mRNA_L-elsbetiae_contig8025.17010.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig8025.17010.1
Unique NamemRNA_L-elsbetiae_contig8025.17010.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8025.17010.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig8025contigL-elsbetiae_contig8025:6455..7499 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size282
Cds size165
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig8025.17010.1prot_L-elsbetiae_contig8025.17010.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig8025 6455..7382 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816887.6098325-CDS-L-elsbetiae_contig8025:6454..64971622816887.6098325-CDS-L-elsbetiae_contig8025:6454..6497Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8025 6455..6497 -
1691683888.298574-CDS-L-elsbetiae_contig8025:6454..64971691683888.298574-CDS-L-elsbetiae_contig8025:6454..6497Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8025 6455..6497 -
1622816887.6200433-CDS-L-elsbetiae_contig8025:7260..73821622816887.6200433-CDS-L-elsbetiae_contig8025:7260..7382Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8025 7261..7382 -
1691683888.309391-CDS-L-elsbetiae_contig8025:7260..73821691683888.309391-CDS-L-elsbetiae_contig8025:7260..7382Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8025 7261..7382 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816887.6305563-UTR-L-elsbetiae_contig8025:7382..74991622816887.6305563-UTR-L-elsbetiae_contig8025:7382..7499Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8025 7383..7499 -
1691683888.3202913-UTR-L-elsbetiae_contig8025:7382..74991691683888.3202913-UTR-L-elsbetiae_contig8025:7382..7499Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8025 7383..7499 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig8025.17010.1

>prot_L-elsbetiae_contig8025.17010.1 ID=prot_L-elsbetiae_contig8025.17010.1|Name=mRNA_L-elsbetiae_contig8025.17010.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=55bp
MGLTCRPGLLMGRVRGWLLDKQASARERSVRASKRADNAQKEERRRRLAC
YVLED
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mRNA from alignment at L-elsbetiae_contig8025:6455..7499-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig8025.17010.1 ID=mRNA_L-elsbetiae_contig8025.17010.1|Name=mRNA_L-elsbetiae_contig8025.17010.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1045bp|location=Sequence derived from alignment at L-elsbetiae_contig8025:6455..7499- (Laminarionema elsbetiae ELsaHSoW15)
GTGATCGCTAGTTGAAACTACAGCCCAAGAACACTACCCGGTTTAGAACT
GGATAAAGATCATACACGAAACTATATCTGCGGCGGGATCTACATAGACT
AGTCTATATCCGCGATCATGGGTCTGACCTGCAGACCCGGCCTGCTGATG
GGCCGTGTACGGGGTTGGCTCCTCGACAAGCAAGCCAGCGCCCGCGAGCG
TTCCGTGCGAGCGTCGAAGAGGGCCGACAACGCTCAAAAGTGAGTGCTAC
CACTAGTCTCCGGTGCGGAAGAGGGGCGTAGCGGGTCTAGTTTCCCGGCG
CTCCAACATGCGTCTCGTTCTGTGCGTGTAGATAGTCTAGGTGTCCCTCT
CTCCGCTTGCGAGAAGTCTTCTGCAAAATAGCTGTAGTTTCTGCCACACG
TGGCAAGATTCCGAGAGCAGGTGCCTTCATGACAAGGCGCCATCGCCTGG
TAGCCGTCTCAGTAGATGTGGGCGTGAAAGAAAGCCGCCGTTAGTCCCAC
ATCATTTATCTTCCGCGGCGGAACTGCTCACAAATTTTTCGAAGGCACGT
TTCGTGTATGGAGACAACTGATCCTGTGACGACCTGCACACGACAGTTTC
TACCGCAGCTGCCCTCTTTAGAGATGCAGATGGATTTCGAGCATCCGGCG
TTCCATGTGTTAAACAAGGCTAGAAGTTTTTGTCTGAAGCGAGCTAACTA
GATACATGCATACTTGTAGATAAACGTTTTGTTTTTCGTGTAACCGCTAT
ACTACTTTTGTACACAGACTAGATATAGTCTAGTTTTCTTTCCGGTGTGT
GCCATGTGCCACCATCTCGCGGGAGCGTCGGGGGGGAGGCATAGCCCCCC
CCCGGCGTGAAGCCTCTTGTAGACTATACATCTATACATAGAATTGTGTC
GTCGTGCATTTGGCTGTGTTTACTACTATGTAGCTGTGTGTCTTCTGACG
CCCCACCTGGTCTTGCCTGTATCTATATCTGGCCACACCGTATACGCCTC
AGGGAGGAACGCCGCCGCCGGCTGGCGTGCTACGTGCTCGAGGAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig8025:6455..7499-

>mRNA_L-elsbetiae_contig8025.17010.1 ID=mRNA_L-elsbetiae_contig8025.17010.1|Name=mRNA_L-elsbetiae_contig8025.17010.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=330bp|location=Sequence derived from alignment at L-elsbetiae_contig8025:6455..7499- (Laminarionema elsbetiae ELsaHSoW15)
ATGGGTCTGACCTGCAGACCCGGCCTGCTGATGGGCCGTGTACGGGGTTG
GCTCCTCGACAAGCAAGCCAGCGCCCGCGAGCGTTCCGTGCGAGCGTCGA
AGAGGGCCGACAACGCTCAAAAATGGGTCTGACCTGCAGACCCGGCCTGC
TGATGGGCCGTGTACGGGGTTGGCTCCTCGACAAGCAAGCCAGCGCCCGC
GAGCGTTCCGTGCGAGCGTCGAAGAGGGCCGACAACGCTCAAAAGGAGGA
ACGCCGCCGCCGGCTGGCGTGCTACGTGCTCGAGGACGGAGGAACGCCGC
CGCCGGCTGGCGTGCTACGTGCTCGAGGAC
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