mRNA_L-elsbetiae_contig7961.16927.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7961.16927.1
Unique NamemRNA_L-elsbetiae_contig7961.16927.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7961.16927.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7961contigL-elsbetiae_contig7961:4512..5470 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size339
Cds size321
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7961.16927.1prot_L-elsbetiae_contig7961.16927.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7961 4512..5454 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816880.3968575-CDS-L-elsbetiae_contig7961:4511..45581622816880.3968575-CDS-L-elsbetiae_contig7961:4511..4558Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7961 4512..4558 -
1691683883.197386-CDS-L-elsbetiae_contig7961:4511..45581691683883.197386-CDS-L-elsbetiae_contig7961:4511..4558Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7961 4512..4558 -
1622816880.414669-CDS-L-elsbetiae_contig7961:5180..54541622816880.414669-CDS-L-elsbetiae_contig7961:5180..5454Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7961 5181..5454 -
1691683883.205968-CDS-L-elsbetiae_contig7961:5180..54541691683883.205968-CDS-L-elsbetiae_contig7961:5180..5454Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7961 5181..5454 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816880.4267802-UTR-L-elsbetiae_contig7961:5454..54701622816880.4267802-UTR-L-elsbetiae_contig7961:5454..5470Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7961 5455..5470 -
1691683883.2161703-UTR-L-elsbetiae_contig7961:5454..54701691683883.2161703-UTR-L-elsbetiae_contig7961:5454..5470Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7961 5455..5470 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7961.16927.1

>prot_L-elsbetiae_contig7961.16927.1 ID=prot_L-elsbetiae_contig7961.16927.1|Name=mRNA_L-elsbetiae_contig7961.16927.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=107bp
MGGGGGGGAGGAAESAAAAPAPAASASPEGLFGDLSVKDGLGSPANAAAG
AAAAAAAEGAVGGGADGGGGGGTSGFSFMGSGGDEAEGTKDAGADLLSGF
GGEAAAA
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mRNA from alignment at L-elsbetiae_contig7961:4512..5470-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7961.16927.1 ID=mRNA_L-elsbetiae_contig7961.16927.1|Name=mRNA_L-elsbetiae_contig7961.16927.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=959bp|location=Sequence derived from alignment at L-elsbetiae_contig7961:4512..5470- (Laminarionema elsbetiae ELsaHSoW15)
GGACGACTTCCTTGGCATGGGGGGGGGCGGCGGTGGCGGTGCAGGGGGGG
CTGCGGAGAGTGCTGCCGCCGCTCCCGCTCCCGCTGCTTCTGCGTCTCCC
GAAGGCTTGTTCGGGGATCTCTCTGTTAAGGATGGACTTGGCTCGCCTGC
GAACGCAGCGGCGGGGGCAGCAGCCGCCGCCGCCGCTGAGGGTGCCGTCG
GTGGGGGGGCCGATGGCGGCGGCGGTGGCGGCACCTCGGGATTTTCTTTC
ATGGGGAGCGGTGGAGACGAGGCGGAGGGGACGAAAGATGGTGAGAGTCT
TTCCGGGCGCGTGTGCGTGGCGTGGTGGTGTGGTGTGGCGCGCAGTGATG
CACGACTCCTCGACTCTTTTGATTGCACAGGGGCAGCTCCGACAGAACGG
GGACCTTTTGTGGTGCGATTTAGGCTTGGGTTTACCCCGGTAGTATGGCA
TGGCACGCGTGTCACCTTCCTTTCGCCCACCAGTATGCAACCAGCCCACC
TCAATCAACTCTCCGCCGCCCTGCAGGATTTGCGTGTTTTGTGCGAGTGC
TCCCGTGTCTCACGGTTACCCCCGCCGAAGACCCCGCTTATCTATTCCTC
TCCTCGACTGTCGTATTTTTATGGCGCATGCCCTAATACAATAGCCCCGC
TTCACACCTGCTCTCCGCCTTCTTCGCCCGCACGCCTGCGTAGCAATCGA
TGCTCTCCGCCGCTACGACCGGCGACATTCACCAAGCGAAGCAGACCACG
CGCATTCTTTTTCAGCGTCTTCGTATGCAACGGGACACCTCGCATTCCCC
GCCGTGTGCGCGGCGTTTTCGAGATGCCCCGATCCCTTCGCGCCCTCCTC
GTTCACCCACGGCTCCCCCTAAGAATAGCCCCCTGTGTTTTTGCCGTGCT
ACCCAAATCCAGCGGGTGCCGACCTTCTGTCCGGATTTGGAGGAGAAGCG
GCGGCGGCG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7961:4512..5470-

>mRNA_L-elsbetiae_contig7961.16927.1 ID=mRNA_L-elsbetiae_contig7961.16927.1|Name=mRNA_L-elsbetiae_contig7961.16927.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=642bp|location=Sequence derived from alignment at L-elsbetiae_contig7961:4512..5470- (Laminarionema elsbetiae ELsaHSoW15)
ATGGGGGGGGGCGGCGGTGGCGGTGCAGGGGGGGCTGCGGAGAGTGCTGC
CGCCGCTCCCGCTCCCGCTGCTTCTGCGTCTCCCGAAGGCTTGTTCGGGG
ATCTCTCTGTTAAGGATGGACTTGGCTCGCCTGCGAACGCAGCGGCGGGG
GCAGCAGCCGCCGCCGCCGCTGAGGGTGCCGTCGGTGGGGGGGCCGATGG
CGGCGGCGGTGGCGGCACCTCGGGATTTTCTTTCATGGGGAGCGGTGGAG
ACGAGGCGGAGGGGACGAAAGATGATGGGGGGGGGCGGCGGTGGCGGTGC
AGGGGGGGCTGCGGAGAGTGCTGCCGCCGCTCCCGCTCCCGCTGCTTCTG
CGTCTCCCGAAGGCTTGTTCGGGGATCTCTCTGTTAAGGATGGACTTGGC
TCGCCTGCGAACGCAGCGGCGGGGGCAGCAGCCGCCGCCGCCGCTGAGGG
TGCCGTCGGTGGGGGGGCCGATGGCGGCGGCGGTGGCGGCACCTCGGGAT
TTTCTTTCATGGGGAGCGGTGGAGACGAGGCGGAGGGGACGAAAGATGCG
GGTGCCGACCTTCTGTCCGGATTTGGAGGAGAAGCGGCGGCGGCGCGGGT
GCCGACCTTCTGTCCGGATTTGGAGGAGAAGCGGCGGCGGCG
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