDVLFTGTPSGVAPLAVG+DVEARVEGL+PCRFRVGPLLPP+
Sbjct:   58 GPIGALTPTLPAKDGGVGAAAGLAGDEGGRRIWLEVGGGRRQDSVLGEMVWSVPEMIARLSELFTLEAGDVLFTGTPSGVAPLAVGDDVEARVEGLEPCRFRVGPLLPPT 167          
BLAST of mRNA_L-elsbetiae_contig8028.17013.1 vs. uniprot
Match: A0A6H5K6H3_9PHAE (FAA_hydrolase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6H3_9PHAE)

HSP 1 Score: 174 bits (442), Expect = 2.500e-52
Identity = 89/110 (80.91%), Postives = 97/110 (88.18%), Query Frame = 1
Query:    1 GPIGALT--PVAEGGAVIAPAGLSEDEGERRIWLEVDGVKRQDSVLGEMVWSVPEMVARLSQLFTLEAGDVLFTGTPSGVAPLAVGEDVEARVEGLQPCRFRVGPLLPPS 324
            GPIGALT  P A+GG V A AGL  DEG RRIWLEV G +RQDSVLGEMVWSVPEM+ARLS+LFTLEAGDVLFTGTP GVAPLAVG+DVEA VEGL+PCRFRVGP+LPP+
Sbjct:  176 GPIGALTTTPPAKGGGVGAAAGLVGDEGGRRIWLEVGGGRRQDSVLGEMVWSVPEMIARLSELFTLEAGDVLFTGTPKGVAPLAVGDDVEAGVEGLEPCRFRVGPVLPPT 285          
BLAST of mRNA_L-elsbetiae_contig8028.17013.1 vs. uniprot
Match: UPI001EF94E7A (fumarylacetoacetate hydrolase family protein n=1 Tax=Vitreimonas flagellata TaxID=2560861 RepID=UPI001EF94E7A)

HSP 1 Score: 97.1 bits (240), Expect = 6.480e-23
Identity = 47/86 (54.65%), Postives = 64/86 (74.42%), Query Frame = 1
Query:   46 IAPAGLSEDEGERRIWLEVDGVKRQDSVLGEMVWSVPEMVARLSQLFTLEAGDVLFTGTPSGVAPLAVGEDVEARVEGLQPCRFRV 303
            IAPAG +  +   RI L+V+GV +QDS + EM+WSVPE+VA LS+ + L+ GD++FTGTPSGV PLA+G+ V+  VEGL P  F +
Sbjct:  113 IAPAGAALTKA--RIHLDVNGVTKQDSDIAEMIWSVPEVVAHLSRSWALQPGDLVFTGTPSGVGPLAIGDQVQCAVEGLPPLSFSI 196          
BLAST of mRNA_L-elsbetiae_contig8028.17013.1 vs. uniprot
Match: A0A1B1ANA1_9PROT (Fumarylacetoacetate hydrolase n=2 Tax=Candidatus Viadribacter manganicus TaxID=1759059 RepID=A0A1B1ANA1_9PROT)

HSP 1 Score: 94.4 bits (233), Expect = 1.390e-21
Identity = 47/100 (47.00%), Postives = 65/100 (65.00%), Query Frame = 1
Query:    4 PIGALTPVAEGGAVIAPAGLSEDEGERRIWLEVDGVKRQDSVLGEMVWSVPEMVARLSQLFTLEAGDVLFTGTPSGVAPLAVGEDVEARVEGLQPCRFRV 303
            PI ALTP+A  G          D    RIW++V+G  RQD+   +M+WS+PE++A LSQ + L  GD++FTG+PSGVAPL  G+ +E  V+GL P RF +
Sbjct:  138 PISALTPIASCG----------DVTNARIWIKVNGETRQDANTHDMIWSIPEIIAALSQWWDLRPGDLIFTGSPSGVAPLNPGDTIECGVDGLAPLRFSI 227          
BLAST of mRNA_L-elsbetiae_contig8028.17013.1 vs. uniprot
Match: UPI000DBE871F (fumarylacetoacetate hydrolase family protein n=1 Tax=Roseovarius amoyensis TaxID=2211448 RepID=UPI000DBE871F)

HSP 1 Score: 94.4 bits (233), Expect = 1.510e-21
Identity = 43/90 (47.78%), Postives = 63/90 (70.00%), Query Frame = 1
Query:   40 AVIAPAGLSEDEGERRIWLEVDGVKRQDSVLGEMVWSVPEMVARLSQLFTLEAGDVLFTGTPSGVAPLAVGEDVEARVEGLQPCRFRVGP 309
            A I PA      G++RIWL+ DG + QD+ L EMVW+V E++A LS+ + L AGD+++TGTP+GV P+A G  +E  ++GL+P R R+ P
Sbjct:  142 APITPAAALGKIGDQRIWLDRDGERVQDARLSEMVWNVAEIIAHLSRYYRLAAGDLIYTGTPAGVGPVAPGSALEGGIDGLKPVRLRIEP 231          
BLAST of mRNA_L-elsbetiae_contig8028.17013.1 vs. uniprot
Match: A0A0N1EFD1_9SPHN (Fumarylacetoacetase n=4 Tax=unclassified Novosphingobium TaxID=2644732 RepID=A0A0N1EFD1_9SPHN)

HSP 1 Score: 93.2 bits (230), Expect = 4.930e-21
Identity = 47/96 (48.96%), Postives = 67/96 (69.79%), Query Frame = 1
Query:   31 EGGAVIAP---AGLSEDEGERRIWLEVDGVKRQDSVLGEMVWSVPEMVARLSQLFTLEAGDVLFTGTPSGVAPLAVGEDVEARVEGLQPCRFRVGP 309
            E GAVIAP   A      GE+RI L  +GV +Q++ L EM+WS+PE++A LS+L+ L  GD+++TGTP+GV P+A G+ +E RVEGL+P    + P
Sbjct:  145 ENGAVIAPITPAAAFGAPGEQRITLARNGVTKQNAPLSEMIWSLPELIADLSRLYHLAPGDLIYTGTPAGVGPVAPGDRLEGRVEGLEPVVLAIEP 240          
BLAST of mRNA_L-elsbetiae_contig8028.17013.1 vs. uniprot
Match: A0A0Q4BU62_9SPHN (Fumarylacetoacetase n=1 Tax=Novosphingobium sp. Leaf2 TaxID=1735670 RepID=A0A0Q4BU62_9SPHN)

HSP 1 Score: 92.8 bits (229), Expect = 5.570e-21
Identity = 47/100 (47.00%), Postives = 67/100 (67.00%), Query Frame = 1
Query:    7 IGALTPVAEGGAVIAPAGLSEDEGERRIWLEVDGVKRQDSVLGEMVWSVPEMVARLSQLFTLEAGDVLFTGTPSGVAPLAVGEDVEARVEGLQPCRFRVG 306
            IGA+TP A      A AG       +RI L+ +G +RQD VL +M+WS+PE +A LS+L+ L  GD+++TGTP+GV P+A G+ +E  VEGL+P R  +G
Sbjct:  139 IGAITPAAH----FAAAG-------QRIALDQNGARRQDGVLSDMIWSIPEQIADLSRLYHLAPGDLIYTGTPAGVGPIAPGDVLEGTVEGLEPVRLTIG 227          
BLAST of mRNA_L-elsbetiae_contig8028.17013.1 vs. uniprot
Match: A0A534J7D7_9GAMM (Fumarylacetoacetate hydrolase family protein n=10 Tax=unclassified Gammaproteobacteria TaxID=33811 RepID=A0A534J7D7_9GAMM)

HSP 1 Score: 92.0 bits (227), Expect = 1.150e-20
Identity = 48/105 (45.71%), Postives = 66/105 (62.86%), Query Frame = 1
Query:    4 PIGALTPVAEGGAVIAPAGLSEDEGERRIWLEVDGVKRQDSVLGEMVWSVPEMVARLSQLFTLEAGDVLFTGTPSGVAPLAVGEDVEARVEGLQPCRFRVGPLLP 318
            P+ A+ P A+G        LS      RIWL V+G +RQ+S +  MVW VP ++A LS+L+ L  GD++FTGTPSGV PL  G+ +E  +EGL+  R R+GP  P
Sbjct:  138 PVAAIRPAAQGH-------LSRG----RIWLTVNGERRQESDVSTMVWDVPHIIAALSKLYELRPGDLIFTGTPSGVGPLKPGDRLEGGIEGLEVLRNRIGPAQP 231          
BLAST of mRNA_L-elsbetiae_contig8028.17013.1 vs. uniprot
Match: UPI0015EF16C3 (fumarylacetoacetate hydrolase family protein n=1 Tax=Chthonobacter rhizosphaerae TaxID=2735553 RepID=UPI0015EF16C3)

HSP 1 Score: 91.7 bits (226), Expect = 1.490e-20
Identity = 42/81 (51.85%), Postives = 56/81 (69.14%), Query Frame = 1
Query:   40 AVIAPAGLSEDEGERRIWLEVDGVKRQDSVLGEMVWSVPEMVARLSQLFTLEAGDVLFTGTPSGVAPLAVGEDVEARVEGL 282
            + IAPA          IWL+VDG +RQ   L +M+WSVPE++A LS LF LEAGD++FTGTP+GV P+ VG+ +   VEG+
Sbjct:  140 SAIAPASAVGHPASGAIWLDVDGARRQTGDLAQMIWSVPELIAHLSGLFRLEAGDLVFTGTPAGVGPVMVGQTMRCGVEGV 220          
BLAST of mRNA_L-elsbetiae_contig8028.17013.1 vs. uniprot
Match: A0A318U1Z5_9RHOB (Fumarylpyruvate hydrolase n=1 Tax=Rhodobacter viridis TaxID=1054202 RepID=A0A318U1Z5_9RHOB)

HSP 1 Score: 90.9 bits (224), Expect = 2.460e-20
Identity = 45/93 (48.39%), Postives = 60/93 (64.52%), Query Frame = 1
Query:   31 EGGAVIAPAGLSEDEGERRIWLEVDGVKRQDSVLGEMVWSVPEMVARLSQLFTLEAGDVLFTGTPSGVAPLAVGEDVEARVEGLQPCRFRVGP 309
            E  AVIAP        ++ I L V+G  RQ + L +MVWSVPE++A L  L+TL AGDV+FTGTP+GV  +  G+ +E R+EGL P R  + P
Sbjct:  125 ENSAVIAPLSQDFAIADQAIALSVNGTPRQQAKLSDMVWSVPEILAHLGTLYTLRAGDVIFTGTPAGVGAVRPGDVLEGRIEGLAPVRLTIQP 217          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8028.17013.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FPA3_ECTSI1.110e-5582.73Fumarylacetoacetate (FAA) hydrolase, putative n=1 ... [more]
A0A6H5K6H3_9PHAE2.500e-5280.91FAA_hydrolase domain-containing protein n=1 Tax=Ec... [more]
UPI001EF94E7A6.480e-2354.65fumarylacetoacetate hydrolase family protein n=1 T... [more]
A0A1B1ANA1_9PROT1.390e-2147.00Fumarylacetoacetate hydrolase n=2 Tax=Candidatus V... [more]
UPI000DBE871F1.510e-2147.78fumarylacetoacetate hydrolase family protein n=1 T... [more]
A0A0N1EFD1_9SPHN4.930e-2148.96Fumarylacetoacetase n=4 Tax=unclassified Novosphin... [more]
A0A0Q4BU62_9SPHN5.570e-2147.00Fumarylacetoacetase n=1 Tax=Novosphingobium sp. Le... [more]
A0A534J7D7_9GAMM1.150e-2045.71Fumarylacetoacetate hydrolase family protein n=10 ... [more]
UPI0015EF16C31.490e-2051.85fumarylacetoacetate hydrolase family protein n=1 T... [more]
A0A318U1Z5_9RHOB2.460e-2048.39Fumarylpyruvate hydrolase n=1 Tax=Rhodobacter viri... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig8028contigL-elsbetiae_contig8028:17..1709 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score180.3
Seed ortholog evalue5e-43
Seed eggNOG ortholog2880.D7FPA3
KEGG rclassRC00326,RC00446
KEGG koko:K01557
KEGG ReactionR01085
KEGG Pathwayko00350,ko01100,ko01120,map00350,map01100,map01120
Hectar predicted targeting categoryother localisation
EggNOG free text desc.acylpyruvate hydrolase activity
EggNOG OGsCOG0179@1,KOG1535@2759
EC3.7.1.5
COG Functional cat.Q
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Ec32 ortholog descriptionFumarylacetoacetase, C-terminal-related
Ec32 orthologEc-15_004170.1
Exons2
Model size330
Cds size330
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816887.8379319-CDS-L-elsbetiae_contig8028:16..1961622816887.8379319-CDS-L-elsbetiae_contig8028:16..196Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8028 17..196 +
1691683888.4459352-CDS-L-elsbetiae_contig8028:16..1961691683888.4459352-CDS-L-elsbetiae_contig8028:16..196Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8028 17..196 +
1622816887.849146-CDS-L-elsbetiae_contig8028:1559..17091622816887.849146-CDS-L-elsbetiae_contig8028:1559..1709Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8028 1560..1709 +
1691683888.4597163-CDS-L-elsbetiae_contig8028:1559..17091691683888.4597163-CDS-L-elsbetiae_contig8028:1559..1709Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8028 1560..1709 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig8028.17013.1prot_L-elsbetiae_contig8028.17013.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig8028 17..1709 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig8028.17013.1

>prot_L-elsbetiae_contig8028.17013.1 ID=prot_L-elsbetiae_contig8028.17013.1|Name=mRNA_L-elsbetiae_contig8028.17013.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=110bp
GPIGALTPVAEGGAVIAPAGLSEDEGERRIWLEVDGVKRQDSVLGEMVWS
VPEMVARLSQLFTLEAGDVLFTGTPSGVAPLAVGEDVEARVEGLQPCRFR
VGPLLPPSQ*
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mRNA from alignment at L-elsbetiae_contig8028:17..1709+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig8028.17013.1 ID=mRNA_L-elsbetiae_contig8028.17013.1|Name=mRNA_L-elsbetiae_contig8028.17013.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1693bp|location=Sequence derived from alignment at L-elsbetiae_contig8028:17..1709+ (Laminarionema elsbetiae ELsaHSoW15)
GGCCCGATCGGCGCGCTGACTCCCGTGGCCGAGGGCGGGGCTGTCATCGC TCCGGCCGGACTCTCGGAAGACGAAGGGGAGCGGCGGATTTGGCTTGAGG TGGACGGGGTGAAGCGGCAGGATTCCGTCCTCGGGGAGATGGTGTGGAGT GTGCCCGAGATGGTCGCCCGTTTATCCCAGGTACTAACACATAATGTTTA TTTTTATTGGAGGGGCATTTTCTTGTGGGGTCAGAAAAGTCGAGGATAGA TGGTCTTATTTGTTTTTTTTTTGCCCTCCCATTAGTGGCTCATTCGTCGT CTGCCCCACTGGCTCCCTCCCTCAACTACGACTAGCTAGACGGCCCAACC GGGGTCACACATCTTATGTATGCCTGGTTCGCGTAGAAACAGCCCCACGT AGTTGAGAAATTCTTGCTTGGTTCCCGCCGAGCTGGCCGTTGGGTCTGCG TGGCGAATGCTCTGGGGGGTGACGCTGGGTCACATGAAGCTTACGCCCTC GAGGTTAAGAGAACGATCCGTGAGCAGGAGGGCGAGCAGTCGGCGCGGGT GTGGGAGGTTTCGGGGCTTTGTTTGACATCTCTCACCGTCTCAGACACCC TTCTTCGGCGAGATCCACCCAGCTTTGGCCGTTGGTCACTCGCATTTGCC ACGCAAGCCACCAGAAAGAAACCCCGTTTGACAAATGCGACGCTCAGCAT CAATATGGAGCTTTTGAGTTTTCGAAAGGCTAGAGCGCGGTCCGTGGGCA GGAGGGCGAGCAATCGGAGGGAGTATGTATTTTTCCTGGGTGGTTGCAAC ATTACCATTTCTCACGGGCATTTTTTTCTACTCCGCAGGGTTTCTAGATA AAGTATGTAGGTACATACGCGAACCAGACATGAAAAATATTTTGTTATCG ATTTTTCTGGTCCCATGAGAACTGGCCTCATGTACTTCTATGTAGTAAAA ACATCACCAGCAGGCACCGCAGGAGGGGGTCCACCGCCCCCCCACCCTCC TGTGTGACCCCGGTTGGGTCGTCTAGCTACCGCAATTCGCATGACTACGG TAGTCGTAGTAGAGGAAGGGGGCCAGTGGGGCAGACGACAAACAAGAGCC AATAATGGGAAGAAAACAAAACAAATGTCGTATTTAGCACTCTTCACTCC CGGAATGGAACAACGTTTTTCGCCGTGCGCTGGTTTTCGCTTCGGTTTTG GGGAGCTTTGTCGCGCACGCACACCCCATCTGCCCTGATGGCGCACCTAT TCTACATGCCGCTGGAGCTGGAACAATCCCACTCCTACCGTCCACGTACA CACAACCGCGGCCGCCCTCGAGCGGTGCATCCCAACTATCTACGGATGTA GACGTCAGATTATACTTGCTTGAACACTTCGATGAACCCGTACCTTCACG ACCCAACAGCTGCGTATGTATCTACAACATACAATGTGAAATCCTCCCCC CGCGGACACGGCGGTATTTTATATTTCACGCTTAAATATCCCCCCCCCCT CCTCCTCCTGCTGACAACTGCACCTCTCTCTATACTCTCGCAGCTGTTTA CGTTGGAGGCTGGGGACGTATTGTTCACGGGCACCCCCTCGGGCGTCGCA CCCCTAGCGGTGGGCGAGGACGTCGAAGCACGGGTCGAAGGGCTGCAGCC TTGCCGATTCCGGGTCGGCCCCTTGCTGCCGCCTTCTCAATAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig8028:17..1709+

>mRNA_L-elsbetiae_contig8028.17013.1 ID=mRNA_L-elsbetiae_contig8028.17013.1|Name=mRNA_L-elsbetiae_contig8028.17013.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=660bp|location=Sequence derived from alignment at L-elsbetiae_contig8028:17..1709+ (Laminarionema elsbetiae ELsaHSoW15)
GGCCCGATCGGCGCGCTGACTCCCGTGGCCGAGGGCGGGGCTGTCATCGC
TCCGGCCGGACTCTCGGAAGACGAAGGGGAGCGGCGGATTTGGCTTGAGG
TGGACGGGGTGAAGCGGCAGGATTCCGTCCTCGGGGAGATGGTGTGGAGT
GTGCCCGAGATGGTCGCCCGTTTATCCCAGGGCCCGATCGGCGCGCTGAC
TCCCGTGGCCGAGGGCGGGGCTGTCATCGCTCCGGCCGGACTCTCGGAAG
ACGAAGGGGAGCGGCGGATTTGGCTTGAGGTGGACGGGGTGAAGCGGCAG
GATTCCGTCCTCGGGGAGATGGTGTGGAGTGTGCCCGAGATGGTCGCCCG
TTTATCCCAGCTGTTTACGTTGGAGGCTGGGGACGTATTGTTCACGGGCA
CCCCCTCGGGCGTCGCACCCCTAGCGGTGGGCGAGGACGTCGAAGCACGG
GTCGAAGGGCTGCAGCCTTGCCGATTCCGGGTCGGCCCCTTGCTGCCGCC
TTCTCAATAGCTGTTTACGTTGGAGGCTGGGGACGTATTGTTCACGGGCA
CCCCCTCGGGCGTCGCACCCCTAGCGGTGGGCGAGGACGTCGAAGCACGG
GTCGAAGGGCTGCAGCCTTGCCGATTCCGGGTCGGCCCCTTGCTGCCGCC
TTCTCAATAG
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