mRNA_L-elsbetiae_contig800.16990.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig800.16990.1
Unique NamemRNA_L-elsbetiae_contig800.16990.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig800.16990.1 vs. uniprot
Match: A0A6H5K260_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K260_9PHAE)

HSP 1 Score: 132 bits (333), Expect = 3.180e-33
Identity = 75/108 (69.44%), Postives = 79/108 (73.15%), Query Frame = 1 
Query:  157 AKRIKC-------AGRADVGVAWPATTPP--PSVSEEGPPACWGNGAAYLLEPALETPLRKDQVRVDVAEAYSRKPHPDPEVEANIEALWQEQLSKNPLLFNGSKFRL 453
            AKR KC       A  AD        TP   PS + +G  A WG GA YLLEPALETPLR+DQVRVDVAEAYSRKPHPDPEVEANIE LWQEQL+KNPLLFNGSKFRL
Sbjct:  228 AKRAKCVLHSASGAVIADADAVGEPVTPMARPSAAGDGDMA-WGGGAEYLLEPALETPLRRDQVRVDVAEAYSRKPHPDPEVEANIEVLWQEQLAKNPLLFNGSKFRL 334
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BLAST of mRNA_L-elsbetiae_contig800.16990.1 vs. uniprot
Match: D8LHN6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHN6_ECTSI)

HSP 1 Score: 96.3 bits (238), Expect = 9.820e-21
Identity = 49/66 (74.24%), Postives = 51/66 (77.27%), Query Frame = 1 
Query:  256 WGNGAAYLLEPALETPLRKDQVRVDVAEAYSRKPHPDPEVEANIEALWQEQLSKNPLLFNGSKFRL 453
            WG GA YLLEPALETPLR+DQVRVDVAEAYSRKPHPDPE            L+KNPLLFNGSKF L
Sbjct:   14 WGGGAEYLLEPALETPLRRDQVRVDVAEAYSRKPHPDPEA----------LLAKNPLLFNGSKFWL 69
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BLAST of mRNA_L-elsbetiae_contig800.16990.1 vs. uniprot
Match: UPI001C34C9E3 ((large yellow croaker) hypothetical protein n=1 Tax=Larimichthys crocea TaxID=215358 RepID=UPI001C34C9E3)

HSP 1 Score: 55.8 bits (133), Expect = 1.440e-6
Identity = 29/61 (47.54%), Postives = 43/61 (70.49%), Query Frame = 1 
Query:  271 AYLLEPALETPLRKDQVRVDVAEAYSRKPHPDPEVEANIEALWQEQLSKNPLLFNGSKFRL 453
            + LL  A  + L + QV+V+++E+++RK   DP +E  IE +W E++SK P LFNGSKFRL
Sbjct:   59 SVLLHCAAWSGLLESQVQVELSESFNRKT--DPALERQIEEVWTERVSKEPWLFNGSKFRL 117
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BLAST of mRNA_L-elsbetiae_contig800.16990.1 vs. uniprot
Match: A0A6G0I3G8_LARCR (Nucleoside diphosphate-linked moiety X motif 22 n=3 Tax=Larimichthys crocea TaxID=215358 RepID=A0A6G0I3G8_LARCR)

HSP 1 Score: 55.8 bits (133), Expect = 3.020e-6
Identity = 29/61 (47.54%), Postives = 43/61 (70.49%), Query Frame = 1 
Query:  271 AYLLEPALETPLRKDQVRVDVAEAYSRKPHPDPEVEANIEALWQEQLSKNPLLFNGSKFRL 453
            + LL  A  + L + QV+V+++E+++RK   DP +E  IE +W E++SK P LFNGSKFRL
Sbjct:   47 SVLLHCAAWSGLLESQVQVELSESFNRKT--DPALERQIEEVWTERVSKEPWLFNGSKFRL 105
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BLAST of mRNA_L-elsbetiae_contig800.16990.1 vs. uniprot
Match: A0A8K1FPU9_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FPU9_PYTOL)

HSP 1 Score: 55.1 bits (131), Expect = 4.760e-6
Identity = 24/51 (47.06%), Postives = 36/51 (70.59%), Query Frame = 1 
Query:  301 PLRKDQVRVDVAEAYSRKPHPDPEVEANIEALWQEQLSKNPLLFNGSKFRL 453
            P  + +  + ++  ++R+ HPDP+VEA IE +WQE   K+P LFNG+KFRL
Sbjct:   32 PFVRQRTALRLSSRFNRQSHPDPQVEAAIEHVWQEYKQKSPRLFNGTKFRL 82
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BLAST of mRNA_L-elsbetiae_contig800.16990.1 vs. uniprot
Match: UPI001CE14088 (uridine diphosphate glucose pyrophosphatase NUDT22 n=1 Tax=Siniperca chuatsi TaxID=119488 RepID=UPI001CE14088)

HSP 1 Score: 54.7 bits (130), Expect = 7.720e-6
Identity = 29/61 (47.54%), Postives = 42/61 (68.85%), Query Frame = 1 
Query:  271 AYLLEPALETPLRKDQVRVDVAEAYSRKPHPDPEVEANIEALWQEQLSKNPLLFNGSKFRL 453
            + LL  A    L + QV+V+++E ++R+   DP +E  IEA+W E++SK P LFNGSKFRL
Sbjct:    7 SVLLHCAAWRGLLEPQVQVELSERFNRRT--DPALEREIEAVWTERVSKEPWLFNGSKFRL 65
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BLAST of mRNA_L-elsbetiae_contig800.16990.1 vs. uniprot
Match: UPI001BD59AAB (uridine diphosphate glucose pyrophosphatase NUDT22 isoform X1 n=2 Tax=Cheilinus undulatus TaxID=241271 RepID=UPI001BD59AAB)

HSP 1 Score: 54.3 bits (129), Expect = 1.000e-5
Identity = 29/61 (47.54%), Postives = 40/61 (65.57%), Query Frame = 1 
Query:  271 AYLLEPALETPLRKDQVRVDVAEAYSRKPHPDPEVEANIEALWQEQLSKNPLLFNGSKFRL 453
            + LL  A    L K QV V++++ Y+R+   DP +E  IE +W E++SK P LFNGSKFRL
Sbjct:    6 SLLLHCAAWRGLLKSQVHVELSDRYNRQT--DPTLERQIEEVWTERVSKEPWLFNGSKFRL 64
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BLAST of mRNA_L-elsbetiae_contig800.16990.1 vs. uniprot
Match: UPI001888E2E7 (uridine diphosphate glucose pyrophosphatase NUDT22 n=1 Tax=Pungitius pungitius TaxID=134920 RepID=UPI001888E2E7)

HSP 1 Score: 53.5 bits (127), Expect = 1.830e-5
Identity = 28/61 (45.90%), Postives = 42/61 (68.85%), Query Frame = 1 
Query:  271 AYLLEPALETPLRKDQVRVDVAEAYSRKPHPDPEVEANIEALWQEQLSKNPLLFNGSKFRL 453
            + LL  A  + L + QV+ +++E+++R+   DP VE  IE +W E++SK P LFNGSKFRL
Sbjct:    6 SVLLHCAAWSGLLESQVQAELSESFNRQT--DPTVEHQIEEVWTERVSKEPWLFNGSKFRL 64
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BLAST of mRNA_L-elsbetiae_contig800.16990.1 vs. uniprot
Match: A0A3Q3EN52_9LABR (Nudix hydrolase 22 n=1 Tax=Labrus bergylta TaxID=56723 RepID=A0A3Q3EN52_9LABR)

HSP 1 Score: 52.8 bits (125), Expect = 3.120e-5
Identity = 27/61 (44.26%), Postives = 41/61 (67.21%), Query Frame = 1 
Query:  271 AYLLEPALETPLRKDQVRVDVAEAYSRKPHPDPEVEANIEALWQEQLSKNPLLFNGSKFRL 453
            + LL  A    L + QV+V++++ ++R+   DP +E  IE +W E++SK P LFNGSKFRL
Sbjct:    6 SVLLHCAAWRGLLESQVQVELSDRFNRRT--DPTLECQIEEVWSERVSKEPWLFNGSKFRL 64
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BLAST of mRNA_L-elsbetiae_contig800.16990.1 vs. uniprot
Match: UPI0009B36DF9 (LOW QUALITY PROTEIN: uridine diphosphate glucose pyrophosphatase n=1 Tax=Labrus bergylta TaxID=56723 RepID=UPI0009B36DF9)

HSP 1 Score: 52.8 bits (125), Expect = 3.500e-5
Identity = 27/61 (44.26%), Postives = 41/61 (67.21%), Query Frame = 1 
Query:  271 AYLLEPALETPLRKDQVRVDVAEAYSRKPHPDPEVEANIEALWQEQLSKNPLLFNGSKFRL 453
            + LL  A    L + QV+V++++ ++R+   DP +E  IE +W E++SK P LFNGSKFRL
Sbjct:    6 SVLLHCAAWRGLLESQVQVELSDRFNRRT--DPTLECQIEEVWSERVSKEPWLFNGSKFRL 64
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig800.16990.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 22
Match NameE-valueIdentityDescription
A0A6H5K260_9PHAE3.180e-3369.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LHN6_ECTSI9.820e-2174.24Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
UPI001C34C9E31.440e-647.54(large yellow croaker) hypothetical protein n=1 Ta... [more]
A0A6G0I3G8_LARCR3.020e-647.54Nucleoside diphosphate-linked moiety X motif 22 n=... [more]
A0A8K1FPU9_PYTOL4.760e-647.06Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
UPI001CE140887.720e-647.54uridine diphosphate glucose pyrophosphatase NUDT22... [more]
UPI001BD59AAB1.000e-547.54uridine diphosphate glucose pyrophosphatase NUDT22... [more]
UPI001888E2E71.830e-545.90uridine diphosphate glucose pyrophosphatase NUDT22... [more]
A0A3Q3EN52_9LABR3.120e-544.26Nudix hydrolase 22 n=1 Tax=Labrus bergylta TaxID=5... [more]
UPI0009B36DF93.500e-544.26LOW QUALITY PROTEIN: uridine diphosphate glucose p... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig800contigL-elsbetiae_contig800:29507..31370 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score97.4
Seed ortholog evalue5.9e-18
Seed eggNOG ortholog2880.D8LHN6
Preferred nameNUDT22
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0008150,GO:0008768,GO:0009987,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0031974,GO:0031981,GO:0042221,GO:0043167,GO:0043169,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0046872,GO:0050896,GO:0051716,GO:0052751,GO:0060359,GO:0070013,GO:0070887,GO:0071242,GO:1901698,GO:1901699
EggNOG free text desc.GDP-mannose hydrolase activity
EggNOG OGs28JDX@1,2QRSW@2759
Ec32 ortholog descriptionSirtuin histone deacetylase
Ec32 orthologEc-26_003780.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size455
Cds size453
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816885.881571-CDS-L-elsbetiae_contig800:29506..298781622816885.881571-CDS-L-elsbetiae_contig800:29506..29878Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig800 29507..29878 +
1691683887.0467832-CDS-L-elsbetiae_contig800:29506..298781691683887.0467832-CDS-L-elsbetiae_contig800:29506..29878Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig800 29507..29878 +
1622816885.8933754-CDS-L-elsbetiae_contig800:31288..313691622816885.8933754-CDS-L-elsbetiae_contig800:31288..31369Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig800 31289..31369 +
1691683887.0632095-CDS-L-elsbetiae_contig800:31288..313691691683887.0632095-CDS-L-elsbetiae_contig800:31288..31369Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig800 31289..31369 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig800.16990.1prot_L-elsbetiae_contig800.16990.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig800 29507..31369 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig800.16990.1

>prot_L-elsbetiae_contig800.16990.1 ID=prot_L-elsbetiae_contig800.16990.1|Name=mRNA_L-elsbetiae_contig800.16990.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=151bp
SGGCGGGDSPLGRRAREESPGGDSSSSGSSGGGGGSAGDGHAALGGGEGR
SEAKRIKCAGRADVGVAWPATTPPPSVSEEGPPACWGNGAAYLLEPALET
PLRKDQVRVDVAEAYSRKPHPDPEVEANIEALWQEQLSKNPLLFNGSKFR
L
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mRNA from alignment at L-elsbetiae_contig800:29507..31370+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig800.16990.1 ID=mRNA_L-elsbetiae_contig800.16990.1|Name=mRNA_L-elsbetiae_contig800.16990.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1864bp|location=Sequence derived from alignment at L-elsbetiae_contig800:29507..31370+ (Laminarionema elsbetiae ELsaHSoW15)
AGCGGCGGCTGCGGCGGCGGCGACTCTCCGCTTGGGCGACGCGCCCGCGA
GGAAAGCCCCGGCGGTGACAGCAGCAGTAGCGGCAGCAGCGGCGGCGGCG
GCGGCAGTGCCGGTGACGGGCACGCCGCCCTGGGGGGTGGAGAAGGCAGG
TCAGAGGCGAAGAGGATCAAGTGCGCGGGCCGCGCGGACGTCGGCGTCGC
TTGGCCGGCTACAACGCCGCCGCCGTCGGTCTCGGAGGAGGGGCCGCCGG
CCTGCTGGGGCAACGGCGCGGCGTACCTGCTGGAGCCGGCGCTGGAGACC
CCGCTGAGGAAGGACCAAGTGCGCGTGGACGTCGCCGAGGCGTACTCGAG
AAAACCTCACCCAGACCCGGAGGTAGGTCGGAGGCTCGAGGCGCGAGAGG
TGGGAAGTAAGTGGGAGATGTGCCGCGCGCCGTGTGCGGTCGGTGTACAT
ACAGAGACATCTCGCCTAGTGAAATCACTGGCGTCGTATCATGCGTGTGT
TTGTTGCGTGCTTTCGTTCCATGTATTCGGGGTCTGTCCACACGTTTCGG
TGTGGTGTACTCCACGTTTCGGTGCATGTTATCTGTATGACAACGAGACG
TATCCGCCGGTCGCACTCAGGAGGGGGCAAACAAACACTGTTTTTGTTTT
TCTTCTCTTTCCTCTTCTTTTTTGACCCACCTTTTCCTCCTGCGGTGCTT
GCCCTGATTTTTAATTCATGTATACAAATGTCAGCAGTCTACGTCTAATC
TGATGAAGAAGTCGTTCCAGAGGGACTGTCGTAAGCGTACTAACCCCCTG
TTTCCCATCCCAGATATATTCGCACAAAATCAGTATACGTGAACTAAAAT
CAGAACTTGTAGTTCAATTAAAAACCGTTAAAATTTAGATTTTTATCGCG
AGAAGGGTTCGGTCGTCCCTTTCGCTCGTCAACGATAAAGTCGACGTGTG
TCTACTCACGAGCTTTTCAGCTTTTTTCGCTTTCTACTGCTAAATTGTTT
TTTTTTTTTTAATTTTCATCCCAGAGAGATTCAATTTCACGATTCTGATG
CGAACGGGTTTCGAGCTTAACCACTAGGCCACCGGAGCGACCGATGCGTG
ATTGAAAAACTCTCGGTGTTCGATTGTGTTTTCTGACGAATGCTTTGCTA
CGATTTGAGTTGCCAAGCGCTACCCAACATCATCCTCCTCCCCGTGTAGA
AGTATATGATCGGTATGCCGCTTGAGTGCCCGTCGGCTCGCGCGTATGGA
TCGTCATGTAAAATGTAGAGGCTATCGTCTAGCCTTGCCGCTGGTGTGTG
TGGGCTCCGAAGGAAAAAAAAAACGGCTTTTCATCGCCATCGCCTGTTCG
AAGACGTTTTGTGGGTGTGTTGTTTGGCAGGGTCGAGGTTTTGATCAGGC
GGTCACGGAGCGAGGCGTCCACGGTTTGGCGGCGCTTTTCCCTCGTGTGG
CTTTGTATGGCGTTGTACGGTCTCCATCCAGCGGAAGCTCTCGTTGCGTT
GCAAGCGTGTGAGGTCTCTTCTGCTGGTTTTCTTCGGGCTGACCCACCAC
CAAGAAGGGAATAAAAAGAAAACGTAGAAGGCGTAAAAGTAGGCTATTCA
GATCAAGCAGTATATTTATTCTCCGTGGAGACGGTGAGAATGAAATTTGC
CATCCCGACCGCTGCGTGTGGATGTGATTGACTGATTGCTCTCTCTCTCT
CTCTCTCTTTCTCTCTCTTTCTCTCTCTCTCTCTCTCTCTCTCTCCCCGC
CCTGTATTCCACGCCCTCTGGCAAACATGCAGGTGGAAGCGAACATAGAA
GCCCTCTGGCAGGAGCAGCTTTCCAAAAACCCCCTCCTTTTCAACGGGTC
CAAGTTTCGGCTGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig800:29507..31370+

>mRNA_L-elsbetiae_contig800.16990.1 ID=mRNA_L-elsbetiae_contig800.16990.1|Name=mRNA_L-elsbetiae_contig800.16990.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=906bp|location=Sequence derived from alignment at L-elsbetiae_contig800:29507..31370+ (Laminarionema elsbetiae ELsaHSoW15)
AGCGGCGGCTGCGGCGGCGGCGACTCTCCGCTTGGGCGACGCGCCCGCGA
GGAAAGCCCCGGCGGTGACAGCAGCAGTAGCGGCAGCAGCGGCGGCGGCG
GCGGCAGTGCCGGTGACGGGCACGCCGCCCTGGGGGGTGGAGAAGGCAGG
TCAGAGGCGAAGAGGATCAAGTGCGCGGGCCGCGCGGACGTCGGCGTCGC
TTGGCCGGCTACAACGCCGCCGCCGTCGGTCTCGGAGGAGGGGCCGCCGG
CCTGCTGGGGCAACGGCGCGGCGTACCTGCTGGAGCCGGCGCTGGAGACC
CCGCTGAGGAAGGACCAAGTGCGCGTGGACGTCGCCGAGGCGTACTCGAG
AAAACCTCACCCAGACCCGGAGAGCGGCGGCTGCGGCGGCGGCGACTCTC
CGCTTGGGCGACGCGCCCGCGAGGAAAGCCCCGGCGGTGACAGCAGCAGT
AGCGGCAGCAGCGGCGGCGGCGGCGGCAGTGCCGGTGACGGGCACGCCGC
CCTGGGGGGTGGAGAAGGCAGGTCAGAGGCGAAGAGGATCAAGTGCGCGG
GCCGCGCGGACGTCGGCGTCGCTTGGCCGGCTACAACGCCGCCGCCGTCG
GTCTCGGAGGAGGGGCCGCCGGCCTGCTGGGGCAACGGCGCGGCGTACCT
GCTGGAGCCGGCGCTGGAGACCCCGCTGAGGAAGGACCAAGTGCGCGTGG
ACGTCGCCGAGGCGTACTCGAGAAAACCTCACCCAGACCCGGAGGTGGAA
GCGAACATAGAAGCCCTCTGGCAGGAGCAGCTTTCCAAAAACCCCCTCCT
TTTCAACGGGTCCAAGTTTCGGCTGGTGGAAGCGAACATAGAAGCCCTCT
GGCAGGAGCAGCTTTCCAAAAACCCCCTCCTTTTCAACGGGTCCAAGTTT
CGGCTG
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