mRNA_L-elsbetiae_contig797.16941.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig797.16941.1
Unique NamemRNA_L-elsbetiae_contig797.16941.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig797.16941.1 vs. uniprot
Match: A0A6H5L9P4_9PHAE (MI domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L9P4_9PHAE)

HSP 1 Score: 112 bits (280), Expect = 8.350e-27
Identity = 49/58 (84.48%), Postives = 54/58 (93.10%), Query Frame = 1 
Query:  118 RYEIAFLLKLRPKPESTPKPEGLNPPSRVDILWDGKEPAPLKAGSMRAGGIRPLPPLG 291
            RY+IAFL+ LRPKPE+TP+PEGLNPP RVDILWDGKEP P+KAGSMR GGIRPLPPLG
Sbjct:  108 RYDIAFLVSLRPKPEATPRPEGLNPPDRVDILWDGKEPTPIKAGSMRGGGIRPLPPLG 165
[Close]
BLAST of mRNA_L-elsbetiae_contig797.16941.1 vs. uniprot
Match: D8LKQ5_ECTSI (Eukaryotic initiation factor 4G n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKQ5_ECTSI)

HSP 1 Score: 112 bits (279), Expect = 1.140e-26
Identity = 49/58 (84.48%), Postives = 53/58 (91.38%), Query Frame = 1 
Query:  118 RYEIAFLLKLRPKPESTPKPEGLNPPSRVDILWDGKEPAPLKAGSMRAGGIRPLPPLG 291
            RY+IAFL+ LRPKPE TP+PEGLNPP RVDILWDGKEP P+KAGSMR GGIRPLPPLG
Sbjct:  141 RYDIAFLVSLRPKPEGTPRPEGLNPPDRVDILWDGKEPTPMKAGSMRGGGIRPLPPLG 198
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig797.16941.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L9P4_9PHAE8.350e-2784.48MI domain-containing protein n=1 Tax=Ectocarpus sp... [more]
D8LKQ5_ECTSI1.140e-2684.48Eukaryotic initiation factor 4G n=1 Tax=Ectocarpus... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig797contigL-elsbetiae_contig797:27157..28984 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score112.1
Seed ortholog evalue1.5e-22
Seed eggNOG ortholog2880.D8LKQ5
KEGG koko:K03260
KEGG Pathwayko03013,ko05416,map03013,map05416
KEGG ModuleM00428
Hectar predicted targeting categoryother localisation
GOsGO:0000932,GO:0002181,GO:0002183,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003743,GO:0005198,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005739,GO:0006412,GO:0006413,GO:0006518,GO:0006807,GO:0006996,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0010494,GO:0016043,GO:0016281,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0031369,GO:0032991,GO:0034063,GO:0034622,GO:0034641,GO:0034645,GO:0035770,GO:0036464,GO:0042254,GO:0042273,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904
EggNOG free text desc.translation initiation factor activity
EggNOG OGsKOG0401@1,KOG0401@2759
Ec32 ortholog descriptioneukaryotic initiation factor 4G
Ec32 orthologEc-07_004420.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03012,ko03019
Exons3
Model size295
Cds size291
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig797.16941.1prot_L-elsbetiae_contig797.16941.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig797 27157..28982 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816881.3669095-CDS-L-elsbetiae_contig797:27156..272641622816881.3669095-CDS-L-elsbetiae_contig797:27156..27264Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig797 27157..27264 +
1691683883.7642555-CDS-L-elsbetiae_contig797:27156..272641691683883.7642555-CDS-L-elsbetiae_contig797:27156..27264Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig797 27157..27264 +
1622816881.3789496-CDS-L-elsbetiae_contig797:27883..280001622816881.3789496-CDS-L-elsbetiae_contig797:27883..28000Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig797 27884..28000 +
1691683883.7784526-CDS-L-elsbetiae_contig797:27883..280001691683883.7784526-CDS-L-elsbetiae_contig797:27883..28000Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig797 27884..28000 +
1622816881.3910089-CDS-L-elsbetiae_contig797:28916..289821622816881.3910089-CDS-L-elsbetiae_contig797:28916..28982Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig797 28917..28982 +
1691683883.7884693-CDS-L-elsbetiae_contig797:28916..289821691683883.7884693-CDS-L-elsbetiae_contig797:28916..28982Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig797 28917..28982 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig797.16941.1

>prot_L-elsbetiae_contig797.16941.1 ID=prot_L-elsbetiae_contig797.16941.1|Name=mRNA_L-elsbetiae_contig797.16941.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=97bp
GSSAAAEACNKGAQEAEAEAAGSSGAPGDGDAGGEKSGPRYEIAFLLKLR
PKPESTPKPEGLNPPSRVDILWDGKEPAPLKAGSMRAGGIRPLPPLG
back to top

mRNA from alignment at L-elsbetiae_contig797:27157..28984+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig797.16941.1 ID=mRNA_L-elsbetiae_contig797.16941.1|Name=mRNA_L-elsbetiae_contig797.16941.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1828bp|location=Sequence derived from alignment at L-elsbetiae_contig797:27157..28984+ (Laminarionema elsbetiae ELsaHSoW15)
GGATCGTCTGCTGCCGCTGAGGCTTGCAACAAGGGGGCACAAGAGGCTGA
AGCGGAGGCTGCTGGCAGCAGCGGCGCCCCGGGAGACGGCGACGCCGGCG
GCGAGAAGGCGAGTGCAAAGTGTGTTGGTGTTGCTCAAGCTGCTGCGAGC
GTTGAGTGCTGGAATCAGACAGCGCGTGATTCACTCACACACAGGGATTC
GTGTACGGTGGTGGCGTGGCGTAACGTTCAGACCCGACAGATTGGTGAAT
CCAGGCGCACCGGCAGTTATGTGGCAAGCCAGACGGACGGATGGTGGGCG
AAACCATATCCGTCTTGCTACACAAACTGGCAAGAGTTCGTGATTTTTGC
CTCAGTATTAATGGAAAATTGAAAATTACAAGATGAAACACACGCAGGTG
GCTCTCGGAATGCAAAACATGCCCCACCCTGAACACCTCGAAATCCGTTT
TGCCTCGCGAAACTTGGGTGTAAAGCTTAGCCTACGCGTGACCGAACCAC
TTACATAAATGGGATACAGAACCATGCAGCACATGTATCTGTACTACAAG
CGAAGTATATCCCTTTCTCTCTCCCCTCTGCAAAGCAGCGACTTCCGGCC
GACGCCAAGTGCAAGCGGTTTATATGATCTAGACCCGTATCTCATTTGCA
GTATTTTACCCTCGCCGTTGGTGCTGTGTTGCTTGTCGCTTCGCTGCCTC
GCTACTTCACTGCCTCCTTGCGTTCAGAGCGGCCCTCGATACGAGATCGC
GTTCCTCCTCAAACTCAGGCCCAAGCCTGAGAGCACTCCGAAGCCAGAGG
GGCTTAACCCTCCCAGCCGGGTGGACATCCTGTGGGACGGAAAGGTGGGA
ACTTGCCTGGTTTTATTGACATAGTTAGGTAGCAGCCGGATAACGCGGTG
TGTTGATGTCGTTATTTTGTCTTGCTTGGAATTGGTATGTAGTATCCCCG
TCTCTTGGCATGTATGTGGATCGGCCACCCCGTCCCGTGTGGCGGAAAGA
AAAGGAGAGCGAAAAAGGCGGGTGAACATACACGGTATGCGTGCAACACA
CCGCTTTGTGTGCCTGGCTCGGGCAGCTTGCGCACTGCTCGCTGTACACG
GGTCATGGGAGCAGATGTACACCCGCCCTTCCGCTCCGGGTGGGAAGCGT
GAAGGAACGGCACAGTACGGCACGGCGCGGCACACGAGCACGTGCGCTGT
TTTCATTCATCCTGTGTGTAGTGCCGTGTAGTGTTTTGTTTTGGACGGAT
TGGTTGGGCTGGGCGCCTTTCGGGATGGGATGGAAATGTGACAGGAAGAA
AGCAGGTACCTTTTGTGTCGTATCGTATACACCCACAACCCTTTATGAAT
CGAAAACAGCGGGGCGTATGTACGTGTCGGGTGTATCGGCATCGGTATTC
AGCGGTGGAAAGCAAATCGATAGTATCGAAGCTGTGCACTTGCGTACATG
TATGTATCTCAGCGCTCGTTTCACCTGCTCGAAAAACAACTGACACACGA
AAAATGCAACGAGACATGTGGGGTACCCGGTGACACAGCAGGCACGAGGA
GCCAAAGTGCGTACCCTGGTACTGCTGTGCCGGCGAAATCGAAATTCGCA
CTCATCGTCATTCGAACCCTGCGTGCGATCTTGATTATTTTCTTTCTCTT
GCCTCCACTCGATCGTCTCATCAATCGGTCGATCTCGATCTCGGCATCCA
TTAACCCAATGTTGATGTTCATGCTGTTGGTGGTGGTGGTGGTGACGTCG
CTGATGACAGGAGCCGGCGCCGTTGAAGGCCGGGTCGATGCGCGCGGGAG
GGATCCGGCCCCTGCCGCCGCTCGGGGG
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig797:27157..28984+

>mRNA_L-elsbetiae_contig797.16941.1 ID=mRNA_L-elsbetiae_contig797.16941.1|Name=mRNA_L-elsbetiae_contig797.16941.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=582bp|location=Sequence derived from alignment at L-elsbetiae_contig797:27157..28984+ (Laminarionema elsbetiae ELsaHSoW15)
GGATCGTCTGCTGCCGCTGAGGCTTGCAACAAGGGGGCACAAGAGGCTGA
AGCGGAGGCTGCTGGCAGCAGCGGCGCCCCGGGAGACGGCGACGCCGGCG
GCGAGAAGGGATCGTCTGCTGCCGCTGAGGCTTGCAACAAGGGGGCACAA
GAGGCTGAAGCGGAGGCTGCTGGCAGCAGCGGCGCCCCGGGAGACGGCGA
CGCCGGCGGCGAGAAGAGCGGCCCTCGATACGAGATCGCGTTCCTCCTCA
AACTCAGGCCCAAGCCTGAGAGCACTCCGAAGCCAGAGGGGCTTAACCCT
CCCAGCCGGGTGGACATCCTGTGGGACGGAAAGAGCGGCCCTCGATACGA
GATCGCGTTCCTCCTCAAACTCAGGCCCAAGCCTGAGAGCACTCCGAAGC
CAGAGGGGCTTAACCCTCCCAGCCGGGTGGACATCCTGTGGGACGGAAAG
GAGCCGGCGCCGTTGAAGGCCGGGTCGATGCGCGCGGGAGGGATCCGGCC
CCTGCCGCCGCTCGGGGAGCCGGCGCCGTTGAAGGCCGGGTCGATGCGCG
CGGGAGGGATCCGGCCCCTGCCGCCGCTCGGG
back to top