mRNA_L-elsbetiae_contig8026.17011.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig8026.17011.1
Unique NamemRNA_L-elsbetiae_contig8026.17011.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig8026.17011.1 vs. uniprot
Match: D7G674_ECTSI (CCHC-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G674_ECTSI)

HSP 1 Score: 144 bits (363), Expect = 1.170e-38
Identity = 94/197 (47.72%), Postives = 122/197 (61.93%), Query Frame = 1
Query:    1 MRQGMEGPLAFDRLVQDLGRMVSKATPNALVFELNNLSVPAGTVYDVYFSQLQGLVENAKSPGHMSPSDSILQHAVRASVSDQFSVLTANMFKGKAQGEMPFDSISELMSELKYFEGVRAQASVANRTLMQVTGKSAVGAQHTGFGGSGGSVSGARASPYRAASPARSQGGKGYQGRVMTVAE-ELEDETQEFQRVY 588
            M +G  G  A   L   LGR+VS ++P  LV++L   +VP GT Y  Y + L GLV N ++ G ++P D+ +Q AVR SVSDQ+SVLTA++FKGK  G +PFD+I  LM EL+ FE V+  A+   R   QV G S  G Q     G GG+ SG   + +R+ASP R  GG G + RVMTV E + EDE  EFQRVY
Sbjct:    1 MARGSTGREALTFLTSALGRVVSSSSPEKLVYDLQTFTVPTGTPYSEYLTTLHGLVHNVRNLGIVTPQDNTIQLAVRESVSDQYSVLTASVFKGKQLGLVPFDNIDTLMQELRNFEAVKGGATTPTRRSAQVKGSSG-GRQGQKRDGGGGTGSGGT-NTFRSASPGRLDGGYGGR-RVMTVDEVDCEDECAEFQRVY 194          
BLAST of mRNA_L-elsbetiae_contig8026.17011.1 vs. uniprot
Match: A0A6H5KBL4_9PHAE (CCHC-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBL4_9PHAE)

HSP 1 Score: 149 bits (376), Expect = 4.740e-38
Identity = 91/197 (46.19%), Postives = 124/197 (62.94%), Query Frame = 1
Query:    1 MRQGMEGPLAFDRLVQDLGRMVSKATPNALVFELNNLSVPAGTVYDVYFSQLQGLVENAKSPGHMSPSDSILQHAVRASVSDQFSVLTANMFKGKAQGEMPFDSISELMSELKYFEGVRAQASVANRTLMQVTGKSAVGAQHTGFGGSGGSVSGARASPYRAASPARSQGGKGYQGRVMTVAE-ELEDETQEFQRVY 588
            M +G  G  A   L   LGR+VS ++P  LV++L   + P GT Y  Y + LQGLV+N ++ G ++P D+ +Q AVR SVSDQ+SVLTA++FKGK +G +PFD+I  LM EL+ FE V+  A+   R + QV  KS+ G +    G  GG       + +R+ASP RS GG  Y GRVMTV + + EDE  EF+RVY
Sbjct:  259 MEEGSTGKKALAFLTSALGRVVSSSSPEKLVYDLQTFAAPTGTPYSEYLTILQGLVQNVRNLGVVTPQDNTIQLAVRESVSDQYSVLTASVFKGKEKGVVPFDNIDTLMHELRNFEAVKGGATTPTRMMAQV--KSSSGWRQGQRGCGGGRTGSGGTNTFRSASPGRSDGG--YGGRVMTVEDMDYEDECAEFKRVY 451          
BLAST of mRNA_L-elsbetiae_contig8026.17011.1 vs. uniprot
Match: A0A6H5KRF6_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRF6_9PHAE)

HSP 1 Score: 138 bits (347), Expect = 3.130e-35
Identity = 92/202 (45.54%), Postives = 120/202 (59.41%), Query Frame = 1
Query:    1 MRQGMEGPLAFDRLVQDLGRMVSKATPNALVFELNNLSVPAGTVYDVYFSQLQGLVENAKSPGHMSPSDSILQHAVRASVSDQFSVLTANMFKGKAQGEMPFDSISELMSELKYFEGVRAQASVANRTLMQVTGKSAVGAQHTGFGGSGGSVSGARASP-----YRAASPARSQGGKGYQGRVMTVAE-ELEDETQEFQRVY 588
            M +G  G  A   L   L R+VS ++P  LV++L   +VP GT Y  Y + LQGLV N ++ G ++P D+ +Q AVR SVSDQ+SVLTA+MFKGK    + FD+I  LM EL+ FE V+  A+   R + QV  KS+ G +    GG GG       +       R+ASP RS GG  Y GRVMTV + + EDE  EFQRVY
Sbjct:   55 MDEGSTGKKALTFLTSALWRVVSSSSPEKLVYDLQTCAVPTGTPYSEYLTTLQGLVHNVRNLGVVTPQDNTIQLAVRESVSDQYSVLTASMFKGKELCVVAFDNIDTLMHELRNFEAVKGGATTPTRRMAQV--KSSSGWRQGQRGGGGGRTGSGGTNTRVMTGXRSASPGRSDGG--YGGRVMTVEDMDYEDECAEFQRVY 252          
BLAST of mRNA_L-elsbetiae_contig8026.17011.1 vs. uniprot
Match: A0A6H5K1N6_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1N6_9PHAE)

HSP 1 Score: 118 bits (295), Expect = 1.680e-26
Identity = 80/194 (41.24%), Postives = 111/194 (57.22%), Query Frame = 1
Query:   10 GMEGPLAFDRLVQDLGRMVSKATPNALVFELNNLSVPAGTVYDVYFSQLQGLVENAKSPGHMSPSDSILQHAVRASVSDQFSVLTANMFKGKAQGEMPFDSISELMSELKYFEGVRAQASVANRTLMQVTGKSAVGAQHTGFGGSGGSVSGARASPYRAASPARSQGGKGYQG-RVMTVAEELEDETQEFQRVY 588
            GM G  A + LV+ L R +S ATP  +VF L NL V AGT +  Y + L+ LV+NA S GH S  D++LQ AVR SV DQ+S +  ++FKG+    +P+DSI +LM  L+       +A+   R ++ V  K A        G  GG+ S    S   AAS  R  G +  QG RVM + EE+EDE +EF++V+
Sbjct:  558 GMAGREALNFLVRVLTRTLSMATPQHVVFALQNLEVDAGTPFSEYMNTLRALVQNAMSVGHESAQDNVLQLAVRDSVCDQYSNIAVDVFKGRDLMAVPYDSIRDLMDALEVLAWNTTEATAVKRNVISVQTKRA--------GQGGGNASAGTTSYASAASAGRMYGKQPSQGARVMNIHEEMEDEEKEFKKVH 743          
BLAST of mRNA_L-elsbetiae_contig8026.17011.1 vs. uniprot
Match: A0A6H5K8R6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8R6_9PHAE)

HSP 1 Score: 105 bits (262), Expect = 4.220e-23
Identity = 60/136 (44.12%), Postives = 81/136 (59.56%), Query Frame = 1
Query:    1 MRQGMEGPLAFDRLVQDLGRMVSKATPNALVFELNNLSVPAGTVYDVYFSQLQGLVENAKSPGHMSPSDSILQHAVRASVSDQFSVLTANMFKGKAQGEMPFDSISELMSELKYFEGVRAQASVANRTLMQVTGKS 408
            M +   G  A   L   LGR+VS + P  LV++L  L+VP GT Y  Y + LQGLV + ++ G ++P D+ +Q AV  SVSDQ SVLTA +F+GK  G + FD I  LM E++ FE V   A+   R + QV G S
Sbjct:  170 MEERSTGRKALAFLTSALGRVVSSSLPEKLVYDLQTLAVPTGTPYGEYLTTLQGLVHSVRNLGIVTPQDNTIQLAVGESVSDQDSVLTACVFRGKELGVVTFDHIDTLMHEVRSFEAVEGGATTPTRRMAQVKGSS 305          
BLAST of mRNA_L-elsbetiae_contig8026.17011.1 vs. uniprot
Match: A0A6H5K0Q4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0Q4_9PHAE)

HSP 1 Score: 102 bits (254), Expect = 2.820e-22
Identity = 74/198 (37.37%), Postives = 110/198 (55.56%), Query Frame = 1
Query:    1 MRQGMEGPLAFDRLVQDLGRMVSKATPNALVFELNNLSVPAGTVYDVYFSQLQGLVENAKSPGHMSPSDSILQHAVRASVSDQFSVLTANMFKGKAQGEMPFDSI-SELMSELKYFEGVRAQASVANRTLMQVTGKSAVGAQHTGFGGSGGSVSGARASPYRAASPARSQGGKGYQGRVMTVAE-ELEDETQEFQRVY 588
            + +G  G  A   L   LGR+V+ ++P  +V++L   +VP GT Y  Y + LQGL  N ++   ++P D+ +Q AVR  VSDQ+SVLTA++ KGK  G + FD+  +  M+++K   G R              G+   G   TG GG          + +R+ASP RS GG G + RVMTV + + ED+ +EF+RVY
Sbjct:   24 IEEGSTGRKALAFLTSALGRVVNSSSPEKVVYDLQTFAVPTGTPYREYLTTLQGLGHNVRNLALVTPQDNTIQLAVREIVSDQYSVLTASVCKGKELGVVQFDNXPTRRMAQVKGSSGGRQ-------------GQRCDGGGRTGSGGG---------NTFRSASPGRSDGGYGGR-RVMTVEDMDYEDKCEEFKRVY 198          
BLAST of mRNA_L-elsbetiae_contig8026.17011.1 vs. uniprot
Match: A0A6H5K255_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K255_9PHAE)

HSP 1 Score: 92.0 bits (227), Expect = 1.580e-17
Identity = 70/191 (36.65%), Postives = 96/191 (50.26%), Query Frame = 1
Query:   19 GPLAFDRLVQDLGRMVSKATPNALVFELNNLSVPAGTVYDVYFSQLQGLVENAKSPGHMSPSDSILQHAVRASVSDQFSVLTANMFKGKAQGEMPFDSISELMSELKYFEGVRAQASVANRTLMQVTGKSAVGAQHTGFGGSGGSVSGARASPYRAASPARSQGGKGYQGRVMTVAE-ELEDETQEFQRVY 588
            G  A   L   LGR+VS ++P  LV++L   +VP GT Y  Y + LQGLV N ++   ++P D+ +Q AVR SVSDQ+SVLTA++FKGK  G              + F+ V+     ++                                 +R+ASP RS GG  Y GRVMTV + + EDE  EF+RVY
Sbjct:  459 GKKALAFLTSALGRVVSSSSPEKLVYDLQTFAVPTGTPYSEYLTTLQGLVHNVRNLAIVTPQDNTIQLAVRESVSDQYSVLTASVFKGKELG--------------RNFKAVKGGGKDSDAEXXXXXXXXXXXXXXXXXXXXXXXXX--XXXXFRSASPGRSDGG--YGGRVMTVEDMDYEDECAEFKRVY 631          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8026.17011.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D7G674_ECTSI1.170e-3847.72CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5KBL4_9PHAE4.740e-3846.19CCHC-type domain-containing protein n=2 Tax=Ectoca... [more]
A0A6H5KRF6_9PHAE3.130e-3545.54CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5K1N6_9PHAE1.680e-2641.24CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5K8R6_9PHAE4.220e-2344.12Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K0Q4_9PHAE2.820e-2237.37Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K255_9PHAE1.580e-1736.65Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig8026contigL-elsbetiae_contig8026:4745..5508 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size764
Cds size714
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816887.745729-CDS-L-elsbetiae_contig8026:4744..54581622816887.745729-CDS-L-elsbetiae_contig8026:4744..5458Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8026 4745..5458 +
1691683888.3999052-CDS-L-elsbetiae_contig8026:4744..54581691683888.3999052-CDS-L-elsbetiae_contig8026:4744..5458Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8026 4745..5458 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816887.7571933-UTR-L-elsbetiae_contig8026:5458..55081622816887.7571933-UTR-L-elsbetiae_contig8026:5458..5508Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8026 5459..5508 +
1691683888.4125426-UTR-L-elsbetiae_contig8026:5458..55081691683888.4125426-UTR-L-elsbetiae_contig8026:5458..5508Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8026 5459..5508 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig8026.17011.1prot_L-elsbetiae_contig8026.17011.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig8026 4745..5458 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig8026.17011.1

>prot_L-elsbetiae_contig8026.17011.1 ID=prot_L-elsbetiae_contig8026.17011.1|Name=mRNA_L-elsbetiae_contig8026.17011.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=238bp
MRQGMEGPLAFDRLVQDLGRMVSKATPNALVFELNNLSVPAGTVYDVYFS
QLQGLVENAKSPGHMSPSDSILQHAVRASVSDQFSVLTANMFKGKAQGEM
PFDSISELMSELKYFEGVRAQASVANRTLMQVTGKSAVGAQHTGFGGSGG
SVSGARASPYRAASPARSQGGKGYQGRVMTVAEELEDETQEFQRVYQASQ
VRADHSTDFKKGTVRCIGGTIHWRKRTSVGVSMAQGV*
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mRNA from alignment at L-elsbetiae_contig8026:4745..5508+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig8026.17011.1 ID=mRNA_L-elsbetiae_contig8026.17011.1|Name=mRNA_L-elsbetiae_contig8026.17011.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=764bp|location=Sequence derived from alignment at L-elsbetiae_contig8026:4745..5508+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCGGCAGGGGATGGAGGGTCCCCTGGCATTTGATCGTTTGGTCCAGGA CCTGGGAAGGATGGTGAGCAAAGCAACGCCAAATGCGTTGGTGTTTGAGC TCAACAACCTGTCGGTACCTGCGGGGACTGTGTATGACGTGTACTTTAGC CAGCTGCAGGGGTTGGTTGAAAACGCAAAAAGTCCAGGCCACATGTCACC GAGTGATAGTATCTTACAGCACGCGGTGAGGGCGAGCGTGAGTGATCAGT TTAGTGTCTTGACAGCTAATATGTTTAAAGGCAAGGCGCAGGGGGAAATG CCGTTCGATAGTATCAGTGAGCTCATGTCAGAACTGAAATATTTCGAAGG TGTTCGGGCACAAGCATCAGTGGCAAACAGAACGCTGATGCAGGTAACGG GTAAGAGCGCGGTGGGGGCGCAACACACGGGTTTTGGTGGATCGGGGGGG TCGGTTTCGGGGGCGAGAGCTTCGCCTTACAGGGCGGCGTCACCGGCACG ATCGCAGGGTGGTAAGGGGTATCAGGGACGGGTGATGACTGTTGCGGAGG AACTCGAGGATGAAACCCAAGAGTTTCAACGCGTGTACCAGGCCTCACAG GTTAGAGCGGATCATTCGACAGATTTTAAAAAAGGGACTGTCCGTTGTAT CGGTGGTACAATACATTGGCGGAAAAGGACCAGTGTAGGAGTGAGTATGG CTCAAGGTGTTTGAACTGTGCCAGTCCGGATCATATGGTGCGTGAGTGTG ATAAGGGGTACATA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig8026:4745..5508+

>mRNA_L-elsbetiae_contig8026.17011.1 ID=mRNA_L-elsbetiae_contig8026.17011.1|Name=mRNA_L-elsbetiae_contig8026.17011.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1428bp|location=Sequence derived from alignment at L-elsbetiae_contig8026:4745..5508+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCGGCAGGGGATGGAGGGTCCCCTGGCATTTGATCGTTTGGTCCAGGA
CCTGGGAAGGATGGTGAGCAAAGCAACGCCAAATGCGTTGGTGTTTGAGC
TCAACAACCTGTCGGTACCTGCGGGGACTGTGTATGACGTGTACTTTAGC
CAGCTGCAGGGGTTGGTTGAAAACGCAAAAAGTCCAGGCCACATGTCACC
GAGTGATAGTATCTTACAGCACGCGGTGAGGGCGAGCGTGAGTGATCAGT
TTAGTGTCTTGACAGCTAATATGTTTAAAGGCAAGGCGCAGGGGGAAATG
CCGTTCGATAGTATCAGTGAGCTCATGTCAGAACTGAAATATTTCGAAGG
TGTTCGGGCACAAGCATCAGTGGCAAACAGAACGCTGATGCAGGTAACGG
GTAAGAGCGCGGTGGGGGCGCAACACACGGGTTTTGGTGGATCGGGGGGG
TCGGTTTCGGGGGCGAGAGCTTCGCCTTACAGGGCGGCGTCACCGGCACG
ATCGCAGGGTGGTAAGGGGTATCAGGGACGGGTGATGACTGTTGCGGAGG
AACTCGAGGATGAAACCCAAGAGTTTCAACGCGTGTACCAGGCCTCACAG
GTTAGAGCGGATCATTCGACAGATTTTAAAAAAGGGACTGTCCGTTGTAT
CGGTGGTACAATACATTGGCGGAAAAGGACCAGTGTAGGAGTGAGTATGG
CTCAAGGTGTTTGAATGCGGCAGGGGATGGAGGGTCCCCTGGCATTTGAT
CGTTTGGTCCAGGACCTGGGAAGGATGGTGAGCAAAGCAACGCCAAATGC
GTTGGTGTTTGAGCTCAACAACCTGTCGGTACCTGCGGGGACTGTGTATG
ACGTGTACTTTAGCCAGCTGCAGGGGTTGGTTGAAAACGCAAAAAGTCCA
GGCCACATGTCACCGAGTGATAGTATCTTACAGCACGCGGTGAGGGCGAG
CGTGAGTGATCAGTTTAGTGTCTTGACAGCTAATATGTTTAAAGGCAAGG
CGCAGGGGGAAATGCCGTTCGATAGTATCAGTGAGCTCATGTCAGAACTG
AAATATTTCGAAGGTGTTCGGGCACAAGCATCAGTGGCAAACAGAACGCT
GATGCAGGTAACGGGTAAGAGCGCGGTGGGGGCGCAACACACGGGTTTTG
GTGGATCGGGGGGGTCGGTTTCGGGGGCGAGAGCTTCGCCTTACAGGGCG
GCGTCACCGGCACGATCGCAGGGTGGTAAGGGGTATCAGGGACGGGTGAT
GACTGTTGCGGAGGAACTCGAGGATGAAACCCAAGAGTTTCAACGCGTGT
ACCAGGCCTCACAGGTTAGAGCGGATCATTCGACAGATTTTAAAAAAGGG
ACTGTCCGTTGTATCGGTGGTACAATACATTGGCGGAAAAGGACCAGTGT
AGGAGTGAGTATGGCTCAAGGTGTTTGA
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