mRNA_L-elsbetiae_contig7977.16945.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7977.16945.1
Unique NamemRNA_L-elsbetiae_contig7977.16945.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig7977.16945.1 vs. uniprot
Match: D8LEY0_ECTSI (Transmembrane 9 superfamily member n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEY0_ECTSI)

HSP 1 Score: 146 bits (368), Expect = 1.040e-40
Identity = 68/89 (76.40%), Postives = 76/89 (85.39%), Query Frame = 1 
Query:    4 VEWVPTETPFKERFDYYKDPKFFEHTIHWFSIFNSGMMVIFLCGLVALILVRTLKNDFAKYTADDDDLEGPDAGLGDDSGWKQVTDQAF 270
            V WV T+ PF +RFD+Y DPKFF+H IHWFSI NS MMVIFLCGLVALILV+TLKNDFAKY+ DDDDLEGPDAG+G+DSGWKQV    F
Sbjct:  204 VAWVETDVPFDKRFDHYLDPKFFKHRIHWFSIINSFMMVIFLCGLVALILVKTLKNDFAKYSPDDDDLEGPDAGIGEDSGWKQVHGDVF 292
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BLAST of mRNA_L-elsbetiae_contig7977.16945.1 vs. uniprot
Match: A0A6H5KXN7_9PHAE (Transmembrane 9 superfamily member n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXN7_9PHAE)

HSP 1 Score: 143 bits (360), Expect = 4.180e-38
Identity = 66/90 (73.33%), Postives = 76/90 (84.44%), Query Frame = 1 
Query:    1 QVEWVPTETPFKERFDYYKDPKFFEHTIHWFSIFNSGMMVIFLCGLVALILVRTLKNDFAKYTADDDDLEGPDAGLGDDSGWKQVTDQAF 270
            +V WV ++ PF +RFD Y +PKFF+H IHWFSI NS MMV+FLCGLVALILV+TLKNDFAKYT DDDDLEGPDAG+G+DSGWKQV    F
Sbjct:  203 EVAWVESDVPFDKRFDSYLEPKFFKHRIHWFSIINSFMMVVFLCGLVALILVKTLKNDFAKYTPDDDDLEGPDAGVGEDSGWKQVHGDVF 292
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BLAST of mRNA_L-elsbetiae_contig7977.16945.1 vs. uniprot
Match: UPI000C1D6A0F (transmembrane 9 superfamily member 1-like n=1 Tax=Olea europaea var. sylvestris TaxID=158386 RepID=UPI000C1D6A0F)

HSP 1 Score: 113 bits (283), Expect = 6.910e-30
Identity = 53/89 (59.55%), Postives = 64/89 (71.91%), Query Frame = 1 
Query:    4 VEWVPTETPFKERFDYYKDPKFFEHTIHWFSIFNSGMMVIFLCGLVALILVRTLKNDFAKYTADDDDLEGPDAGLGDDSGWKQVTDQAF 270
            V+W+PT   F  RFD Y D  FFEH IHWFSIFNS MMVIFL GL ++IL+RTL+ND+AKY  DDDDLE  +  + D+ GWK V +  F
Sbjct:   50 VKWIPTNVSFARRFDVYLDHPFFEHRIHWFSIFNSFMMVIFLTGLASMILMRTLRNDYAKYARDDDDLEALERDVSDEFGWKLVHEDVF 138
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BLAST of mRNA_L-elsbetiae_contig7977.16945.1 vs. uniprot
Match: A0A7S4DBZ3_HETAK (Transmembrane 9 superfamily member n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DBZ3_HETAK)

HSP 1 Score: 118 bits (296), Expect = 1.200e-29
Identity = 59/89 (66.29%), Postives = 67/89 (75.28%), Query Frame = 1 
Query:    4 VEWVPTETPFKERFDYYKDPKFFEHTIHWFSIFNSGMMVIFLCGLVALILVRTLKNDFAKYTADDDDLEGPDAGLGDDSGWKQVTDQAF 270
            V W PT+ PF  RFD Y D  FFEH IHWFSIFNS MMVIFLCGLV LIL+RTLKNDFAKY + D ++E  D+ +G+DSGWKQV    F
Sbjct:   44 VHWSPTDQPFHSRFDRYLDNDFFEHQIHWFSIFNSFMMVIFLCGLVFLILMRTLKNDFAKYASMDGEMETGDS-MGEDSGWKQVHGDVF 131
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BLAST of mRNA_L-elsbetiae_contig7977.16945.1 vs. uniprot
Match: A0A7J8MBZ4_9ROSI (Transmembrane 9 superfamily member n=1 Tax=Gossypium lobatum TaxID=34289 RepID=A0A7J8MBZ4_9ROSI)

HSP 1 Score: 110 bits (275), Expect = 2.900e-29
Identity = 51/89 (57.30%), Postives = 65/89 (73.03%), Query Frame = 1 
Query:    4 VEWVPTETPFKERFDYYKDPKFFEHTIHWFSIFNSGMMVIFLCGLVALILVRTLKNDFAKYTADDDDLEGPDAGLGDDSGWKQVTDQAF 270
            ++W+PT   F  RFD Y D  FFEH IHWFS+FNS MMVIFL GLV++IL+RTL+ND+AKY  +DDDLE  +  + ++SGWK V    F
Sbjct:    5 IKWLPTNVTFARRFDVYLDYPFFEHQIHWFSVFNSFMMVIFLTGLVSMILMRTLRNDYAKYAREDDDLETLERDVSEESGWKLVHGDVF 93
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BLAST of mRNA_L-elsbetiae_contig7977.16945.1 vs. uniprot
Match: A0A803M355_CHEQI (Transmembrane 9 superfamily member n=1 Tax=Chenopodium quinoa TaxID=63459 RepID=A0A803M355_CHEQI)

HSP 1 Score: 113 bits (282), Expect = 1.290e-28
Identity = 53/89 (59.55%), Postives = 66/89 (74.16%), Query Frame = 1 
Query:    4 VEWVPTETPFKERFDYYKDPKFFEHTIHWFSIFNSGMMVIFLCGLVALILVRTLKNDFAKYTADDDDLEGPDAGLGDDSGWKQVTDQAF 270
            V+W+PT+  F  RFD Y D  FFEH IHWFSIFNS MMVIFL GLV++IL+RTL+ND+AKY  +DDDLE  +  + ++SGWK V    F
Sbjct:    5 VKWIPTDVTFGRRFDIYLDYPFFEHQIHWFSIFNSFMMVIFLTGLVSMILMRTLRNDYAKYAREDDDLESLERDVSEESGWKLVHGDVF 93
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BLAST of mRNA_L-elsbetiae_contig7977.16945.1 vs. uniprot
Match: A0A1D6IU74_MAIZE (Transmembrane 9 superfamily member n=1 Tax=Zea mays TaxID=4577 RepID=A0A1D6IU74_MAIZE)

HSP 1 Score: 109 bits (272), Expect = 1.370e-28
Identity = 52/89 (58.43%), Postives = 65/89 (73.03%), Query Frame = 1 
Query:    4 VEWVPTETPFKERFDYYKDPKFFEHTIHWFSIFNSGMMVIFLCGLVALILVRTLKNDFAKYTADDDDLEGPDAGLGDDSGWKQVTDQAF 270
            V+WV T+  F  RF+ Y D  FFEH IHWFSIFNS MMVIFL GLV++IL+RTL+ND+AKY  +DDDLE  +  + ++SGWK V    F
Sbjct:    5 VKWVATDVSFARRFEVYLDYPFFEHQIHWFSIFNSFMMVIFLTGLVSMILMRTLRNDYAKYAREDDDLESLERDVNEESGWKLVHGDVF 93
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BLAST of mRNA_L-elsbetiae_contig7977.16945.1 vs. uniprot
Match: A0A0H5R8L6_9EUKA (Transmembrane 9 superfamily member n=1 Tax=Spongospora subterranea TaxID=70186 RepID=A0A0H5R8L6_9EUKA)

HSP 1 Score: 116 bits (291), Expect = 1.510e-28
Identity = 56/92 (60.87%), Postives = 71/92 (77.17%), Query Frame = 1 
Query:    1 QVEWVPTETPFKERFDYYKDPKFFEHTIHWFSIFNSGMMVIFLCGLVALILVRTLKNDFAKYTADDD--DLEGPDAGLGDDSGWKQVTDQAF 270
            +V W PT+  F++RFDYY D  FFEH IHWFSIFNS MMV+FLCGLVAL+L+RTL+ND+A+Y+ DDD  DL+     +G++SGWKQV    F
Sbjct:  183 EVVWSPTDKQFEDRFDYYLDVAFFEHQIHWFSIFNSFMMVLFLCGLVALVLMRTLRNDYARYSLDDDGFDLDN----IGEESGWKQVHGDVF 270
[Close]
BLAST of mRNA_L-elsbetiae_contig7977.16945.1 vs. uniprot
Match: A0A1R3K3E1_9ROSI (Transmembrane 9 superfamily member n=3 Tax=Malvaceae TaxID=3629 RepID=A0A1R3K3E1_9ROSI)

HSP 1 Score: 111 bits (277), Expect = 2.220e-28
Identity = 51/89 (57.30%), Postives = 65/89 (73.03%), Query Frame = 1 
Query:    4 VEWVPTETPFKERFDYYKDPKFFEHTIHWFSIFNSGMMVIFLCGLVALILVRTLKNDFAKYTADDDDLEGPDAGLGDDSGWKQVTDQAF 270
            ++W+PT   F  RFD Y D  FFEH IHWFS+FNS MMVIFL GLV++IL+RTL+ND+AKY  +DDDLE  +  + ++SGWK V    F
Sbjct:  108 IKWIPTNVTFARRFDVYLDYPFFEHQIHWFSVFNSFMMVIFLTGLVSMILMRTLRNDYAKYAREDDDLETLERDVSEESGWKLVHGDVF 196
[Close]
BLAST of mRNA_L-elsbetiae_contig7977.16945.1 vs. uniprot
Match: A0A1D6HAD5_MAIZE (Transmembrane 9 superfamily member n=1 Tax=Zea mays TaxID=4577 RepID=A0A1D6HAD5_MAIZE)

HSP 1 Score: 110 bits (275), Expect = 2.640e-28
Identity = 53/89 (59.55%), Postives = 64/89 (71.91%), Query Frame = 1 
Query:    4 VEWVPTETPFKERFDYYKDPKFFEHTIHWFSIFNSGMMVIFLCGLVALILVRTLKNDFAKYTADDDDLEGPDAGLGDDSGWKQVTDQAF 270
            V+W PT   F  RFD Y D  FFEH IHWFSIFNS MMVIFL GLV++IL+RTL+ND+AKY  DDDD+E  +  + ++SGWK V    F
Sbjct:   88 VKWEPTNITFAHRFDVYLDYPFFEHQIHWFSIFNSFMMVIFLTGLVSMILMRTLRNDYAKYARDDDDIETLERDVNEESGWKLVHGDVF 176
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7977.16945.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LEY0_ECTSI1.040e-4076.40Transmembrane 9 superfamily member n=1 Tax=Ectocar... [more]
A0A6H5KXN7_9PHAE4.180e-3873.33Transmembrane 9 superfamily member n=1 Tax=Ectocar... [more]
UPI000C1D6A0F6.910e-3059.55transmembrane 9 superfamily member 1-like n=1 Tax=... [more]
A0A7S4DBZ3_HETAK1.200e-2966.29Transmembrane 9 superfamily member n=1 Tax=Heteros... [more]
A0A7J8MBZ4_9ROSI2.900e-2957.30Transmembrane 9 superfamily member n=1 Tax=Gossypi... [more]
A0A803M355_CHEQI1.290e-2859.55Transmembrane 9 superfamily member n=1 Tax=Chenopo... [more]
A0A1D6IU74_MAIZE1.370e-2858.43Transmembrane 9 superfamily member n=1 Tax=Zea may... [more]
A0A0H5R8L6_9EUKA1.510e-2860.87Transmembrane 9 superfamily member n=1 Tax=Spongos... [more]
A0A1R3K3E1_9ROSI2.220e-2857.30Transmembrane 9 superfamily member n=3 Tax=Malvace... [more]
A0A1D6HAD5_MAIZE2.640e-2859.55Transmembrane 9 superfamily member n=1 Tax=Zea may... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7977contigL-elsbetiae_contig7977:329..1154 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score147.5
Seed ortholog evalue3e-33
Seed eggNOG ortholog2880.D8LEY0
Preferred nameTM9SF3
KEGG koko:K02639,ko:K17087
KEGG Pathwayko00195,map00195
Hectar predicted targeting categorysignal anchor
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005794,GO:0005795,GO:0005797,GO:0005801,GO:0005802,GO:0012505,GO:0016020,GO:0016021,GO:0031224,GO:0031410,GO:0031982,GO:0031984,GO:0031985,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0097708,GO:0098791
EggNOG free text desc.secretion of lysosomal enzymes
EggNOG OGsKOG1277@2759,KOG1278@1
Ec32 ortholog descriptionNonaspanin (TM9SF)
Ec32 orthologEc-21_005980.1
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00194,ko04147
Exons2
Model size270
Cds size270
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816881.8037791-CDS-L-elsbetiae_contig7977:328..5111622816881.8037791-CDS-L-elsbetiae_contig7977:328..511Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7977 329..511 +
1691683884.0405686-CDS-L-elsbetiae_contig7977:328..5111691683884.0405686-CDS-L-elsbetiae_contig7977:328..511Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7977 329..511 +
1622816881.8160028-CDS-L-elsbetiae_contig7977:1067..11541622816881.8160028-CDS-L-elsbetiae_contig7977:1067..1154Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7977 1068..1154 +
1691683884.054175-CDS-L-elsbetiae_contig7977:1067..11541691683884.054175-CDS-L-elsbetiae_contig7977:1067..1154Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7977 1068..1154 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7977.16945.1prot_L-elsbetiae_contig7977.16945.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7977 329..1154 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7977.16945.1

>prot_L-elsbetiae_contig7977.16945.1 ID=prot_L-elsbetiae_contig7977.16945.1|Name=mRNA_L-elsbetiae_contig7977.16945.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=90bp
QVEWVPTETPFKERFDYYKDPKFFEHTIHWFSIFNSGMMVIFLCGLVALI
LVRTLKNDFAKYTADDDDLEGPDAGLGDDSGWKQVTDQAF
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mRNA from alignment at L-elsbetiae_contig7977:329..1154+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7977.16945.1 ID=mRNA_L-elsbetiae_contig7977.16945.1|Name=mRNA_L-elsbetiae_contig7977.16945.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=826bp|location=Sequence derived from alignment at L-elsbetiae_contig7977:329..1154+ (Laminarionema elsbetiae ELsaHSoW15)
CAGGTGGAGTGGGTGCCCACGGAGACGCCGTTCAAGGAGCGGTTCGACTA
CTACAAGGACCCCAAGTTCTTCGAGCACACGATCCACTGGTTCTCCATCT
TCAACTCCGGCATGATGGTCATCTTCCTCTGCGGCCTGGTGGCCCTGATC
CTGGTCCGCACGCTCAAGAACGACTTTGCCAAGGTGAGCGTTAAGCTTGA
TCGGGACAAGTCAGTCCCGGGCGGAGAGGGGCTAGGAAGGCGGCTACGTG
AGGTGTTTGTACGCCGTTGATGGTGGAAGTGTCGAACAGAAGAGTAAAAT
GATTTTTTGATTTTTTAGATATGTGTACACAGATGCGAGACGATATCGGC
TTTCCGTTGGTGGAGATATTTCGAGGGACCATATATTTAGCTCTTTAAAA
TGTGTCGCTTTGTAGGTAGTATGTACTTTTGAAGAAAACAGAAAAAAACA
CGGAGCCCCGAAGGAAGAAAGGAAGGAAGGAAGGGAGGGAGGCCCGTGTT
TGTGAGGGAGGCCTGAGTTTGTGTTGTGTTGTCTTGATTTGATTTGCGTA
GCGCTGCCAGGCTCTCTTGCTGCCGCTCGCCCCGACCGGATCGTTTTTTG
AGCTCCTCTTTCTTCTCCTGCTGCTGCTGCTGCTGCCGTCGTCCGCTCCG
CTCGTTTGCGTTTTTGCTTGCTCTTGTTGTTGTTGCTGCTGTTGTTTTGT
TTGGTTGGTTCGTGCGTTGTGTGCTGTTGGTGGGTGTAGTACACGGCGGA
CGATGACGACCTGGAAGGGCCGGACGCGGGGCTCGGGGACGACAGCGGCT
GGAAGCAGGTGACTGATCAGGCGTTT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7977:329..1154+

>mRNA_L-elsbetiae_contig7977.16945.1 ID=mRNA_L-elsbetiae_contig7977.16945.1|Name=mRNA_L-elsbetiae_contig7977.16945.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=540bp|location=Sequence derived from alignment at L-elsbetiae_contig7977:329..1154+ (Laminarionema elsbetiae ELsaHSoW15)
CAGGTGGAGTGGGTGCCCACGGAGACGCCGTTCAAGGAGCGGTTCGACTA
CTACAAGGACCCCAAGTTCTTCGAGCACACGATCCACTGGTTCTCCATCT
TCAACTCCGGCATGATGGTCATCTTCCTCTGCGGCCTGGTGGCCCTGATC
CTGGTCCGCACGCTCAAGAACGACTTTGCCAAGCAGGTGGAGTGGGTGCC
CACGGAGACGCCGTTCAAGGAGCGGTTCGACTACTACAAGGACCCCAAGT
TCTTCGAGCACACGATCCACTGGTTCTCCATCTTCAACTCCGGCATGATG
GTCATCTTCCTCTGCGGCCTGGTGGCCCTGATCCTGGTCCGCACGCTCAA
GAACGACTTTGCCAAGTACACGGCGGACGATGACGACCTGGAAGGGCCGG
ACGCGGGGCTCGGGGACGACAGCGGCTGGAAGCAGGTGACTGATCAGGCG
TTTTACACGGCGGACGATGACGACCTGGAAGGGCCGGACGCGGGGCTCGG
GGACGACAGCGGCTGGAAGCAGGTGACTGATCAGGCGTTT
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