mRNA_L-elsbetiae_contig7961.16928.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7961.16928.1
Unique NamemRNA_L-elsbetiae_contig7961.16928.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig7961.16928.1 vs. uniprot
Match: D7FKD3_ECTSI (ENTH domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FKD3_ECTSI)

HSP 1 Score: 141 bits (356), Expect = 1.960e-36
Identity = 90/130 (69.23%), Postives = 98/130 (75.38%), Query Frame = 1 
Query:   10 QALHRSDPSYRIPLADAFDDAEAGVIPLCADSKPAVRDRAVRVSKLLGLDPSSAQAXXXXXXXXXXXXXXXXXDSTNGYAFAPDGDSSS-LATGTTAAAPSGPAVDLLGGFSDDGGAEGGGAGAVTVDFL 396
            +ALHRSDPSYRIPL DAF   E GVIPLCAD KPAVRDRAVRVSKLLGLDPSS QA  XXXXXX         D+T+GY+ APDGD +S + +GTT AAPSGPAVDLLGGFSD  G +G  AG V  D L
Sbjct:  520 EALHRSDPSYRIPLEDAFQGTEVGVIPLCADPKPAVRDRAVRVSKLLGLDPSSVQAAAXXXXXXPSQE-----DATDGYSCAPDGDPASPVISGTTKAAPSGPAVDLLGGFSDQEGGDG--AGVVGDDIL 642
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7961.16928.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FKD3_ECTSI1.960e-3669.23ENTH domain-containing protein n=2 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7961contigL-elsbetiae_contig7961:5683..7974 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score142.9
Seed ortholog evalue1.1e-31
Seed eggNOG ortholog2880.D7FKD3
Preferred nameENTHD2
KEGG koko:K00784
KEGG Pathwayko03013,map03013
Hectar predicted targeting categoryother localisation
GOsGO:0000139,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005654,GO:0005737,GO:0005794,GO:0005802,GO:0006810,GO:0008150,GO:0009987,GO:0012505,GO:0012506,GO:0016020,GO:0016043,GO:0016192,GO:0016604,GO:0016607,GO:0019898,GO:0022607,GO:0030135,GO:0030136,GO:0030276,GO:0030659,GO:0030662,GO:0031090,GO:0031312,GO:0031410,GO:0031965,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0031982,GO:0031984,GO:0032588,GO:0034622,GO:0035459,GO:0035652,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044431,GO:0044433,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0051179,GO:0051234,GO:0065003,GO:0070013,GO:0071840,GO:0097708,GO:0098588,GO:0098791,GO:0098805
EggNOG free text desc.ENTH domain
EggNOG OGs28NHQ@1,2QV38@2759
EC3.1.26.11
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03016
Ec32 ortholog descriptionENTH domain
Ec32 orthologEc-05_005770.1
Exons2
Model size401
Cds size399
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816880.496931-CDS-L-elsbetiae_contig7961:5682..59731622816880.496931-CDS-L-elsbetiae_contig7961:5682..5973Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7961 5683..5973 -
1691683883.241691-CDS-L-elsbetiae_contig7961:5682..59731691683883.241691-CDS-L-elsbetiae_contig7961:5682..5973Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7961 5683..5973 -
1622816880.5076196-CDS-L-elsbetiae_contig7961:7866..79741622816880.5076196-CDS-L-elsbetiae_contig7961:7866..7974Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7961 7867..7974 -
1691683883.2536268-CDS-L-elsbetiae_contig7961:7866..79741691683883.2536268-CDS-L-elsbetiae_contig7961:7866..7974Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7961 7867..7974 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7961.16928.1prot_L-elsbetiae_contig7961.16928.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7961 5683..7974 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7961.16928.1

>prot_L-elsbetiae_contig7961.16928.1 ID=prot_L-elsbetiae_contig7961.16928.1|Name=mRNA_L-elsbetiae_contig7961.16928.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=133bp
MSSQALHRSDPSYRIPLADAFDDAEAGVIPLCADSKPAVRDRAVRVSKLL
GLDPSSAQAAAAAAAAAATATEPSPKDSTNGYAFAPDGDSSSLATGTTAA
APSGPAVDLLGGFSDDGGAEGGGAGAVTVDFLD
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mRNA from alignment at L-elsbetiae_contig7961:5683..7974-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7961.16928.1 ID=mRNA_L-elsbetiae_contig7961.16928.1|Name=mRNA_L-elsbetiae_contig7961.16928.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2292bp|location=Sequence derived from alignment at L-elsbetiae_contig7961:5683..7974- (Laminarionema elsbetiae ELsaHSoW15)
ATGTCGTCTCAGGCGCTTCACCGCTCAGACCCAAGCTACCGAATCCCGCT
GGCGGACGCTTTCGACGACGCGGAGGCGGGCGTCATCCCGCTCTGCGCGG
ACTCGAAGGTGAAGTGGGTGGGTGTTGTAACACCGGTTTTGATCGCTTTC
TCTCCCTGGTGAGAGTGTGTCGGCGCTTTTTCCCGCGAGGCTCGCCGGCT
TGCTTGCTGTCCAGGCTTGCGTTTTGGGATGCCGGCAGCGTGTGCGGGGC
TTGGTGGCCTCTCGCGCCTGCGTGGCCTGCCTTTTCGTCTGGCTGCGTGG
CCTGCCTTCTCGCCTGCCTTCACGGTGCCGCGGATGCTTGCGTATCTTCA
CACATAAAACGAGTGGTTCGAAATGAATTTTTCGCCAACGAACTACTGTG
TATAAATGGATTACGGATTTTGTGCGAGTATGTCTTGGACGGAAAGAATG
GGGTCAGTATGCCTACAACAGTTCCCTCTGGAACGACTTTTTCACAGACT
GGACGTAGGCTGCTGACATTTGTATGATGCATTAATAAAAAAAAACGTCT
TGTCCCTGCCTGTTCTTTTTTTTTTTTTTCGGCATGCGTGTGCACGGCGC
GTCTATCTCTCTCTGCTGTGCCGCTCCTTCTGTTGCGGTAGTCTACGCAG
GTTTTTGGTCGGCGAAACATATGGGGATAAAGTATGGAATCGGGGAATGT
TTGGGGGGTCGGTGGTTAGGGTTAGGCTTTTAGGGTTAGGGTTAGGCTTT
TAGGGTTAGGGTTACGGAACCCCTGCTACTCTATTTCACATATAAACCAA
TATTCCACGTCTTTTCTCGCGAAAGCAGCCCTTCTGTTGTGCCCTCCTGC
CGCAGCCTTCCCTCCCCTAGTAGCCTTCGCAGCTTTTACTGGAAGATATC
ATACGGGATAAAGTATGGAATCGGCTAATGGGGGGTCTGTTTGGGGTTAG
GGGTATGGTTACGGTTACGGAACCCCTGTCTTTTGTCTCCTAATTCACGG
AGTATATATACTGAGTACCGTAGGTGACATGAGATAAGACACCCTGTCTT
ATCTTATGTCACCTACGGTACATAAGACAGGAATTCTTCGCGAAAACGGT
TCTCCCTCCTCCCACACCACATGCACACGTGTTGGTCCGGCAGACGAAAA
GAAAAAAAGTCGGGACAAAAGGGTTGCGGACGTACCATCACGATTTGGCG
AAACCCCTCCGATTTTGTTTTTCTCGACATCATCCTGTTCGTGTTTGTTC
GCCACCGGCGATGCTCGTCGCACAGACTACCCTTGGCCATGCCACCAGCG
GGAGACCTCCAGACAGTCATAATACATGGCCGCAGGCACTTTACGTGCCA
TGATTTTGCTTTGAACTGAGTAAACGCTGTGCTGTTGAAACTGAAACGAG
GGCGTTTGCTGCTCTGCTTCAAACCTGAATTATTTGCTCTTCGGAGGCAA
CTTTCAACACAAAGTTGTCCACCTGTAAAGTTGCCCAAATCGACTGATAC
TTAGCCATCGTGCAGGTCAAATGTCGGTAAAAATTGGGATCGCCACTACG
GCGGTCGTGGTCGGCCTGCAAAAAGCATGGAAAATCGACCAAAATCAAGT
CTGAACGCCAGTCGGACAGCGGGGTATCCACAGAACGGCAAGCAAGATAA
TATGCCTACCTCCACCAGTATCACAAACAATGTAGGATCGGCCAGGCCAG
CTAAACTTGAGACCAAAGTTGTGCACTGGTGTGTAACCCAAATCGCGAGG
TACTTGGAGGGTGTACTTCTTGGTGTCGAAAACACCCTGGTAAGAATTGG
GATCGGCACTACAGCCGGAGGTGTTTGAAGATTACTGCCAGGTCCTACAT
GTCGTCTATAGCGAAGCGAGCTTTGGGAACCCGCAGATTGGGAAAATTTT
GTTCGAAAATAAAAAAAGCCTTTTTCCTACACGGACCAACACGTGTGCAT
GTCTCCCGCCTGTCTTGGTCTCTCACCATCCATGTGCCCCCCAAACAACA
GCCCGCAGTCAGAGACAGGGCGGTACGCGTCTCCAAGCTCCTGGGCCTCG
ACCCTTCCTCCGCGCAAGCGGCGGCGGCAGCGGCGGCAGCGGCAGCAACG
GCGACCGAGCCGTCTCCAAAGGACTCGACCAACGGGTACGCCTTCGCCCC
CGACGGCGACTCTTCCTCTCTCGCGACGGGGACAACGGCGGCGGCACCAT
CCGGTCCCGCCGTCGACCTCCTCGGCGGCTTCTCAGACGACGGGGGTGCG
GAGGGCGGCGGAGCGGGGGCCGTCACCGTCGATTTTCTTGAT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7961:5683..7974-

>mRNA_L-elsbetiae_contig7961.16928.1 ID=mRNA_L-elsbetiae_contig7961.16928.1|Name=mRNA_L-elsbetiae_contig7961.16928.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=798bp|location=Sequence derived from alignment at L-elsbetiae_contig7961:5683..7974- (Laminarionema elsbetiae ELsaHSoW15)
ATGTCGTCTCAGGCGCTTCACCGCTCAGACCCAAGCTACCGAATCCCGCT
GGCGGACGCTTTCGACGACGCGGAGGCGGGCGTCATCCCGCTCTGCGCGG
ACTCGAAGATGTCGTCTCAGGCGCTTCACCGCTCAGACCCAAGCTACCGA
ATCCCGCTGGCGGACGCTTTCGACGACGCGGAGGCGGGCGTCATCCCGCT
CTGCGCGGACTCGAAGCCCGCAGTCAGAGACAGGGCGGTACGCGTCTCCA
AGCTCCTGGGCCTCGACCCTTCCTCCGCGCAAGCGGCGGCGGCAGCGGCG
GCAGCGGCAGCAACGGCGACCGAGCCGTCTCCAAAGGACTCGACCAACGG
GTACGCCTTCGCCCCCGACGGCGACTCTTCCTCTCTCGCGACGGGGACAA
CGGCGGCGGCACCATCCGGTCCCGCCGTCGACCTCCTCGGCGGCTTCTCA
GACGACGGGGGTGCGGAGGGCGGCGGAGCGGGGGCCGTCACCGTCGATTT
TCTTGATCCCGCAGTCAGAGACAGGGCGGTACGCGTCTCCAAGCTCCTGG
GCCTCGACCCTTCCTCCGCGCAAGCGGCGGCGGCAGCGGCGGCAGCGGCA
GCAACGGCGACCGAGCCGTCTCCAAAGGACTCGACCAACGGGTACGCCTT
CGCCCCCGACGGCGACTCTTCCTCTCTCGCGACGGGGACAACGGCGGCGG
CACCATCCGGTCCCGCCGTCGACCTCCTCGGCGGCTTCTCAGACGACGGG
GGTGCGGAGGGCGGCGGAGCGGGGGCCGTCACCGTCGATTTTCTTGAT
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