mRNA_L-elsbetiae_contig8.16979.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig8.16979.1
Unique NamemRNA_L-elsbetiae_contig8.16979.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig8.16979.1 vs. uniprot
Match: D8LBG9_ECTSI (NADPH:adrenodoxin oxidoreductase, mitochondrial n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBG9_ECTSI)

HSP 1 Score: 56.2 bits (134), Expect = 8.450e-8
Identity = 34/46 (73.91%), Postives = 36/46 (78.26%), Query Frame = 1 
Query:    1 CTAGR-ARTAIVRGKATAAAPAGRPLRVCVVGSGPAGFYVTKYLLK 135
            C + R A TAI R  AT  + AGRPLRVCVVGSGPAGFYVTKYLLK
Sbjct:   33 CVSARTAGTAIQRPTATDVS-AGRPLRVCVVGSGPAGFYVTKYLLK 77
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BLAST of mRNA_L-elsbetiae_contig8.16979.1 vs. uniprot
Match: A0A6H5L1K8_9PHAE (Pyr_redox_2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1K8_9PHAE)

HSP 1 Score: 54.7 bits (130), Expect = 2.120e-7
Identity = 25/25 (100.00%), Postives = 25/25 (100.00%), Query Frame = 1 
Query:   61 AGRPLRVCVVGSGPAGFYVTKYLLK 135
            AGRPLRVCVVGSGPAGFYVTKYLLK
Sbjct:   53 AGRPLRVCVVGSGPAGFYVTKYLLK 77
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BLAST of mRNA_L-elsbetiae_contig8.16979.1 vs. uniprot
Match: A0A835ZC91_9STRA (NADPH:adrenodoxin oxidoreductase, mitochondrial n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZC91_9STRA)

HSP 1 Score: 48.1 bits (113), Expect = 6.090e-5
Identity = 21/22 (95.45%), Postives = 21/22 (95.45%), Query Frame = 1 
Query:   70 PLRVCVVGSGPAGFYVTKYLLK 135
            PLRVCVVGSGPAGFY TKYLLK
Sbjct:   53 PLRVCVVGSGPAGFYTTKYLLK 74
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8.16979.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LBG9_ECTSI8.450e-873.91NADPH:adrenodoxin oxidoreductase, mitochondrial n=... [more]
A0A6H5L1K8_9PHAE2.120e-7100.00Pyr_redox_2 domain-containing protein n=1 Tax=Ecto... [more]
A0A835ZC91_9STRA6.090e-595.45NADPH:adrenodoxin oxidoreductase, mitochondrial n=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig8contigL-elsbetiae_contig8:70729..70893 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size165
Cds size165
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816884.8574781-CDS-L-elsbetiae_contig8:70728..708931622816884.8574781-CDS-L-elsbetiae_contig8:70728..70893Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8 70729..70893 -
1691683886.345747-CDS-L-elsbetiae_contig8:70728..708931691683886.345747-CDS-L-elsbetiae_contig8:70728..70893Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8 70729..70893 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig8.16979.1prot_L-elsbetiae_contig8.16979.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig8 70729..70893 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig8.16979.1

>prot_L-elsbetiae_contig8.16979.1 ID=prot_L-elsbetiae_contig8.16979.1|Name=mRNA_L-elsbetiae_contig8.16979.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=55bp
CTAGRARTAIVRGKATAAAPAGRPLRVCVVGSGPAGFYVTKYLLKASEWM
RRES*
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mRNA from alignment at L-elsbetiae_contig8:70729..70893-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig8.16979.1 ID=mRNA_L-elsbetiae_contig8.16979.1|Name=mRNA_L-elsbetiae_contig8.16979.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=165bp|location=Sequence derived from alignment at L-elsbetiae_contig8:70729..70893- (Laminarionema elsbetiae ELsaHSoW15)
TGCACCGCTGGCCGAGCAAGAACAGCCATCGTGCGGGGCAAGGCAACTGC
TGCTGCCCCAGCTGGACGACCTCTTCGTGTATGTGTAGTTGGGTCTGGGC
CTGCTGGGTTTTATGTCACGAAATACCTACTGAAGGCGAGTGAGTGGATG
CGAAGAGAGTCATGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig8:70729..70893-

>mRNA_L-elsbetiae_contig8.16979.1 ID=mRNA_L-elsbetiae_contig8.16979.1|Name=mRNA_L-elsbetiae_contig8.16979.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=330bp|location=Sequence derived from alignment at L-elsbetiae_contig8:70729..70893- (Laminarionema elsbetiae ELsaHSoW15)
TGCACCGCTGGCCGAGCAAGAACAGCCATCGTGCGGGGCAAGGCAACTGC
TGCTGCCCCAGCTGGACGACCTCTTCGTGTATGTGTAGTTGGGTCTGGGC
CTGCTGGGTTTTATGTCACGAAATACCTACTGAAGGCGAGTGAGTGGATG
CGAAGAGAGTCATGATGCACCGCTGGCCGAGCAAGAACAGCCATCGTGCG
GGGCAAGGCAACTGCTGCTGCCCCAGCTGGACGACCTCTTCGTGTATGTG
TAGTTGGGTCTGGGCCTGCTGGGTTTTATGTCACGAAATACCTACTGAAG
GCGAGTGAGTGGATGCGAAGAGAGTCATGA
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