mRNA_L-elsbetiae_contig7982.16953.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7982.16953.1
Unique NamemRNA_L-elsbetiae_contig7982.16953.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig7982.16953.1 vs. uniprot
Match: A0A6H5L3H7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3H7_9PHAE)

HSP 1 Score: 121 bits (304), Expect = 5.040e-33
Identity = 57/60 (95.00%), Postives = 58/60 (96.67%), Query Frame = 1 
Query:    1 MGQRHGKAVYDSAAKPFLNLSLAAVGTLWETFNDVADGFGINRHEFTEICAELGEELQLN 180
            MGQRHGKAVYDSAAKPFLNLSLAAVGTLWETFNDVADGFGIN HEF EIC+ELGEELQLN
Sbjct:    1 MGQRHGKAVYDSAAKPFLNLSLAAVGTLWETFNDVADGFGINLHEFLEICSELGEELQLN 60
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BLAST of mRNA_L-elsbetiae_contig7982.16953.1 vs. uniprot
Match: D7FR21_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FR21_ECTSI)

HSP 1 Score: 121 bits (304), Expect = 1.020e-30
Identity = 57/60 (95.00%), Postives = 58/60 (96.67%), Query Frame = 1 
Query:    1 MGQRHGKAVYDSAAKPFLNLSLAAVGTLWETFNDVADGFGINRHEFTEICAELGEELQLN 180
            MGQRHGKAVYDSAAKPFLNLSLAAVGTLWETFNDVADGFGIN HEF EIC+ELGEELQLN
Sbjct:    1 MGQRHGKAVYDSAAKPFLNLSLAAVGTLWETFNDVADGFGINLHEFLEICSELGEELQLN 60
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BLAST of mRNA_L-elsbetiae_contig7982.16953.1 vs. uniprot
Match: K3XBQ5_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3XBQ5_GLOUD)

HSP 1 Score: 73.6 bits (179), Expect = 6.250e-16
Identity = 34/60 (56.67%), Postives = 41/60 (68.33%), Query Frame = 1 
Query:    1 MGQRHGKAVYDSAAKPFLNLSLAAVGTLWETFNDVADGFGINRHEFTEICAELGEELQLN 180
            MGQ HGKA Y  AA PF+N S   V  LWETFNDVA+GFG+N+ E  EIC  L   L+++
Sbjct:    1 MGQLHGKATYLKAATPFVNASEKDVNKLWETFNDVAEGFGLNQDEMCEICRALQPTLEIH 60
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BLAST of mRNA_L-elsbetiae_contig7982.16953.1 vs. uniprot
Match: A0A5D6Y7G3_9STRA (EF-hand domain-containing protein (Fragment) n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y7G3_9STRA)

HSP 1 Score: 70.5 bits (171), Expect = 1.780e-14
Identity = 31/60 (51.67%), Postives = 43/60 (71.67%), Query Frame = 1 
Query:    1 MGQRHGKAVYDSAAKPFLNLSLAAVGTLWETFNDVADGFGINRHEFTEICAELGEELQLN 180
            MGQ+HGKA   +AA PF+N S   V  LWETFNDVA+GFG+++ E +E+C  L   L+++
Sbjct:    1 MGQKHGKAALVAAATPFVNASEKYVNKLWETFNDVAEGFGLSQDEASEVCRALQPALEIH 60
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BLAST of mRNA_L-elsbetiae_contig7982.16953.1 vs. uniprot
Match: A0A2D4CGP0_PYTIN (EF-hand domain-containing protein (Fragment) n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CGP0_PYTIN)

HSP 1 Score: 73.6 bits (179), Expect = 8.250e-14
Identity = 34/60 (56.67%), Postives = 42/60 (70.00%), Query Frame = 1 
Query:    1 MGQRHGKAVYDSAAKPFLNLSLAAVGTLWETFNDVADGFGINRHEFTEICAELGEELQLN 180
            MGQ HGKA Y  AA PFLN S   V  LWE+FNDVA+GFG+N+ E +EIC  L   L+++
Sbjct:    1 MGQCHGKATYIKAAAPFLNASEKDVNRLWESFNDVAEGFGLNQDELSEICRTLMPTLEIH 60
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BLAST of mRNA_L-elsbetiae_contig7982.16953.1 vs. uniprot
Match: A0A8K1C8I5_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C8I5_PYTOL)

HSP 1 Score: 73.6 bits (179), Expect = 8.290e-14
Identity = 34/60 (56.67%), Postives = 40/60 (66.67%), Query Frame = 1 
Query:    1 MGQRHGKAVYDSAAKPFLNLSLAAVGTLWETFNDVADGFGINRHEFTEICAELGEELQLN 180
            MGQ HGKA Y  AA PFLN S   V  LWE FNDVA+GFG+N+ E  EIC  L   L+++
Sbjct:    1 MGQLHGKAAYAQAATPFLNASEKDVNKLWEAFNDVAEGFGLNQDEMCEICRSLMPTLEIH 60
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BLAST of mRNA_L-elsbetiae_contig7982.16953.1 vs. uniprot
Match: A0A2D4BE44_PYTIN (EF-hand domain-containing protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BE44_PYTIN)

HSP 1 Score: 73.6 bits (179), Expect = 8.290e-14
Identity = 34/60 (56.67%), Postives = 42/60 (70.00%), Query Frame = 1 
Query:    1 MGQRHGKAVYDSAAKPFLNLSLAAVGTLWETFNDVADGFGINRHEFTEICAELGEELQLN 180
            MGQ HGKA Y  AA PFLN S   V  LWE+FNDVA+GFG+N+ E +EIC  L   L+++
Sbjct:    1 MGQCHGKATYIKAAAPFLNASEKDVNRLWESFNDVAEGFGLNQDELSEICRTLMPTLEIH 60
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BLAST of mRNA_L-elsbetiae_contig7982.16953.1 vs. uniprot
Match: A0A485LR91_9STRA (Aste57867_24752 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LR91_9STRA)

HSP 1 Score: 72.0 bits (175), Expect = 2.890e-13
Identity = 32/59 (54.24%), Postives = 42/59 (71.19%), Query Frame = 1 
Query:    1 MGQRHGKAVYDSAAKPFLNLSLAAVGTLWETFNDVADGFGINRHEFTEICAELGEELQL 177
            MGQ HGKA + +AA PFLN+S   V   WE+FNDVA+GFGINR E  +IC+ L +  ++
Sbjct:    1 MGQLHGKATFVNAALPFLNISEKDVNKCWESFNDVAEGFGINRAEMIDICSPLQDTFEI 59
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BLAST of mRNA_L-elsbetiae_contig7982.16953.1 vs. uniprot
Match: A0A6A4ZRG4_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A4ZRG4_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 3.030e-13
Identity = 31/59 (52.54%), Postives = 42/59 (71.19%), Query Frame = 1 
Query:    1 MGQRHGKAVYDSAAKPFLNLSLAAVGTLWETFNDVADGFGINRHEFTEICAELGEELQL 177
            MGQ HGKA + +AA PF+N+S   V   WE+FNDVA+GFGINR E  +IC+ L +  ++
Sbjct:    1 MGQLHGKATFANAALPFVNISEKDVNKCWESFNDVAEGFGINRVEMIDICSPLQDTFEI 59
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BLAST of mRNA_L-elsbetiae_contig7982.16953.1 vs. uniprot
Match: A0A024TA71_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TA71_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 3.890e-13
Identity = 32/59 (54.24%), Postives = 42/59 (71.19%), Query Frame = 1 
Query:    1 MGQRHGKAVYDSAAKPFLNLSLAAVGTLWETFNDVADGFGINRHEFTEICAELGEELQL 177
            MGQ HGKA + +AA PFLN+S   V   WE+FNDVA+GFGINR E  +IC+ L +  ++
Sbjct:    1 MGQLHGKASFATAALPFLNISEKDVNKCWESFNDVAEGFGINRIEMIDICSPLQDSFEI 59
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7982.16953.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L3H7_9PHAE5.040e-3395.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FR21_ECTSI1.020e-3095.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
K3XBQ5_GLOUD6.250e-1656.67Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A5D6Y7G3_9STRA1.780e-1451.67EF-hand domain-containing protein (Fragment) n=1 T... [more]
A0A2D4CGP0_PYTIN8.250e-1456.67EF-hand domain-containing protein (Fragment) n=1 T... [more]
A0A8K1C8I5_PYTOL8.290e-1456.67Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A2D4BE44_PYTIN8.290e-1456.67EF-hand domain-containing protein n=1 Tax=Pythium ... [more]
A0A485LR91_9STRA2.890e-1354.24Aste57867_24752 protein n=1 Tax=Aphanomyces stella... [more]
A0A6A4ZRG4_9STRA3.030e-1352.54Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
A0A024TA71_9STRA3.890e-1354.24Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7982contigL-elsbetiae_contig7982:5400..5579 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score120.9
Seed ortholog evalue2e-25
Seed eggNOG ortholog2880.D7FR21
KEGG koko:K18595,ko:K18598
Hectar predicted targeting categoryother localisation
EggNOG free text desc.microtubule binding
EggNOG OGsCOG2319@1,KOG2106@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04812
Exons1
Model size180
Cds size180
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816882.2682266-CDS-L-elsbetiae_contig7982:5399..55791622816882.2682266-CDS-L-elsbetiae_contig7982:5399..5579Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7982 5400..5579 +
1691683884.3961697-CDS-L-elsbetiae_contig7982:5399..55791691683884.3961697-CDS-L-elsbetiae_contig7982:5399..5579Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7982 5400..5579 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7982.16953.1prot_L-elsbetiae_contig7982.16953.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7982 5400..5579 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7982.16953.1

>prot_L-elsbetiae_contig7982.16953.1 ID=prot_L-elsbetiae_contig7982.16953.1|Name=mRNA_L-elsbetiae_contig7982.16953.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=60bp
MGQRHGKAVYDSAAKPFLNLSLAAVGTLWETFNDVADGFGINRHEFTEIC
AELGEELQLN
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mRNA from alignment at L-elsbetiae_contig7982:5400..5579+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7982.16953.1 ID=mRNA_L-elsbetiae_contig7982.16953.1|Name=mRNA_L-elsbetiae_contig7982.16953.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=180bp|location=Sequence derived from alignment at L-elsbetiae_contig7982:5400..5579+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGGGCAACGGCATGGCAAGGCGGTGTATGACAGCGCCGCAAAACCCTT
CCTCAACCTCAGCCTGGCGGCGGTGGGCACGCTGTGGGAGACCTTCAATG
ACGTCGCCGATGGTTTCGGCATCAATCGACACGAGTTTACCGAGATTTGC
GCCGAGCTCGGCGAGGAGCTACAGCTAAAT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7982:5400..5579+

>mRNA_L-elsbetiae_contig7982.16953.1 ID=mRNA_L-elsbetiae_contig7982.16953.1|Name=mRNA_L-elsbetiae_contig7982.16953.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=360bp|location=Sequence derived from alignment at L-elsbetiae_contig7982:5400..5579+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGGGCAACGGCATGGCAAGGCGGTGTATGACAGCGCCGCAAAACCCTT
CCTCAACCTCAGCCTGGCGGCGGTGGGCACGCTGTGGGAGACCTTCAATG
ACGTCGCCGATGGTTTCGGCATCAATCGACACGAGTTTACCGAGATTTGC
GCCGAGCTCGGCGAGGAGCTACAGCTAAATATGGGGCAACGGCATGGCAA
GGCGGTGTATGACAGCGCCGCAAAACCCTTCCTCAACCTCAGCCTGGCGG
CGGTGGGCACGCTGTGGGAGACCTTCAATGACGTCGCCGATGGTTTCGGC
ATCAATCGACACGAGTTTACCGAGATTTGCGCCGAGCTCGGCGAGGAGCT
ACAGCTAAAT
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