mRNA_L-elsbetiae_contig799.16961.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig799.16961.1
Unique NamemRNA_L-elsbetiae_contig799.16961.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig799.16961.1 vs. uniprot
Match: A0A6H5KP85_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP85_9PHAE)

HSP 1 Score: 60.5 bits (145), Expect = 4.590e-8
Identity = 28/38 (73.68%), Postives = 33/38 (86.84%), Query Frame = 1 
Query:  442 DPTAASHAYLSEFLGMTEEELQQLSAKYLSLPANRRGP 555
            DPTAA+H +L+EFL M+EEEL+QLSAKY SLP  RRGP
Sbjct:   32 DPTAAAHGFLTEFLDMSEEELRQLSAKYQSLPPGRRGP 69
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig799.16961.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KP85_9PHAE4.590e-873.68Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig799contigL-elsbetiae_contig799:21790..24077 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size556
Cds size555
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816882.6957886-CDS-L-elsbetiae_contig799:21789..222871622816882.6957886-CDS-L-elsbetiae_contig799:21789..22287Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig799 21790..22287 +
1691683884.672966-CDS-L-elsbetiae_contig799:21789..222871691683884.672966-CDS-L-elsbetiae_contig799:21789..22287Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig799 21790..22287 +
1622816882.71183-CDS-L-elsbetiae_contig799:24020..240771622816882.71183-CDS-L-elsbetiae_contig799:24020..24077Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig799 24021..24077 +
1691683884.684924-CDS-L-elsbetiae_contig799:24020..240771691683884.684924-CDS-L-elsbetiae_contig799:24020..24077Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig799 24021..24077 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig799.16961.1prot_L-elsbetiae_contig799.16961.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig799 21790..24077 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig799.16961.1

>prot_L-elsbetiae_contig799.16961.1 ID=prot_L-elsbetiae_contig799.16961.1|Name=mRNA_L-elsbetiae_contig799.16961.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=185bp
QVKHKQPGCVRLVFGTNAMRPPYILLLASPHDPRVSGFCSPPSPFVPQHP
APKLQLRSGHAAPSRRTARTSSTPAASCGRTHHETTRQRGSTLGAVGAAR
RNRPLRWIGRSASARLAQHASSHRSSRASSSTGSGERGPRSASAVPNDPT
AASHAYLSEFLGMTEEELQQLSAKYLSLPANRRGP
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mRNA from alignment at L-elsbetiae_contig799:21790..24077+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig799.16961.1 ID=mRNA_L-elsbetiae_contig799.16961.1|Name=mRNA_L-elsbetiae_contig799.16961.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2288bp|location=Sequence derived from alignment at L-elsbetiae_contig799:21790..24077+ (Laminarionema elsbetiae ELsaHSoW15)
CAAGTCAAGCACAAACAGCCAGGCTGCGTAAGGCTTGTCTTTGGCACGAA
CGCTATGAGACCGCCCTACATCTTACTGCTTGCCAGCCCGCATGATCCAC
GGGTATCAGGGTTCTGTTCGCCACCTTCGCCGTTCGTCCCTCAGCACCCT
GCACCGAAATTGCAGCTCCGGTCTGGTCACGCCGCACCCAGCCGAAGAAC
GGCCCGCACCAGCAGCACACCCGCCGCTTCGTGTGGGCGCACCCACCACG
AGACTACGCGACAACGAGGATCAACACTAGGTGCTGTAGGAGCGGCTAGG
AGGAATCGGCCGTTGCGATGGATAGGGCGTTCTGCGTCAGCGCGGTTGGC
GCAACACGCATCGTCACACCGCAGCAGTCGCGCAAGTAGCAGCACCGGCA
GTGGGGAGAGAGGTCCTAGAAGCGCCAGCGCCGTGCCAAATGACCCCACC
GCGGCTTCCCATGCCTACCTCTCTGAGTTTCTGGGCATGACGGAGGAGGT
GAGCACCTGCTACACACTAGATACAAGCTTCGGTGGTGTTTCGTCATCAT
GTGTACACAATCATGGCTGTGCACAGCAGGGTAGGTTTTATGCACATAGA
CTATGTATGTAGTAGTTGTTCTTGTGGCGCAAGGCGAGCCAGAATATCGG
GGAGATGGAATGTACATCTGTATGCACACCGCACGTGCAAACGGGGCAGA
ACAAATGCGGTGGTCTACCCGTGGGATACCATCAGTATTTCGTGTGTTCC
TCCCCCCATAGACGAATCTCTGCATTCGTGGCCATTTCATGCGTCCGACG
CTCGCGCACACAATGTTTGGGAGGCAAGCTCATCACGGTAAAAAATAGTA
AACGGTTATCCTTTTACCTGGGTGGCTGAGTGGCCCTGACCGTTACAAAA
GACAAGCCATCTTTTTTGCGTGTTGTTGGAGTGTGCAATATGGCTTGCGG
CGACGGGGGTTGTTTCGTGCCGCGGCGCGCGGGAGTTACAAGTAATTGTC
CCGCGTCCGTTGGTTGTATCAGATTGATTTACTCATACCTTCAAGCAATC
AAGCGTCCATGCATACGAATGATGCTATCGCTTCTGTTTTTGTGGCCTAG
TTGTGGCCTAGGCGTTTAACGCAGTATGCATTCGCCGGGTTCAACTTTGT
AGGGCATGCACGCATCCGCCCTGGCCAGCTGCAGCATGGGTTCTACAGCA
AGCGCCCGAAACTACCATACAATAGTCTAGTAGTCTTCCGTGTGTAGCTG
CCGGAAGTGTCATGCGACACGTACATCGGGATGGATGATGAATGACTGCA
GCGCCTCGTAATTTCGAGTCAACCTTTGCAGCGGGTCCAGCTTTTAGCTT
GTGCGTCTAAAATACGTATGTTATCACATGTATGTATGTATTTATATCTA
GGAGCATTTTTTATATTTTTTATGGGCAACGGCCAAAACAAGGTACCTTG
TGGTCAGGCGGCCAAAACAGGATATATATGTGGCACCGACCTGAAACGTG
CAGGGCCTACCAAGCCCAATATACGAAGGGTCTTGGAGGCTGTCCCATGA
CCATGGAAATAGAGTCTGACCCGTGCACAGCATTATTAAAGCCAAGAATG
TAAATCTACATGCATACATGCCTGGGGGCGGGGTAGACACTGCGCCGTGC
AACTGCAACGACTTGACCTCGTTTGTACAGTGCTGTGACGGCGGGACTTT
TCAGTTGGCTTATTGGGGTAGGGTGAGTTAGGTGGTTTGGGGAGCATCCG
CACGAGAAAATGTAAGCAGAAGGGGTACTTTTTTTCGTGGGCCATCAGGT
TGCACTAGGGCCCTGTTCCGGGACAAAGAGCCCGGCTTTCCGGCCAAAAG
AGGGTGAACGAGCGGCAAAATGAGGTGTAGCCGGCAGGTGAGTTGGCCAC
GCGAAGGTGTGCCTTGTTCTTTTCCGGCCTAAAGAGGGTGCTCGGTAGGA
GATATCACTTGAACACGGAGTAGGACACCCTGTTTTGGCCGGAAAAATAT
AAGGTAACCTTGTTGTGGCCGTTGCCCTTATATATTTCATGCCTGAAACA
CATCAACCGTTGTCAGATGCGGCCAATTCTTTATTGCAAGCAACACACCG
GAAATTGTTACCAAACCCGGCTCGCTCCTCCCCAAATCCTGGCTGCCATC
GATCGCGCGCCATCCCATCCCCAAAACGAAAAAAAAACACACGCGCACAC
ACGACGCACACACACACACACACACACACAGGAGCTCCAACAGCTGTCGG
CCAAGTACCTGTCGCTACCCGCGAATCGAAGAGGCCCC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig799:21790..24077+

>mRNA_L-elsbetiae_contig799.16961.1 ID=mRNA_L-elsbetiae_contig799.16961.1|Name=mRNA_L-elsbetiae_contig799.16961.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1110bp|location=Sequence derived from alignment at L-elsbetiae_contig799:21790..24077+ (Laminarionema elsbetiae ELsaHSoW15)
CAAGTCAAGCACAAACAGCCAGGCTGCGTAAGGCTTGTCTTTGGCACGAA
CGCTATGAGACCGCCCTACATCTTACTGCTTGCCAGCCCGCATGATCCAC
GGGTATCAGGGTTCTGTTCGCCACCTTCGCCGTTCGTCCCTCAGCACCCT
GCACCGAAATTGCAGCTCCGGTCTGGTCACGCCGCACCCAGCCGAAGAAC
GGCCCGCACCAGCAGCACACCCGCCGCTTCGTGTGGGCGCACCCACCACG
AGACTACGCGACAACGAGGATCAACACTAGGTGCTGTAGGAGCGGCTAGG
AGGAATCGGCCGTTGCGATGGATAGGGCGTTCTGCGTCAGCGCGGTTGGC
GCAACACGCATCGTCACACCGCAGCAGTCGCGCAAGTAGCAGCACCGGCA
GTGGGGAGAGAGGTCCTAGAAGCGCCAGCGCCGTGCCAAATGACCCCACC
GCGGCTTCCCATGCCTACCTCTCTGAGTTTCTGGGCATGACGGAGGAGCA
AGTCAAGCACAAACAGCCAGGCTGCGTAAGGCTTGTCTTTGGCACGAACG
CTATGAGACCGCCCTACATCTTACTGCTTGCCAGCCCGCATGATCCACGG
GTATCAGGGTTCTGTTCGCCACCTTCGCCGTTCGTCCCTCAGCACCCTGC
ACCGAAATTGCAGCTCCGGTCTGGTCACGCCGCACCCAGCCGAAGAACGG
CCCGCACCAGCAGCACACCCGCCGCTTCGTGTGGGCGCACCCACCACGAG
ACTACGCGACAACGAGGATCAACACTAGGTGCTGTAGGAGCGGCTAGGAG
GAATCGGCCGTTGCGATGGATAGGGCGTTCTGCGTCAGCGCGGTTGGCGC
AACACGCATCGTCACACCGCAGCAGTCGCGCAAGTAGCAGCACCGGCAGT
GGGGAGAGAGGTCCTAGAAGCGCCAGCGCCGTGCCAAATGACCCCACCGC
GGCTTCCCATGCCTACCTCTCTGAGTTTCTGGGCATGACGGAGGAGGAGC
TCCAACAGCTGTCGGCCAAGTACCTGTCGCTACCCGCGAATCGAAGAGGC
CCCGAGCTCCAACAGCTGTCGGCCAAGTACCTGTCGCTACCCGCGAATCG
AAGAGGCCCC
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