mRNA_L-elsbetiae_contig8027.17012.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig8027.17012.1
Unique NamemRNA_L-elsbetiae_contig8027.17012.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig8027.17012.1 vs. uniprot
Match: D7G688_ECTSI (ADP,ATP carrier protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G688_ECTSI)

HSP 1 Score: 121 bits (304), Expect = 7.920e-31
Identity = 62/65 (95.38%), Postives = 64/65 (98.46%), Query Frame = 2 
Query:    2 VKGKAAIDGLGSRLGKSGASFMQQGLVLAFGNILNAAPVVAVIFYAALGSWSFGAVRLADMFETK 196
            VKGKAAIDGLGSRLGKSGASFMQQGLVLAFGNILNAAPVVAVIFYAALGSW++GAVRLADMFE K
Sbjct:  427 VKGKAAIDGLGSRLGKSGASFMQQGLVLAFGNILNAAPVVAVIFYAALGSWTYGAVRLADMFEAK 491
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BLAST of mRNA_L-elsbetiae_contig8027.17012.1 vs. uniprot
Match: A0A1Z5KN04_FISSO (ADP,ATP carrier protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KN04_FISSO)

HSP 1 Score: 86.7 bits (213), Expect = 2.490e-18
Identity = 46/62 (74.19%), Postives = 50/62 (80.65%), Query Frame = 2 
Query:    2 VKGKAAIDGLGSRLGKSGASFMQQGLVLAFGNILNAAPVVAVIFYAALGSWSFGAVRLADMF 187
            VKGKAAID LGSRLGKSG SF+QQGLVL FGNI+NAAPVV VIFY  L SW   A RL+ +F
Sbjct:  487 VKGKAAIDVLGSRLGKSGGSFIQQGLVLIFGNIINAAPVVGVIFYGVLLSWLSAANRLSGLF 548
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BLAST of mRNA_L-elsbetiae_contig8027.17012.1 vs. uniprot
Match: A0A7S2P7Y9_9STRA (ADP,ATP carrier protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2P7Y9_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 1.150e-17
Identity = 41/64 (64.06%), Postives = 51/64 (79.69%), Query Frame = 2 
Query:    2 VKGKAAIDGLGSRLGKSGASFMQQGLVLAFGNILNAAPVVAVIFYAALGSWSFGAVRLADMFET 193
            VKGKAAID LGSRLGKSGASF+QQGLVLAFGNI+NAAPV+ +++Y+   SW      L  ++E+
Sbjct:  430 VKGKAAIDVLGSRLGKSGASFVQQGLVLAFGNIINAAPVIGILYYSIAASWLSAVYTLGRLYES 493
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BLAST of mRNA_L-elsbetiae_contig8027.17012.1 vs. uniprot
Match: K0SKJ7_THAOC (ADP,ATP carrier protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SKJ7_THAOC)

HSP 1 Score: 77.8 bits (190), Expect = 2.110e-17
Identity = 38/62 (61.29%), Postives = 49/62 (79.03%), Query Frame = 2 
Query:    2 VKGKAAIDGLGSRLGKSGASFMQQGLVLAFGNILNAAPVVAVIFYAALGSWSFGAVRLADMF 187
            VKGKAAI+ LGSR+GKSG SF+QQGLVL FG+I+NAAP +A ++Y+ L  W   A RL+ +F
Sbjct:   12 VKGKAAIEVLGSRIGKSGGSFVQQGLVLLFGSIINAAPALAALYYSVLVWWGISANRLSSLF 73
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BLAST of mRNA_L-elsbetiae_contig8027.17012.1 vs. uniprot
Match: A0A7S1E6S4_9STRA (ADP,ATP carrier protein (Fragment) n=2 Tax=Thalassionema nitzschioides TaxID=33649 RepID=A0A7S1E6S4_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 6.050e-17
Identity = 41/65 (63.08%), Postives = 51/65 (78.46%), Query Frame = 2 
Query:    2 VKGKAAIDGLGSRLGKSGASFMQQGLVLAFGNILNAAPVVAVIFYAALGSWSFGAVRLADMFETK 196
            VKGKAAID LGSR+GKSG SF+QQGLV  FG+I++AAPVVAV FY+ L  W  GA +L+ +F  +
Sbjct:   90 VKGKAAIDVLGSRVGKSGGSFIQQGLVFIFGDIISAAPVVAVNFYSVLFLWFTGANQLSGLFHAQ 154
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BLAST of mRNA_L-elsbetiae_contig8027.17012.1 vs. uniprot
Match: B7FWL8_PHATC (ADP,ATP carrier protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FWL8_PHATC)

HSP 1 Score: 82.4 bits (202), Expect = 7.710e-17
Identity = 40/65 (61.54%), Postives = 51/65 (78.46%), Query Frame = 2 
Query:    2 VKGKAAIDGLGSRLGKSGASFMQQGLVLAFGNILNAAPVVAVIFYAALGSWSFGAVRLADMFETK 196
            VKGKAAID LGSR+GKSG S +QQGLV  FGNI+NAAPVV V++Y+ L +W   A RL+ +F+ +
Sbjct:  494 VKGKAAIDVLGSRIGKSGGSLIQQGLVFVFGNIINAAPVVGVVYYSVLVAWMSAAGRLSGLFQAQ 558
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BLAST of mRNA_L-elsbetiae_contig8027.17012.1 vs. uniprot
Match: A0A7S2I3P2_9STRA (ADP,ATP carrier protein (Fragment) n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2I3P2_9STRA)

HSP 1 Score: 78.2 bits (191), Expect = 1.030e-16
Identity = 40/65 (61.54%), Postives = 49/65 (75.38%), Query Frame = 2 
Query:    2 VKGKAAIDGLGSRLGKSGASFMQQGLVLAFGNILNAAPVVAVIFYAALGSWSFGAVRLADMFETK 196
            VKGKAAID LGSR+GKSGAS +QQGLVL FGNI+NA+P+V  IFYA    W   A +L+ ++  K
Sbjct:   88 VKGKAAIDVLGSRVGKSGASLIQQGLVLLFGNIINASPMVMAIFYAVSVGWMMAASKLSVLYLAK 152
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BLAST of mRNA_L-elsbetiae_contig8027.17012.1 vs. uniprot
Match: A0A7S2SW40_9STRA (ADP,ATP carrier protein n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SW40_9STRA)

HSP 1 Score: 81.3 bits (199), Expect = 1.910e-16
Identity = 38/65 (58.46%), Postives = 50/65 (76.92%), Query Frame = 2 
Query:    2 VKGKAAIDGLGSRLGKSGASFMQQGLVLAFGNILNAAPVVAVIFYAALGSWSFGAVRLADMFETK 196
            VKGKAAID +GSR GKSG + +QQGLVL FG+I+ AAP VA +F+A + +W + A +LA+ FE K
Sbjct:  427 VKGKAAIDVMGSRFGKSGGALIQQGLVLVFGSIITAAPAVAALFFAVIAAWVYSAFQLAEQFEAK 491
[Close]
BLAST of mRNA_L-elsbetiae_contig8027.17012.1 vs. uniprot
Match: A0A1E7EXX4_9STRA (ADP,ATP carrier protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7EXX4_9STRA)

HSP 1 Score: 80.5 bits (197), Expect = 3.690e-16
Identity = 42/62 (67.74%), Postives = 50/62 (80.65%), Query Frame = 2 
Query:    2 VKGKAAIDGLGSRLGKSGASFMQQGLVLAFGNILNAAPVVAVIFYAALGSWSFGAVRLADMF 187
            VKGKAAID LGSR+GKSG SF+QQ LV  FGNI+NAAPVVAVIFY+ L +W   A +L+ +F
Sbjct:  584 VKGKAAIDVLGSRIGKSGGSFIQQILVFGFGNIINAAPVVAVIFYSILFAWLSAANKLSTLF 645
[Close]
BLAST of mRNA_L-elsbetiae_contig8027.17012.1 vs. uniprot
Match: A0A7R9WNG8_9STRA (ADP,ATP carrier protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9WNG8_9STRA)

HSP 1 Score: 76.3 bits (186), Expect = 3.850e-16
Identity = 39/65 (60.00%), Postives = 47/65 (72.31%), Query Frame = 2 
Query:    2 VKGKAAIDGLGSRLGKSGASFMQQGLVLAFGNILNAAPVVAVIFYAALGSWSFGAVRLADMFETK 196
             KGKAAID LGSR+GKSG S +QQGLV  FGNI++AAP VA+IFY+ L  W   A  L+ +F  K
Sbjct:   39 TKGKAAIDVLGSRIGKSGGSLIQQGLVFMFGNIISAAPAVAMIFYSVLFGWLTSANTLSGLFNEK 103
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8027.17012.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G688_ECTSI7.920e-3195.38ADP,ATP carrier protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A1Z5KN04_FISSO2.490e-1874.19ADP,ATP carrier protein n=2 Tax=Fistulifera solari... [more]
A0A7S2P7Y9_9STRA1.150e-1764.06ADP,ATP carrier protein n=1 Tax=Leptocylindrus dan... [more]
K0SKJ7_THAOC2.110e-1761.29ADP,ATP carrier protein n=1 Tax=Thalassiosira ocea... [more]
A0A7S1E6S4_9STRA6.050e-1763.08ADP,ATP carrier protein (Fragment) n=2 Tax=Thalass... [more]
B7FWL8_PHATC7.710e-1761.54ADP,ATP carrier protein n=2 Tax=Phaeodactylum tric... [more]
A0A7S2I3P2_9STRA1.030e-1661.54ADP,ATP carrier protein (Fragment) n=1 Tax=Helicot... [more]
A0A7S2SW40_9STRA1.910e-1658.46ADP,ATP carrier protein n=2 Tax=Rhizochromulina ma... [more]
A0A1E7EXX4_9STRA3.690e-1667.74ADP,ATP carrier protein n=1 Tax=Fragilariopsis cyl... [more]
A0A7R9WNG8_9STRA3.850e-1660.00ADP,ATP carrier protein n=1 Tax=Craspedostauros au... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig8027contigL-elsbetiae_contig8027:4057..5169 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size201
Cds size198
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816887.790245-CDS-L-elsbetiae_contig8027:4057..41301622816887.790245-CDS-L-elsbetiae_contig8027:4057..4130Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8027 4058..4130 -
1691683888.4256232-CDS-L-elsbetiae_contig8027:4057..41301691683888.4256232-CDS-L-elsbetiae_contig8027:4057..4130Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8027 4058..4130 -
1622816887.8021998-CDS-L-elsbetiae_contig8027:5044..51691622816887.8021998-CDS-L-elsbetiae_contig8027:5044..5169Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8027 5045..5169 -
1691683888.4355736-CDS-L-elsbetiae_contig8027:5044..51691691683888.4355736-CDS-L-elsbetiae_contig8027:5044..5169Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8027 5045..5169 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig8027.17012.1prot_L-elsbetiae_contig8027.17012.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig8027 4058..5169 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig8027.17012.1

>prot_L-elsbetiae_contig8027.17012.1 ID=prot_L-elsbetiae_contig8027.17012.1|Name=mRNA_L-elsbetiae_contig8027.17012.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=66bp
GQREGGHRWAGVPAREVGGIIHAARPGARLREHPQRGPRCRSDILRCPRI
VVLRSGPISGHVRNQD
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mRNA from alignment at L-elsbetiae_contig8027:4057..5169-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig8027.17012.1 ID=mRNA_L-elsbetiae_contig8027.17012.1|Name=mRNA_L-elsbetiae_contig8027.17012.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1113bp|location=Sequence derived from alignment at L-elsbetiae_contig8027:4057..5169- (Laminarionema elsbetiae ELsaHSoW15)
GGTCAAAGGGAAGGCGGCCATCGATGGGCTGGGGTCCCGGCTCGGGAAGT
CGGGGGCATCATTCATGCAGCAAGGCCTGGTGCTCGCCTTCGGGAACATC
CTCAACGCGGCCCCCGTTGTCGCAGGTGTGTGCATCGCATTGTTGCGCTG
TCTGCCCCCCCCCCCCCACCCTGGTGTTTAGTAGTGACGCCTAAAAGCGT
GTGTCCCCGTGTCGCGCTTGTTTTGTGTGTAAATTTGCACGGGGGAGGGT
CTTTCTGGGTGTTTTTGGGTGCAGTTTTTCGGTCGTGTTGGTTTTTGCCG
TGTGGGGCCCGGTCCTTCCTCCCCCCCCCCCCCCCCCCCACCCCCCTTGT
TATCTTCGAGGCCGTCCCCCCGGCTTTCGTGCTGCGGTACGCGCGTACGG
GCTTGTGGTGATGCTCCGGGAATGTATGTCTCTGTGTGCGTACAATACGT
ACGTACTGCTGCAGTTTTGTGTCGCGTTTGTTAGATATATAGGAGCATGT
ACGGATTGATCTTTTTAACAGCACCGCTGTCCAAGCCACCTCGCGTGACT
CGTCTCATGGAACCAGCGGCGCTGCCTGCGTAGACACACATGATGTGTGA
TGGGTACGCCTCGAGCGGCACGCCAGAGCTACTACAGCAGTATGGCACAT
GTATATACATGTGTTTCATGTACTCTGTATGTAGTTGTTTTCTCCTAAAT
ATACCGCCAGGCATCCAATTGGGTTGATCGATTCCCTTGCTGGTTGCGAA
ACAAAAAATGGTTCAGTTTACAGCAGTAAGGGCAGGTTGTCGGAACCCTG
TCGTGTCTTGCTTTTGTTTCCTGCATATTTATGTGTGCTCCTAAACAAAA
AGATGGTTCAGTTTACAGCAGTAAGGGCGTGCCTTCCGAACACGTCGAAA
CGTGAGGCTCGTTGGCCGTCAGTGCCTTTGCGCACCCTGCCCCTCAAGTC
CTTGCCCCCCCCCCCCCCCCCCCCCCCGGCCGCCCGGCCTTCCTTGCGCG
TACCCCCTGGTCGCCCCTTCTTTCCATCGAAACGTGCAGTGATATTCTAC
GCTGCCCTCGGATCGTGGTCCTTCGGAGCGGTCCGATTAGCGGACATGTT
CGAAACCAAGACC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig8027:4057..5169-

>mRNA_L-elsbetiae_contig8027.17012.1 ID=mRNA_L-elsbetiae_contig8027.17012.1|Name=mRNA_L-elsbetiae_contig8027.17012.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=396bp|location=Sequence derived from alignment at L-elsbetiae_contig8027:4057..5169- (Laminarionema elsbetiae ELsaHSoW15)
GGTCAAAGGGAAGGCGGCCATCGATGGGCTGGGGTCCCGGCTCGGGAAGT
CGGGGGCATCATTCATGCAGCAAGGCCTGGTGCTCGCCTTCGGGAACATC
CTCAACGCGGCCCCCGTTGTCGCAGGGTCAAAGGGAAGGCGGCCATCGAT
GGGCTGGGGTCCCGGCTCGGGAAGTCGGGGGCATCATTCATGCAGCAAGG
CCTGGTGCTCGCCTTCGGGAACATCCTCAACGCGGCCCCCGTTGTCGCAG
TGATATTCTACGCTGCCCTCGGATCGTGGTCCTTCGGAGCGGTCCGATTA
GCGGACATGTTCGAAACCAAGACTGATATTCTACGCTGCCCTCGGATCGT
GGTCCTTCGGAGCGGTCCGATTAGCGGACATGTTCGAAACCAAGAC
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