mRNA_L-elsbetiae_contig7962.16929.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7962.16929.1
Unique NamemRNA_L-elsbetiae_contig7962.16929.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7962.16929.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7962contigL-elsbetiae_contig7962:2948..3545 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size598
Cds size327
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816880.5383804-CDS-L-elsbetiae_contig7962:2947..32741622816880.5383804-CDS-L-elsbetiae_contig7962:2947..3274Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7962 2948..3274 +
1691683883.2672186-CDS-L-elsbetiae_contig7962:2947..32741691683883.2672186-CDS-L-elsbetiae_contig7962:2947..3274Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7962 2948..3274 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816880.550646-UTR-L-elsbetiae_contig7962:3274..35451622816880.550646-UTR-L-elsbetiae_contig7962:3274..3545Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7962 3275..3545 +
1691683883.2765143-UTR-L-elsbetiae_contig7962:3274..35451691683883.2765143-UTR-L-elsbetiae_contig7962:3274..3545Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7962 3275..3545 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7962.16929.1prot_L-elsbetiae_contig7962.16929.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7962 2948..3274 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7962.16929.1

>prot_L-elsbetiae_contig7962.16929.1 ID=prot_L-elsbetiae_contig7962.16929.1|Name=mRNA_L-elsbetiae_contig7962.16929.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=109bp
WRRNIAYQGVQWVCWHERTGRPNSVSVLSGGRHPNIEEDVGGIAAFICPK
PAYCCLGICPGGLEKPHVESPETRKKPAPESLHRHRWHSPFTLIHFSDGR
NSSVYLDV*
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mRNA from alignment at L-elsbetiae_contig7962:2948..3545+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7962.16929.1 ID=mRNA_L-elsbetiae_contig7962.16929.1|Name=mRNA_L-elsbetiae_contig7962.16929.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=598bp|location=Sequence derived from alignment at L-elsbetiae_contig7962:2948..3545+ (Laminarionema elsbetiae ELsaHSoW15)
TGGAGAAGAAATATCGCATACCAAGGCGTTCAGTGGGTATGTTGGCACGA
GCGGACAGGACGGCCGAACTCTGTGTCGGTGTTGAGTGGAGGACGTCATC
CGAATATAGAAGAGGATGTCGGCGGAATTGCAGCATTTATTTGCCCGAAG
CCTGCATACTGCTGTCTCGGCATCTGCCCGGGGGGACTTGAAAAGCCCCA
CGTCGAAAGTCCCGAGACTCGGAAAAAACCCGCGCCTGAAAGTCTACATC
GTCACCGCTGGCATTCGCCCTTTACTCTCATCCATTTCAGTGATGGCAGA
AACAGTAGTGTGTACTTAGATGTCTGAGGTAAGTAAGAAAACTACGTTCG
GAACATTGGCTGCTTTGCGTCCTGATCAAGCTTTCCACACATATGAACAT
GAATTCAAATGAACATACAGGATTTCAAAAAAGCTCCGCACCTCATTAGC
CTCTGCATTCACATGTCAGCATCATCTACCCGAAACTCGAAAAAGACCCG
CACAAATGTTGAAGTGGGAACGTTTGAGGTATCATATCTCGGGTCTCAGG
TGGAATCTCGAGATGAGAGTTGTTGCGTTGGATTGCATACATTCCAGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7962:2948..3545+

>mRNA_L-elsbetiae_contig7962.16929.1 ID=mRNA_L-elsbetiae_contig7962.16929.1|Name=mRNA_L-elsbetiae_contig7962.16929.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=654bp|location=Sequence derived from alignment at L-elsbetiae_contig7962:2948..3545+ (Laminarionema elsbetiae ELsaHSoW15)
TGGAGAAGAAATATCGCATACCAAGGCGTTCAGTGGGTATGTTGGCACGA
GCGGACAGGACGGCCGAACTCTGTGTCGGTGTTGAGTGGAGGACGTCATC
CGAATATAGAAGAGGATGTCGGCGGAATTGCAGCATTTATTTGCCCGAAG
CCTGCATACTGCTGTCTCGGCATCTGCCCGGGGGGACTTGAAAAGCCCCA
CGTCGAAAGTCCCGAGACTCGGAAAAAACCCGCGCCTGAAAGTCTACATC
GTCACCGCTGGCATTCGCCCTTTACTCTCATCCATTTCAGTGATGGCAGA
AACAGTAGTGTGTACTTAGATGTCTGATGGAGAAGAAATATCGCATACCA
AGGCGTTCAGTGGGTATGTTGGCACGAGCGGACAGGACGGCCGAACTCTG
TGTCGGTGTTGAGTGGAGGACGTCATCCGAATATAGAAGAGGATGTCGGC
GGAATTGCAGCATTTATTTGCCCGAAGCCTGCATACTGCTGTCTCGGCAT
CTGCCCGGGGGGACTTGAAAAGCCCCACGTCGAAAGTCCCGAGACTCGGA
AAAAACCCGCGCCTGAAAGTCTACATCGTCACCGCTGGCATTCGCCCTTT
ACTCTCATCCATTTCAGTGATGGCAGAAACAGTAGTGTGTACTTAGATGT
CTGA
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