mRNA_L-elsbetiae_contig7987.16958.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7987.16958.1
Unique NamemRNA_L-elsbetiae_contig7987.16958.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7987.16958.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7987contigL-elsbetiae_contig7987:3069..3613 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size545
Cds size348
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816882.5300143-UTR-L-elsbetiae_contig7987:3068..32651622816882.5300143-UTR-L-elsbetiae_contig7987:3068..3265Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7987 3069..3265 +
1691683884.558412-UTR-L-elsbetiae_contig7987:3068..32651691683884.558412-UTR-L-elsbetiae_contig7987:3068..3265Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7987 3069..3265 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816882.5458248-CDS-L-elsbetiae_contig7987:3265..36131622816882.5458248-CDS-L-elsbetiae_contig7987:3265..3613Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7987 3266..3613 +
1691683884.5691154-CDS-L-elsbetiae_contig7987:3265..36131691683884.5691154-CDS-L-elsbetiae_contig7987:3265..3613Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7987 3266..3613 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7987.16958.1prot_L-elsbetiae_contig7987.16958.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7987 3266..3613 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7987.16958.1

>prot_L-elsbetiae_contig7987.16958.1 ID=prot_L-elsbetiae_contig7987.16958.1|Name=mRNA_L-elsbetiae_contig7987.16958.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=116bp
MYNEWLGFIGSLRRVLVGETNGIEYGIGECLGGAVVRVRVTEPLLYFTYK
YSPFFSRRQSDFIVVKRITIENEQINYKSRKQHHSHPSQSEINMNVELFI
TATTFVVYTTFEESF*
back to top

mRNA from alignment at L-elsbetiae_contig7987:3069..3613+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7987.16958.1 ID=mRNA_L-elsbetiae_contig7987.16958.1|Name=mRNA_L-elsbetiae_contig7987.16958.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=545bp|location=Sequence derived from alignment at L-elsbetiae_contig7987:3069..3613+ (Laminarionema elsbetiae ELsaHSoW15)
TTTACTCACGAAGTCGCTTTCAATTTTGCCAGGAACGAATGTGAGAAAAA
ACTCGCTTCGCTGGGGCTCGAACCCGGGACCTGGTGCATTAGAAGGTTGC
ATGGATACCAACTAGACTACCGGGGCGACCGGCATACGTGTAGTGTATCT
CTGTAGTGCGCGCACAAACTCCTCTGGCGTTATTGACTTGACTCAGCATG
TACAACGAATGGCTGGGTTTTATCGGTAGTCTACGTCGGGTTTTGGTCGG
TGAAACAAATGGGATAGAGTATGGAATCGGGGAATGTTTGGGGGGGGCGG
TGGTTAGGGTTAGGGTTACGGAACCCCTACTCTATTTCACATATAAATAT
TCCCCTTTTTTCTCGCGAAGGCAGTCCGATTTTATTGTGGTGAAGAGAAT
TACTATTGAAAATGAACAAATCAACTACAAGTCCCGGAAGCAGCACCATA
GTCATCCCTCGCAGTCCGAGATAAACATGAACGTTGAACTGTTCATCACT
GCAACCACATTTGTTGTTTACACTACTTTCGAGGAATCCTTTTGA
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig7987:3069..3613+

>mRNA_L-elsbetiae_contig7987.16958.1 ID=mRNA_L-elsbetiae_contig7987.16958.1|Name=mRNA_L-elsbetiae_contig7987.16958.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=696bp|location=Sequence derived from alignment at L-elsbetiae_contig7987:3069..3613+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTACAACGAATGGCTGGGTTTTATCGGTAGTCTACGTCGGGTTTTGGT
CGGTGAAACAAATGGGATAGAGTATGGAATCGGGGAATGTTTGGGGGGGG
CGGTGGTTAGGGTTAGGGTTACGGAACCCCTACTCTATTTCACATATAAA
TATTCCCCTTTTTTCTCGCGAAGGCAGTCCGATTTTATTGTGGTGAAGAG
AATTACTATTGAAAATGAACAAATCAACTACAAGTCCCGGAAGCAGCACC
ATAGTCATCCCTCGCAGTCCGAGATAAACATGAACGTTGAACTGTTCATC
ACTGCAACCACATTTGTTGTTTACACTACTTTCGAGGAATCCTTTTGAAT
GTACAACGAATGGCTGGGTTTTATCGGTAGTCTACGTCGGGTTTTGGTCG
GTGAAACAAATGGGATAGAGTATGGAATCGGGGAATGTTTGGGGGGGGCG
GTGGTTAGGGTTAGGGTTACGGAACCCCTACTCTATTTCACATATAAATA
TTCCCCTTTTTTCTCGCGAAGGCAGTCCGATTTTATTGTGGTGAAGAGAA
TTACTATTGAAAATGAACAAATCAACTACAAGTCCCGGAAGCAGCACCAT
AGTCATCCCTCGCAGTCCGAGATAAACATGAACGTTGAACTGTTCATCAC
TGCAACCACATTTGTTGTTTACACTACTTTCGAGGAATCCTTTTGA
back to top