mRNA_L-elsbetiae_contig798.16950.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig798.16950.1
Unique NamemRNA_L-elsbetiae_contig798.16950.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig798.16950.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig798contigL-elsbetiae_contig798:6062..7193 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-13_002260.2
Exons1
Model size1132
Cds size582
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig798.16950.1prot_L-elsbetiae_contig798.16950.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig798 6427..7008 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816881.9162817-UTR-L-elsbetiae_contig798:6061..64261622816881.9162817-UTR-L-elsbetiae_contig798:6061..6426Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig798 6062..6426 +
1691683884.1048853-UTR-L-elsbetiae_contig798:6061..64261691683884.1048853-UTR-L-elsbetiae_contig798:6061..6426Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig798 6062..6426 +
1622816881.9458783-UTR-L-elsbetiae_contig798:7008..71931622816881.9458783-UTR-L-elsbetiae_contig798:7008..7193Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig798 7009..7193 +
1691683884.144548-UTR-L-elsbetiae_contig798:7008..71931691683884.144548-UTR-L-elsbetiae_contig798:7008..7193Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig798 7009..7193 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816881.933611-CDS-L-elsbetiae_contig798:6426..70081622816881.933611-CDS-L-elsbetiae_contig798:6426..7008Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig798 6427..7008 +
1691683884.1270552-CDS-L-elsbetiae_contig798:6426..70081691683884.1270552-CDS-L-elsbetiae_contig798:6426..7008Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig798 6427..7008 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig798.16950.1

>prot_L-elsbetiae_contig798.16950.1 ID=prot_L-elsbetiae_contig798.16950.1|Name=mRNA_L-elsbetiae_contig798.16950.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=194bp
MWPTSLQELTFGLCFDQPITGVVWPASLQRLWFGDVFNQSITGAIWPCVL
LELSFGDDFNQPIAEVVWPASLQQLSFGDDFDQPIAEVVWPASLQQLSFR
GDFNQSIARAAWPASLQQLSLGVYFNQPIAEVVWPASLQRLSFDDNFNQP
IAEVEWPASLHQLSFGRDFNQSIAGVVWPASMRRVTRQGVSLL*
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mRNA from alignment at L-elsbetiae_contig798:6062..7193+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig798.16950.1 ID=mRNA_L-elsbetiae_contig798.16950.1|Name=mRNA_L-elsbetiae_contig798.16950.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1132bp|location=Sequence derived from alignment at L-elsbetiae_contig798:6062..7193+ (Laminarionema elsbetiae ELsaHSoW15)
AGCACCCCTCAGCTTGTGGTCTCCTCAGGAATCACAGACCCAGCCGAGTT
CAGCAACCTCCGAGGAAGCCCGATCCCCGAGTCGCGTGGCGGTCGTTCGA
GCTCACCGTTTGAGGTGGGAGCTTCCAACAGAGGTTCTGATGCAGAGGGC
CCTGAACGAGTTGTGGAAATGGTCGCATTGTTTTGAGCTAGACAACAGCC
CCGACTGTTCCATCGCCGAAGTTGTATGGCCAGCATCTCTGCAGCATATT
TCTTTTCATTTCTTTAGGTTTCTACTTCAACCAGTCCATCGCCGGAGTTG
TGTGGCCGACCTCCCTGCAACAACTGATATTCGGGTTTCACTTCAATCAG
CCTATCGCCGGAGTTATGTGGCCGACCTCCTTGCAAGAACTGACGTTCGG
GCTTTGCTTCGACCAGCCCATCACCGGAGTTGTATGGCCGGCCTCCCTGC
AGCGGCTATGGTTCGGGGATGTGTTCAACCAGTCGATCACCGGAGCTATA
TGGCCGTGCGTACTTCTGGAGTTATCATTCGGGGATGACTTCAACCAGCC
CATTGCCGAAGTCGTGTGGCCGGCCTCCCTGCAGCAGCTATCATTCGGGG
ATGACTTCGATCAACCCATTGCCGAAGTCGTGTGGCCGGCCTCCCTGCAG
CAGCTATCGTTCAGAGGTGATTTCAACCAGTCCATCGCCAGAGCCGCGTG
GCCGGCCTCGCTGCAACAGCTGTCGTTGGGAGTATACTTCAACCAGCCCA
TTGCCGAAGTCGTGTGGCCGGCCTCTCTGCAGCGACTGTCGTTCGATGAT
AATTTCAACCAGCCCATTGCCGAAGTCGAGTGGCCGGCCTCTCTGCACCA
GCTATCGTTCGGGCGTGATTTCAACCAGTCCATCGCTGGAGTCGTGTGGC
CGGCGTCAATGCGACGTGTAACTCGTCAGGGCGTCAGCCTTCTCTAAGTG
GTTTGGGCATGCTAGCGGGCCTGCCGTTTGGGACACGTTAGCGAAGAGCA
CGGGGGGTTGCCTTTACTTACGGGTTGTGTTTCGTTCTGGGCTGATGCCC
CCAACAAGCATTTTCGCCTGCAGCGAATATGAAAATGCCGGGGGAAAAAT
ATATGTTGTTGCGGCCAAAACCTCCTTCCTGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig798:6062..7193+

>mRNA_L-elsbetiae_contig798.16950.1 ID=mRNA_L-elsbetiae_contig798.16950.1|Name=mRNA_L-elsbetiae_contig798.16950.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1164bp|location=Sequence derived from alignment at L-elsbetiae_contig798:6062..7193+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTGGCCGACCTCCTTGCAAGAACTGACGTTCGGGCTTTGCTTCGACCA
GCCCATCACCGGAGTTGTATGGCCGGCCTCCCTGCAGCGGCTATGGTTCG
GGGATGTGTTCAACCAGTCGATCACCGGAGCTATATGGCCGTGCGTACTT
CTGGAGTTATCATTCGGGGATGACTTCAACCAGCCCATTGCCGAAGTCGT
GTGGCCGGCCTCCCTGCAGCAGCTATCATTCGGGGATGACTTCGATCAAC
CCATTGCCGAAGTCGTGTGGCCGGCCTCCCTGCAGCAGCTATCGTTCAGA
GGTGATTTCAACCAGTCCATCGCCAGAGCCGCGTGGCCGGCCTCGCTGCA
ACAGCTGTCGTTGGGAGTATACTTCAACCAGCCCATTGCCGAAGTCGTGT
GGCCGGCCTCTCTGCAGCGACTGTCGTTCGATGATAATTTCAACCAGCCC
ATTGCCGAAGTCGAGTGGCCGGCCTCTCTGCACCAGCTATCGTTCGGGCG
TGATTTCAACCAGTCCATCGCTGGAGTCGTGTGGCCGGCGTCAATGCGAC
GTGTAACTCGTCAGGGCGTCAGCCTTCTCTAAATGTGGCCGACCTCCTTG
CAAGAACTGACGTTCGGGCTTTGCTTCGACCAGCCCATCACCGGAGTTGT
ATGGCCGGCCTCCCTGCAGCGGCTATGGTTCGGGGATGTGTTCAACCAGT
CGATCACCGGAGCTATATGGCCGTGCGTACTTCTGGAGTTATCATTCGGG
GATGACTTCAACCAGCCCATTGCCGAAGTCGTGTGGCCGGCCTCCCTGCA
GCAGCTATCATTCGGGGATGACTTCGATCAACCCATTGCCGAAGTCGTGT
GGCCGGCCTCCCTGCAGCAGCTATCGTTCAGAGGTGATTTCAACCAGTCC
ATCGCCAGAGCCGCGTGGCCGGCCTCGCTGCAACAGCTGTCGTTGGGAGT
ATACTTCAACCAGCCCATTGCCGAAGTCGTGTGGCCGGCCTCTCTGCAGC
GACTGTCGTTCGATGATAATTTCAACCAGCCCATTGCCGAAGTCGAGTGG
CCGGCCTCTCTGCACCAGCTATCGTTCGGGCGTGATTTCAACCAGTCCAT
CGCTGGAGTCGTGTGGCCGGCGTCAATGCGACGTGTAACTCGTCAGGGCG
TCAGCCTTCTCTAA
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