mRNA_L-elsbetiae_contig8014.16999.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig8014.16999.1
Unique NamemRNA_L-elsbetiae_contig8014.16999.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8014.16999.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig8014contigL-elsbetiae_contig8014:164..898 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size737
Cds size540
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816886.7036257-UTR-L-elsbetiae_contig8014:163..3581622816886.7036257-UTR-L-elsbetiae_contig8014:163..358Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8014 164..358 +
1691683887.5718946-UTR-L-elsbetiae_contig8014:163..3581691683887.5718946-UTR-L-elsbetiae_contig8014:163..358Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8014 164..358 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816886.7154114-CDS-L-elsbetiae_contig8014:358..8981622816886.7154114-CDS-L-elsbetiae_contig8014:358..898Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8014 359..898 +
1691683887.5837362-CDS-L-elsbetiae_contig8014:358..8981691683887.5837362-CDS-L-elsbetiae_contig8014:358..898Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8014 359..898 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig8014.16999.1prot_L-elsbetiae_contig8014.16999.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig8014 359..898 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig8014.16999.1

>prot_L-elsbetiae_contig8014.16999.1 ID=prot_L-elsbetiae_contig8014.16999.1|Name=mRNA_L-elsbetiae_contig8014.16999.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=180bp
MYLLAAFTPSFVPPLARCTFWWHSLLRFVVSLRNVPSGGIHSFVCSFATR
CTFWWHSLLRLLFRYTMYPVVAFTPSFCCLATQCTLWWHSLLRSVVSLHN
VPSGGIHPFVCCSATQCTLWWHSFLRLLFRLASSLFVPAPNKISPFSVSC
GLVVFCSPTAVFAFVFLRFKMKKISPFLFR
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mRNA from alignment at L-elsbetiae_contig8014:164..898+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig8014.16999.1 ID=mRNA_L-elsbetiae_contig8014.16999.1|Name=mRNA_L-elsbetiae_contig8014.16999.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=735bp|location=Sequence derived from alignment at L-elsbetiae_contig8014:164..898+ (Laminarionema elsbetiae ELsaHSoW15)
CAGAACTGTACTCCTCCAAACATCTTCTATTCCTTACATTTTGCACAGGC
TGAGATGAAGATATTCATCAGGTATGTTTGGGTACTACGGTACAGTACTA
TGTACTATGTACTACTGCTGTGTTCTCCCAGTTCGTCGTGCATATACATG
TATCTTATGTGAAGCTATCCCGCTATCCTTTTTGCGGCTTGCGTAATGTA
CCTTCTGGCGGCATTCACCCCGTCGTTTGTTCCTCCGCTTGCACGATGTA
CCTTCTGGTGGCATTCACTCCTTCGTTTTGTTGTTTCGCTACGCAATGTA
CCCTCTGGTGGCATTCACTCCTTTGTTTGTTCCTTCGCTACACGATGTAC
CTTCTGGTGGCATTCACTCCTTCGTTTGTTGTTTCGCTACACAATGTACC
CTGTGGTGGCATTCACTCCTTCGTTCTGTTGTCTCGCTACACAATGTACC
CTCTGGTGGCATTCACTCCTTCGTTCTGTTGTCTCGCTACACAATGTACC
CTCTGGTGGCATTCACCCCTTTGTTTGTTGTTCTGCTACACAATGTACCC
TCTGGTGGCATTCATTCCTTCGTTTGTTGTTTCGCCTCGCTTCCTCTTTG
TTCGTTCCTGCTCCAAATAAAATATCGCCGTTCTCGGTTTCGTGCGGTTT
GGTCGTTTTTTGCTCTCCCACTGCCGTTTTTGCTTTTGTTTTTCTCCGCT
TCAAAATGAAAAAAATCTCGCCGTTTCTGTTTCGT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig8014:164..898+

>mRNA_L-elsbetiae_contig8014.16999.1 ID=mRNA_L-elsbetiae_contig8014.16999.1|Name=mRNA_L-elsbetiae_contig8014.16999.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1080bp|location=Sequence derived from alignment at L-elsbetiae_contig8014:164..898+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTACCTTCTGGCGGCATTCACCCCGTCGTTTGTTCCTCCGCTTGCACG
ATGTACCTTCTGGTGGCATTCACTCCTTCGTTTTGTTGTTTCGCTACGCA
ATGTACCCTCTGGTGGCATTCACTCCTTTGTTTGTTCCTTCGCTACACGA
TGTACCTTCTGGTGGCATTCACTCCTTCGTTTGTTGTTTCGCTACACAAT
GTACCCTGTGGTGGCATTCACTCCTTCGTTCTGTTGTCTCGCTACACAAT
GTACCCTCTGGTGGCATTCACTCCTTCGTTCTGTTGTCTCGCTACACAAT
GTACCCTCTGGTGGCATTCACCCCTTTGTTTGTTGTTCTGCTACACAATG
TACCCTCTGGTGGCATTCATTCCTTCGTTTGTTGTTTCGCCTCGCTTCCT
CTTTGTTCGTTCCTGCTCCAAATAAAATATCGCCGTTCTCGGTTTCGTGC
GGTTTGGTCGTTTTTTGCTCTCCCACTGCCGTTTTTGCTTTTGTTTTTCT
CCGCTTCAAAATGAAAAAAATCTCGCCGTTTCTGTTTCGTATGTACCTTC
TGGCGGCATTCACCCCGTCGTTTGTTCCTCCGCTTGCACGATGTACCTTC
TGGTGGCATTCACTCCTTCGTTTTGTTGTTTCGCTACGCAATGTACCCTC
TGGTGGCATTCACTCCTTTGTTTGTTCCTTCGCTACACGATGTACCTTCT
GGTGGCATTCACTCCTTCGTTTGTTGTTTCGCTACACAATGTACCCTGTG
GTGGCATTCACTCCTTCGTTCTGTTGTCTCGCTACACAATGTACCCTCTG
GTGGCATTCACTCCTTCGTTCTGTTGTCTCGCTACACAATGTACCCTCTG
GTGGCATTCACCCCTTTGTTTGTTGTTCTGCTACACAATGTACCCTCTGG
TGGCATTCATTCCTTCGTTTGTTGTTTCGCCTCGCTTCCTCTTTGTTCGT
TCCTGCTCCAAATAAAATATCGCCGTTCTCGGTTTCGTGCGGTTTGGTCG
TTTTTTGCTCTCCCACTGCCGTTTTTGCTTTTGTTTTTCTCCGCTTCAAA
ATGAAAAAAATCTCGCCGTTTCTGTTTCGT
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