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Homology
BLAST of mRNA_L-elsbetiae_contig796.16925.1 vs. uniprot
Match: D7FXQ2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXQ2_ECTSI) HSP 1 Score: 236 bits (603), Expect = 5.480e-72 Identity = 147/290 (50.69%), Postives = 172/290 (59.31%), Query Frame = 3
Query: 114 MEEFLRILEVNFKGRKCYLGQYGSPTTAPEANE--------EDQHTKSGPAVGSVVVTLETALEKLVIGAFLGTGPGSEWEYWEGEFGTSELEAHRNSLGWDGHSLKTLGDCFLGAVDGT--PQLSQSQSCAVANEVAVDEHQQRPPEFSTTRD-----------------GGSDAGDDGSTGREGEELSAAVAGTLDLHYAGAGIVGSWDVRRVQSGVSAALMNSMQRSFRAACWRKSTDAVETLASSGSNAKTSSSSRPKSSGAHKAKRQRFAGKGATLIGATSSAEA 902
M+E L LE FKGR+CYLGQY SP P A E + + S P VGSV TLE +LV+GAFL G G WEYWEGEFG SEL +HR+SLGWDGHSL+ L DCF AV+ T P +++ C+ A DEHQQRPPEFS+T GG GDD G + GTLDLHYA AGIVGSW+V RVQ+GVSAALM+SM RS R+AC R+ D E ASS +A + SR K+SGA K KR+R A GA L G SAEA
Sbjct: 13 MQELLANLEARFKGRRCYLGQYVSPKPFPSAPESGGNGNASDSGSSGSSPVVGSVAATLEPP-NRLVLGAFLDRGLGQAWEYWEGEFGPSELASHRDSLGWDGHSLEALADCFACAVEATKLPPPEENRPCSEGALAAADEHQQRPPEFSSTAGVVETDRKGEEEPESGGVGGVGCGDDDGDG-------GSATGTLDLHYARAGIVGSWEVSRVQTGVSAALMHSMHRSIRSACGRQLADTAEAPASSSGSA-DAGLSRAKASGAPKFKRKRVAATGAKLAGVGPSAEA 293
BLAST of mRNA_L-elsbetiae_contig796.16925.1 vs. uniprot
Match: A0A6H5KX18_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KX18_9PHAE) HSP 1 Score: 233 bits (594), Expect = 1.180e-70 Identity = 144/287 (50.17%), Postives = 174/287 (60.63%), Query Frame = 3
Query: 99 KGKDEMEEFLRILEVNFKGRKCYLGQYGSPTTAPE---------ANEEDQHTKSGPAVGSVVVTLETALEKLVIGAFLGTGPGSEWEYWEGEFGTSELEAHRNSLGWDGHSLKTLGDCFLGAVDGT--PQLSQSQSCAVANEVAVDEHQQRPPEFSTTRD------GGSDAGDDGSTGREGEELSA--AVAGTLDLHYAGAGIVGSWDVRRVQSGVSAALMNSMQRSFRAACWRKSTDAVETLASSGSNAKTSSSSRPKSSGAHKAKRQRFAGKGATLIGATSSAEA 902
K + ++EFL LE FKG +CYLGQY SP P A++ + S P VGSVVVTLE +LV+GA L G G WEYWEGEFG EL +HR+SLGWDGHSL+ L DCF GAV+ T P +++ C+ DEHQQRPPEFS+T G + D G G + GTLDLHYA AGIVGSW+V RVQ+GVS ALM+SM RS RAAC R+ D + ASS +A + SR K+SGA K KR+R A GA L GA+ SAEA
Sbjct: 8 KHEGNIQEFLAKLEARFKGIRCYLGQYVSPKPFPSGPESGKSGNASDSGSSSSSNPVVGSVVVTLEPP-NRLVLGALLDRGLGQGWEYWEGEFGPLELASHRDSLGWDGHSLEALADCFAGAVEATKLPLPEENRPCSEGALAVADEHQQRPPEFSSTAGVVETDRTGEEEPDSGVGGXXXXXXXXXXSATGTLDLHYARAGIVGSWEVSRVQTGVSVALMHSMHRSIRAACGRQLADTAKPPASSSGSA-DAGLSRAKASGAPKFKRKRVAATGAKLAGASPSAEA 292
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | expressed unknown protein |
| Ec32 ortholog | Ec-28_001690.1 |
| Exons | 5 |
| Model size | 1227 |
| Cds size | 840 |
| Stop | 1 |
| Start | 1 |
Relationships
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622816880.2904704-UTR-L-elsbetiae_contig796:10417..10482 | 1622816880.2904704-UTR-L-elsbetiae_contig796:10417..10482 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig796 10418..10482 + |
| 1691683883.1307404-UTR-L-elsbetiae_contig796:10417..10482 | 1691683883.1307404-UTR-L-elsbetiae_contig796:10417..10482 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig796 10418..10482 + |
| 1622816880.3638382-UTR-L-elsbetiae_contig796:14549..14871 | 1622816880.3638382-UTR-L-elsbetiae_contig796:14549..14871 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig796 14550..14871 + |
| 1691683883.1887596-UTR-L-elsbetiae_contig796:14549..14871 | 1691683883.1887596-UTR-L-elsbetiae_contig796:14549..14871 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig796 14550..14871 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622816880.303794-CDS-L-elsbetiae_contig796:10482..10612 | 1622816880.303794-CDS-L-elsbetiae_contig796:10482..10612 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig796 10483..10612 + |
| 1691683883.1404312-CDS-L-elsbetiae_contig796:10482..10612 | 1691683883.1404312-CDS-L-elsbetiae_contig796:10482..10612 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig796 10483..10612 + |
| 1622816880.3186285-CDS-L-elsbetiae_contig796:10918..11097 | 1622816880.3186285-CDS-L-elsbetiae_contig796:10918..11097 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig796 10919..11097 + |
| 1691683883.1492658-CDS-L-elsbetiae_contig796:10918..11097 | 1691683883.1492658-CDS-L-elsbetiae_contig796:10918..11097 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig796 10919..11097 + |
| 1622816880.3294237-CDS-L-elsbetiae_contig796:11508..11843 | 1622816880.3294237-CDS-L-elsbetiae_contig796:11508..11843 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig796 11509..11843 + |
| 1691683883.1586795-CDS-L-elsbetiae_contig796:11508..11843 | 1691683883.1586795-CDS-L-elsbetiae_contig796:11508..11843 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig796 11509..11843 + |
| 1622816880.3417246-CDS-L-elsbetiae_contig796:13008..13149 | 1622816880.3417246-CDS-L-elsbetiae_contig796:13008..13149 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig796 13009..13149 + |
| 1691683883.1706617-CDS-L-elsbetiae_contig796:13008..13149 | 1691683883.1706617-CDS-L-elsbetiae_contig796:13008..13149 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig796 13009..13149 + |
| 1622816880.3528101-CDS-L-elsbetiae_contig796:14494..14549 | 1622816880.3528101-CDS-L-elsbetiae_contig796:14494..14549 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig796 14495..14549 + |
| 1691683883.180075-CDS-L-elsbetiae_contig796:14494..14549 | 1691683883.180075-CDS-L-elsbetiae_contig796:14494..14549 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig796 14495..14549 + |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig796.16925.1 >prot_L-elsbetiae_contig796.16925.1 ID=prot_L-elsbetiae_contig796.16925.1|Name=mRNA_L-elsbetiae_contig796.16925.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=280bp
MDGTAGNSSTRKGKDEMEEFLRILEVNFKGRKCYLGQYGSPTTAPEANEE DQHTKSGPAVGSVVVTLETALEKLVIGAFLGTGPGSEWEYWEGEFGTSEL EAHRNSLGWDGHSLKTLGDCFLGAVDGTPQLSQSQSCAVANEVAVDEHQQ RPPEFSTTRDGGSDAGDDGSTGREGEELSAAVAGTLDLHYAGAGIVGSWD VRRVQSGVSAALMNSMQRSFRAACWRKSTDAVETLASSGSNAKTSSSSRP KSSGAHKAKRQRFAGKGATLIGATSSAEA* back to topmRNA from alignment at L-elsbetiae_contig796:10418..14871+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_L-elsbetiae_contig796.16925.1 ID=mRNA_L-elsbetiae_contig796.16925.1|Name=mRNA_L-elsbetiae_contig796.16925.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4454bp|location=Sequence derived from alignment at L-elsbetiae_contig796:10418..14871+ (Laminarionema elsbetiae ELsaHSoW15) TCAACTGGCCACACGACTTCGTGTGCACGTGCACGAGAGCGTGATATTTC
CAGCTCAATAACGCGATGGACGGCACAGCAGGCAATAGCAGCACAAGGAA
GGGCAAGGACGAAATGGAAGAGTTCTTGCGGATATTGGAGGTCAACTTCA
AGGGGAGAAAGTGCTACCTCGGGCAGTACGGGTCCCCCACAACAGGTGGG
CCTACTTGCCGCTGGGTGTAGACTACATAGTGCCAAAGAGATCCAGGCTC
ACGATGCGCTACGACTCACAGACAACGTGTGCGCCGGCTGTGCTTCCTGT
GTGTCTTTGTGATGCCGGCATGCCGCCTTTTGTTTTACAGGACACTGGGT
TGTTTACATATCACACACTTTTGCTTCGATAATTTTTGCGCGCCAAATCC
AAGATGAAAGTGCCCCACAACTTTATCCCGCGCGTCCGATGGTGTTTGAT
GTGTTCACCTTCCACCCCTCGCACGATCCGCCCACCACTTACTATCTCAA
GCGCCGGAAGCGAATGAGGAAGATCAACACACCAAAAGTGGCCCTGCGGT
CGGCAGTGTGGTGGTGACGCTGGAGACGGCGCTCGAAAAGCTCGTGATCG
GAGCTTTCCTCGGCACCGGGCCTGGTAGCGAGTGGGAGTACTGGGAAGGA
GAGTTTGGGACTTCCGAGCTTGAGGCACACGTGAGGGCATGGCGGTTGTG
GCGCACTTGTAGCCTAGCATTCAACACGTGGATAGTCGATGCATCAATCG
TAGGGTTACTTTCGGGGTTTAGTGACCTTAGCCTTTGCATCACTTAGACT
AGTGGTCGCAGAAAATACCGCAATAGCTATCGGCTAACTGTTGTCACGCT
TCCGGAGCACAGCTACATACTACGGGTAGTATTTGCGAAGCGACAATTTG
GCTCTGCTCCTGCGTTGTTCTGACAACATCCAACTTTGTTGCTTGTTCGT
AATTCATATTCGTGCTCGATATTTGGACTCCCAGAAGAACTATCGGCCTG
CTCGAAGTTGCTTCGAAGTCGATAATGTTCGTGTTCTTTACACACGCCCT
TTTGGCCAAACTATTGTCGCGCATCTTTCGGCCTGTTTCAGCGAAATAGC
TTGGGATGGGATGGCCACAGCCTGAAGACGCTCGGGGACTGCTTCCTAGG
CGCCGTAGACGGAACACCGCAGCTATCGCAATCCCAATCCTGCGCTGTTG
CGAACGAGGTAGCAGTAGACGAGCATCAGCAACGGCCTCCTGAGTTTTCC
ACCACCAGGGATGGGGGTTCTGACGCCGGAGATGACGGAAGTACTGGACG
AGAAGGGGAGGAACTAAGCGCCGCTGTTGCCGGCACCCTGGATCTCCACT
ATGCGGGGGCTGGAATCGTCGGGTCATGGGATGTTCGGCGTGTGCAGAGC
GGGGTATCTGCTGCTCTGATGAACAGGTAAGCGTGGGTAGTGGGGTATCC
GTAAGAAAACAAACAAAAATATGCCAACTAACAGAGAGTGTTACGTTAGC
GCGTGGTTCTGGCGTTTCGAAAAAAGGCCACGGACATTTAGTACGATATT
CAGACACGCAGATAACTTCTTGAATGTGCTGGGAAACATCGAGGAGACAC
GGAGGAGACCCAGATCATGTTTCCTCTGTGCGGTCCTCCGCGCGTCTTCT
GATCTAAAACATGTTATGAGTCCCATGCGCGGGATGTACACATGGTATAT
CGGCGGGCGTATATTGTAGGGTAGATGTGGGATGTGGGTAGTACTCTATA
TGTAGAACACCAAGAACTATCTCTAGACTACGTGGAAATTCTCGCAAAAT
ATAGATATGTGTGTTGTCTTCACCCGCAAACACACACACACACGCGCGCG
CGTTCCCTCTTCGGACACACACGGTGGCGTTAGGCAGCAGTTAGCGCTGC
ATCCCTCGACCAAGCTCCGAGAACATGTACATGTTGAAAAAGAAAGACCA
CAGCTTCTCTTCAGGGCGGCTGTTCCCAAATCCCAAACGTACCCCTGAGA
GAAGAAACAGCGGTGCAAACGGGCGGATACGATCTGAGTCGGCTAAGTCG
GCGCGATCTGATTGGCTGGCTGGATTGGTTCCTTTTTTTTAACGCGCGTG
CCTATTGTACATTCGACGTATGATCACATTCATCACGCGCACCAGAGGCA
ACAGCCCCAAGACAGCGGATAACGGAGAAACACAGCCCACGACTCCATTG
CAACCACTGTTCATCACTTGTTCTGCACGCCCGTTTTTGAAATCGCATTG
TGTGCAGTCCCGTTTGGGGAGCTTTTGGAGTTTTCGCTGAACTTGCCACC
GAGAATACAGATCTCCGTGTACAAGTTTCTCTTGTTCGAACCAGGCCTTC
GTCGGTTATTGTGCTCACCTCAAGCGGATGCTTCAAACGAGTCCAATACG
GTACCCTACCGTTCTTGAGCAACCTATGGGGCTCTGGCGTTCCTGAAAGA
AGAGCGTGCTACTTACTGTCTAACGCGCGCTATCCGACTTCGTCGCGCTT
TTACCGCATTGCCACGGCATGTGTCCGAATCCCTCTCTGAAAACCCGATG
TCGCCGCGTGTCTGCCCGGACTCACGTCGCTCCTTTCTCAGTATGCAAAG
GAGCTTTCGCGCTGCATGCTGGCGGAAGTCGACAGACGCCGTCGAAACTC
TTGCTTCTTCGGGCAGTAACGCCAAGACCTCTTCCTCGTCGCGACCGAAG
TCTTCGGGAGCGCACAAGGCCAAGAGGCAAAGGTGGGACTGTTTCGACTC
TCTACTGAACTACTGCAGAGCCGACGGCTGCAGTATATATTCAGATAATC
TCCGGCGTGCTTCCTAATCATCATCTGGCGTACCCCCCTCTTCGTAGTTC
TGCCAGCCTTTTACTGTCGTTATGTCTAGGGGCTCCGAATGGAACGTACT
TCTGCCAGTTCACTGGTCGTTGTCTGCTCTTTCTTCCAGCCAGTAGATAG
TGTTGACGGTGTGTGGTGTGGCTGGACGATAACAGCCGGGTGAGGCCAGC
ACTATCAGCACGGGTTATTTAGCTTGCTGGTGTATGTGTTTGAGCTTGTG
GGTCGAAGATGGTTTGCTGTGACTCTTGCCAGGCTTTGCTGGTTGATGGT
AGACGACGAGAGTGAGAGAGCGGGGCTCGTTGGCCTGCTCTCGCTCTCGA
AAACAGAACACAACAATATCCAAGGAGACCCTAATATACCAACCTTACAC
GGACCGCGGAAAGCTGGTCTATTCGGGGCAATTCACCCGAGATGCTGTCT
GCGGTTATGCCGCGTATACTGAACTGGCACTACTGCGCAGCATCGCGGCT
TTGCTGATGCCAACCTACTGGCTATATCGAACGTTAAAGTGTCAGCGACA
GCGACCAAACAAAGCTTCGTTAAGATGCTGTCGTTGTGTTGTCTGCTGCA
CAGAGCAACGTATGACGCATGGCCAATATCTCTGACAGATAGTGCCATAC
GATAGTGCCATATCGGGGATAGGAGAAGCTTCTAGCTTTGAGTGCGCTCC
TCGCACTTAGAACGGCTAACGCGTTCGGTTAGCGCTTCATTGCTATTGTC
CTCAGCTTGTGCGAACTACATATCCTGAGGCCAGAGAATTGCGGCCCTGA
ACAAAGATATGAGCGAACACTTTTTTCCCTCACAAAAAGGACGAGTGGCT
ATTATATAGGCCTATCTATGAATCCGCAGGGTTTTTGGACACCTAAAACA
CAGGCCTCGGGGAAGCTGATATCCGATATATCAGCGAGCCAGCGCGCACA
GTCAGCTGGCGCGCAAGCCCCAACCCTTCCCCCCCAGGCTCGTGAGGGGG
CCTCGCCGAAGGCGCCGCCGGTAGACATAAATGTAGGGCCATTTGTTTCA
GTTCCCTTGATAATCCGCCCAAATTGATGCATGAGCTCATGACTTTTTGG
CTTGAAATTCAAGTAGCCCTCAAACAAAGATTGCGATGTTTTTTATTATG
TCTGACAAGACTCAAGAATTGGTCTCGATTAATAACCGTACATTTGTACC
ATTTGAAGTTAGACCCCGCATGCATCATGTATAGATATGTCTCCGACGCT
TCAATCTCATGTTGTTTCCCGTCGCAGGTTTGCAGGGAAAGGTGCGACAT
TGATAGGAGCGACATCTTCGGCGGAGGCGTAAACTTGATGGACCAATGTA
CCGTTGAAAGTATCTACATACCGTTGAACTCCTTCGCGTTTTATGGCAAA
AAGGCGTACGAGCGCGTTTGTCTGTTCGACTACGCCAGCGTTTTGGTTGA
TTCCTGGTCCGATTTTTGTGGATAGAACATCGAGTGCTGTGTGGCCGGCT
GCCTCGCACGCCCAGCTGGGAAATTCGCTTGGCGACAACACCCGCCGGCC
GTATATTGATGGTTGTGAGCTATTAATGCTGTGCGGATTGATTGGGTCAT
CAAAACTCAAAAACGGAATCGAGTTCAGCCTTCATACGCAACTGAAAAAT
GGAG back to topCoding sequence (CDS) from alignment at L-elsbetiae_contig796:10418..14871+ >mRNA_L-elsbetiae_contig796.16925.1 ID=mRNA_L-elsbetiae_contig796.16925.1|Name=mRNA_L-elsbetiae_contig796.16925.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1680bp|location=Sequence derived from alignment at L-elsbetiae_contig796:10418..14871+ (Laminarionema elsbetiae ELsaHSoW15) ATGGACGGCACAGCAGGCAATAGCAGCACAAGGAAGGGCAAGGACGAAAT GGAAGAGTTCTTGCGGATATTGGAGGTCAACTTCAAGGGGAGAAAGTGCT ACCTCGGGCAGTACGGGTCCCCCACAACAGATGGACGGCACAGCAGGCAA TAGCAGCACAAGGAAGGGCAAGGACGAAATGGAAGAGTTCTTGCGGATAT TGGAGGTCAACTTCAAGGGGAGAAAGTGCTACCTCGGGCAGTACGGGTCC CCCACAACAGCGCCGGAAGCGAATGAGGAAGATCAACACACCAAAAGTGG CCCTGCGGTCGGCAGTGTGGTGGTGACGCTGGAGACGGCGCTCGAAAAGC TCGTGATCGGAGCTTTCCTCGGCACCGGGCCTGGTAGCGAGTGGGAGTAC TGGGAAGGAGAGTTTGGGACTTCCGAGCTTGAGGCACACCGCCGGAAGCG AATGAGGAAGATCAACACACCAAAAGTGGCCCTGCGGTCGGCAGTGTGGT GGTGACGCTGGAGACGGCGCTCGAAAAGCTCGTGATCGGAGCTTTCCTCG GCACCGGGCCTGGTAGCGAGTGGGAGTACTGGGAAGGAGAGTTTGGGACT TCCGAGCTTGAGGCACACCGAAATAGCTTGGGATGGGATGGCCACAGCCT GAAGACGCTCGGGGACTGCTTCCTAGGCGCCGTAGACGGAACACCGCAGC TATCGCAATCCCAATCCTGCGCTGTTGCGAACGAGGTAGCAGTAGACGAG CATCAGCAACGGCCTCCTGAGTTTTCCACCACCAGGGATGGGGGTTCTGA CGCCGGAGATGACGGAAGTACTGGACGAGAAGGGGAGGAACTAAGCGCCG CTGTTGCCGGCACCCTGGATCTCCACTATGCGGGGGCTGGAATCGTCGGG TCATGGGATGTTCGGCGTGTGCAGAGCGGGGTATCTGCTGCTCTGATGAA CAGCGAAATAGCTTGGGATGGGATGGCCACAGCCTGAAGACGCTCGGGGA CTGCTTCCTAGGCGCCGTAGACGGAACACCGCAGCTATCGCAATCCCAAT CCTGCGCTGTTGCGAACGAGGTAGCAGTAGACGAGCATCAGCAACGGCCT CCTGAGTTTTCCACCACCAGGGATGGGGGTTCTGACGCCGGAGATGACGG AAGTACTGGACGAGAAGGGGAGGAACTAAGCGCCGCTGTTGCCGGCACCC TGGATCTCCACTATGCGGGGGCTGGAATCGTCGGGTCATGGGATGTTCGG CGTGTGCAGAGCGGGGTATCTGCTGCTCTGATGAACAGTATGCAAAGGAG CTTTCGCGCTGCATGCTGGCGGAAGTCGACAGACGCCGTCGAAACTCTTG CTTCTTCGGGCAGTAACGCCAAGACCTCTTCCTCGTCGCGACCGAAGTCT TCGGGAGCGCACAAGGCCAAGAGGCAAAGTATGCAAAGGAGCTTTCGCGC TGCATGCTGGCGGAAGTCGACAGACGCCGTCGAAACTCTTGCTTCTTCGG GCAGTAACGCCAAGACCTCTTCCTCGTCGCGACCGAAGTCTTCGGGAGCG CACAAGGCCAAGAGGCAAAGGTTTGCAGGGAAAGGTGCGACATTGATAGG AGCGACATCTTCGGCGGAGGCGTAAGTTTGCAGGGAAAGGTGCGACATTG ATAGGAGCGACATCTTCGGCGGAGGCGTAA back to top
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