mRNA_L-elsbetiae_contig7964.16931.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7964.16931.1
Unique NamemRNA_L-elsbetiae_contig7964.16931.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7964.16931.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7964contigL-elsbetiae_contig7964:2298..3172 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size297
Cds size294
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816880.611218-CDS-L-elsbetiae_contig7964:2297..25491622816880.611218-CDS-L-elsbetiae_contig7964:2297..2549Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7964 2298..2549 +
1691683883.2959054-CDS-L-elsbetiae_contig7964:2297..25491691683883.2959054-CDS-L-elsbetiae_contig7964:2297..2549Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7964 2298..2549 +
1622816880.6214182-CDS-L-elsbetiae_contig7964:3129..31711622816880.6214182-CDS-L-elsbetiae_contig7964:3129..3171Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7964 3130..3171 +
1691683883.304886-CDS-L-elsbetiae_contig7964:3129..31711691683883.304886-CDS-L-elsbetiae_contig7964:3129..3171Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7964 3130..3171 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7964.16931.1prot_L-elsbetiae_contig7964.16931.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7964 2298..3171 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7964.16931.1

>prot_L-elsbetiae_contig7964.16931.1 ID=prot_L-elsbetiae_contig7964.16931.1|Name=mRNA_L-elsbetiae_contig7964.16931.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=98bp
RVRQHRRGVFFGFTVHSDGCFFPGQDLEEDASRRNQRCSFGSDPGQGRSC
SGTRIRREPILAARGCGKAEAAASGEIGGVRDLEVLQAVVTQGPHFLS
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mRNA from alignment at L-elsbetiae_contig7964:2298..3172+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7964.16931.1 ID=mRNA_L-elsbetiae_contig7964.16931.1|Name=mRNA_L-elsbetiae_contig7964.16931.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=875bp|location=Sequence derived from alignment at L-elsbetiae_contig7964:2298..3172+ (Laminarionema elsbetiae ELsaHSoW15)
CGGGTGCGCCAACACCGTAGAGGGGTTTTCTTCGGCTTTACCGTCCATTC
CGACGGGTGCTTCTTTCCGGGGCAAGATCTCGAGGAGGATGCGAGCCGGA
GAAACCAGCGCTGTTCCTTTGGATCCGATCCCGGTCAAGGTCGAAGCTGC
TCGGGAACCCGAATCAGGAGGGAGCCTATCCTCGCAGCCAGAGGCTGTGG
CAAGGCGGAAGCGGCCGCGTCGGGGGAGATAGGGGGCGTGCGAGACCTAG
AGGTGTGTCCGGTACCGTTAGCGTGTAGGTAGGGTTTAATCGGAGTTCTT
TTGCTGGGTATGCTGTAGTTACAGATAAGAATAGGCGCACCCTTCGTTTT
ATACACAAGAAATTTACCCCGCAGGCCTCACGCAAGCTGCGCGCAACCCT
CTAGCTGAAGCGGATGGTATACGTGGTCTACCGTGCGGGTTGGAGAGAAC
GCTCAAGGGTGTGGTTGTTTTCGCCATAGTTTGTTTCGGCCTTTATTCGC
GCACTTCGGCACCAACTTGCCTTTCCCCGTGCGAGCCAGCGCAAGTGGTG
CAAATGGAATCGCTTCGTTCTTGTTTGGCGTCTTTGAGCTATTGCCCACC
TCCTGGAAGACTGGCCCGGTGCGTTCTCTTCGACTTTGACGATAGTTTTC
GTAGCCTAACGTATCGCACTCTTGTCGATTCCGAACAAAACTAGTTGCTT
GGATTTTCCATGGAGAATCCACTCTTCCCGGCAGGTACTCCGAAACAGAA
ATAATGTCGGACTGTCCCCACCCGCGCTGACTAAAACTCCCCGCCTAACT
CCTCGGCCGCTCTCTATTGCTGCTGGCGGCAGGTGCTTCAGGCAGTAGTT
ACGCAGGGCCCTCACTTTCTATCGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7964:2298..3172+

>mRNA_L-elsbetiae_contig7964.16931.1 ID=mRNA_L-elsbetiae_contig7964.16931.1|Name=mRNA_L-elsbetiae_contig7964.16931.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=588bp|location=Sequence derived from alignment at L-elsbetiae_contig7964:2298..3172+ (Laminarionema elsbetiae ELsaHSoW15)
CGGGTGCGCCAACACCGTAGAGGGGTTTTCTTCGGCTTTACCGTCCATTC
CGACGGGTGCTTCTTTCCGGGGCAAGATCTCGAGGAGGATGCGAGCCGGA
GAAACCAGCGCTGTTCCTTTGGATCCGATCCCGGTCAAGGTCGAAGCTGC
TCGGGAACCCGAATCAGGAGGGAGCCTATCCTCGCAGCCAGAGGCTGTGG
CAAGGCGGAAGCGGCCGCGTCGGGGGAGATAGGGGGCGTGCGAGACCTAG
AGCGGGTGCGCCAACACCGTAGAGGGGTTTTCTTCGGCTTTACCGTCCAT
TCCGACGGGTGCTTCTTTCCGGGGCAAGATCTCGAGGAGGATGCGAGCCG
GAGAAACCAGCGCTGTTCCTTTGGATCCGATCCCGGTCAAGGTCGAAGCT
GCTCGGGAACCCGAATCAGGAGGGAGCCTATCCTCGCAGCCAGAGGCTGT
GGCAAGGCGGAAGCGGCCGCGTCGGGGGAGATAGGGGGCGTGCGAGACCT
AGAGGTGCTTCAGGCAGTAGTTACGCAGGGCCCTCACTTTCTATCGGTGC
TTCAGGCAGTAGTTACGCAGGGCCCTCACTTTCTATCG
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