mRNA_L-elsbetiae_contig788.16830.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig788.16830.1
Unique NamemRNA_L-elsbetiae_contig788.16830.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig788.16830.1 vs. uniprot
Match: D7FUR2_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FUR2_ECTSI)

HSP 1 Score: 440 bits (1132), Expect = 1.970e-150
Identity = 224/260 (86.15%), Postives = 236/260 (90.77%), Query Frame = 2 
Query:   80 MKSFAAVAATSLCALAPAAAFVPG--VPLAGVRSAAAAPSKLSMAATPERSVSIPIDPYPEGLDGEMVGDVGFDPAGFANNPPSWVQGPGTGTAGRVRWYREAELAHCRVAMLAATGWIFPELYHFPGNTVLGPDRFAEMNPLLAYGNIPNAGGIQIVATILILETIRLNRSIRNPDGVPGDIGLGQGEGRWNPFNFNYTDEEYKEKQLQELKNGRTAMIAITGMYFQTLVQGDGILTQLAHASAAPESVAKAGYFFNPL 853
            MKSF A AATSLCALAPA+AFVPG  +PLAGVRSA   PSKL+MAATPERS+SIPIDPYPEGLDGEMVGDVGFDPAGFANNPPSWVQG GTGTA RV+WYREAELAH RVAMLAA GWIFPE+YHFPGNTVLGPDRFAEMNPLLAY NIPNAGGIQIV TILILETIRLNRSIR+  GV GDIGLGQGEGRWNPFNFNYT+EEY EKQLQE+K+GRTAMI ITGMYFQTLVQG GIL QL  A + P+SVAKAGYFFNPL
Sbjct:    1 MKSFVA-AATSLCALAPASAFVPGASLPLAGVRSA---PSKLAMAATPERSISIPIDPYPEGLDGEMVGDVGFDPAGFANNPPSWVQGEGTGTAARVKWYREAELAHGRVAMLAAAGWIFPEIYHFPGNTVLGPDRFAEMNPLLAYDNIPNAGGIQIVVTILILETIRLNRSIRSDSGVAGDIGLGQGEGRWNPFNFNYTEEEYAEKQLQEIKHGRTAMIGITGMYFQTLVQGQGILHQLGEAFSTPDSVAKAGYFFNPL 256
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BLAST of mRNA_L-elsbetiae_contig788.16830.1 vs. uniprot
Match: A0A835YWE6_9STRA (Light harvesting complex protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWE6_9STRA)

HSP 1 Score: 247 bits (631), Expect = 3.150e-75
Identity = 136/253 (53.75%), Postives = 174/253 (68.77%), Query Frame = 2 
Query:   95 AVAATSLCALAPAAAFVPGVPLAGVRSAAAAPSKLSMAATPERSVSIPIDPYPEGLDGEMVGDVGFDPAGFANNPP-SWVQGPGTGTAGRVRWYREAELAHCRVAMLAATGWIFPELYHFPGNTVLGPDRFAEMNPLLAYGNIPNAGGIQIVATILILETIRLNRSIRNPDGVPGDIGLGQGEGRWNPFNFNYTDEEYKEKQLQELKNGRTAMIAITGMYFQTLVQGDGILTQLAHASAAPESVAKAGYFFNP 850
            AVAA +L A APAAAFVP  P+       A PSK+ + A  ERS +IP D  PE LDG +VGDVGFDPAGF+NNPP +W+ G   G    ++WYREAE+ H R AMLAA GW+ PE  HFPGN  +G D FA+ NP  A  ++P+AG  QI ATI  +E  R+NR +R  D  PGD+GLGQG    NPF F+Y++E+Y+EKQLQE+KNGR AM+AI GM+ Q  +   G++++L+ A   P++V KAGYFF P
Sbjct:    3 AVAALALLA-APAAAFVPVTPV-------ATPSKVVLQA--ERSTAIPFDKRPENLDGTLVGDVGFDPAGFSNNPPRAWLIG---GEGRSLKWYREAEIVHGRTAMLAALGWVVPEFVHFPGNEAVGVDAFAKTNPWEALYSVPDAGLWQIAATIFAVEVYRINRVVRG-DKEPGDLGLGQGG--LNPFGFDYSEEQYREKQLQEIKNGRLAMVAIIGMFLQAAINQQGLISELSGAFTFPDAVGKAGYFFPP 239
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BLAST of mRNA_L-elsbetiae_contig788.16830.1 vs. uniprot
Match: A0A836CAI0_9STRA (Light harvesting complex protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAI0_9STRA)

HSP 1 Score: 245 bits (626), Expect = 1.930e-74
Identity = 139/259 (53.67%), Postives = 174/259 (67.18%), Query Frame = 2 
Query:   80 MKSFAAVAATSLCALAPAAAFVPGVPLAGVRSAAAAPSKLS-MAATPERSVSIPIDPYPEGLDGEMVGDVGFDPAGFANNPP-SWVQGPGTGTAGRVRWYREAELAHCRVAMLAATGWIFPELYHFPGNTVLGPDRFAEMNPLLAYGNIPNAGGIQIVATILILETIRLNRSIRNPDGVPGDIGLGQGEGRWNPFNFNYTDEEYKEKQLQELKNGRTAMIAITGMYFQTLVQGDGILTQLAHASAAPESVAKAGYFFNP 850
            MK+ AA+A     A+APAAAF+P        SA  AP++ S M    ERS +IP D  PE LDG +VGDVGFDPAGF+NNPP +W+ G   G    ++WYREAE+ H R AMLAA GWI PE  HFPGN  +G D FA+ NP  A  ++P+AG  QI ATI  +E  R+NR +R     PGD+GLGQG    NPF FNYT+EEYK KQLQELKNGR AM+AI GM+ Q+ +  +G++ QL+ A   P++V KAGY+F P
Sbjct:    1 MKAVAALA----FAVAPAAAFLPV-------SAPVAPAQGSVMKMVSERSTAIPFDKRPENLDGSLVGDVGFDPAGFSNNPPRAWLIG---GEGRSLKWYREAEIVHGRTAMLAALGWIVPEFVHFPGNEQVGVDAFAKTNPWDALYSVPDAGLWQIAATIFAVEVFRINRVVRG-GAEPGDLGLGQGG--LNPFGFNYTEEEYKTKQLQELKNGRLAMVAIIGMFLQSAITNEGLIAQLSGAFTFPDAVGKAGYYFPP 242
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BLAST of mRNA_L-elsbetiae_contig788.16830.1 vs. uniprot
Match: W7TTD7_9STRA (Light-harvesting protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7TTD7_9STRA)

HSP 1 Score: 241 bits (615), Expect = 3.860e-72
Identity = 126/238 (52.94%), Postives = 158/238 (66.39%), Query Frame = 2 
Query:  158 LAGVRSAAAAPSKLS--------MAATPERSVSIPIDPYPEGLDGEMVGDVGFDPAGFANNPPS-WVQGPGTGTAGRVRWYREAELAHCRVAMLAATGWIFPELYHFPGNTVLGPDRFAEMNPLLAYGNIPNAGGIQIVATILILETIRLNRSIRNPDGVPGDIGLGQGEGRWNPFNFNYTDEEYKEKQLQELKNGRTAMIAITGMYFQTLVQGDGILTQLAHASAAPESVAKAGYFF 844
            LA + SA  AP+ L+        MAA  + S ++P D  P  LDG + GDVGFDP GF+NNPP  W+ G   G+   ++WYREAE+ H RVAMLAA GW+FP +YH PGN  +G D FA +NP  A   +P AG  QI AT+  +E  R+NR IR  D   GD+GLGQGEGRWNPF FNY++EEY EKQLQE+KNGR AM+ I G+  Q  V G GI+ QL  +   PE+V+KAGY+F
Sbjct:   55 LASMASAFIAPTPLARRATGAVRMAADDDLSTALPFDKRPPNLDGSLPGDVGFDPVGFSNNPPRPWLIG---GSGRSLKWYREAEIVHGRVAMLAALGWVFPNIYHLPGNEDVGVDAFANLNPFGALTTVPAAGLWQIAATVGAIELFRVNRVIRG-DKEAGDLGLGQGEGRWNPFGFNYSEEEYAEKQLQEIKNGRLAMVGILGLLLQASVTGKGIVQQLGGSFDVPEAVSKAGYYF 288
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BLAST of mRNA_L-elsbetiae_contig788.16830.1 vs. uniprot
Match: A0A6V1NAG2_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1NAG2_HETAK)

HSP 1 Score: 218 bits (554), Expect = 1.070e-63
Identity = 130/257 (50.58%), Postives = 156/257 (60.70%), Query Frame = 2 
Query:   80 MKSFAAVAATSLCALAPAAAFVPGVPLAGVRSAAAAPSKLSMAATPERSVSIPIDPYPEGLDGEMVGDVGFDPAGFANNPPS-WVQGPGTGTAGRVRWYREAELAHCRVAMLAATGWIFPE-LYHFPGNTVLGPDRFAEMNPLLAYGNIPNAGGIQIVATILILETIRLNRSIRNPDGVPGDIGLGQGEGRWNPFNFNYTDEEYKEKQLQELKNGRTAMIAITGMYFQTLVQGDGILTQLAHASAAPESVAKAGYFF 844
            M  FAAVAA  +  +    AF    PL   ++ A + S LSM    ERS ++P+DPYPEGLDG M GDVGFDPAGFANNPP  W+ G G  +   + WYREAELAH RVAMLA  GW FPE  YHFPGN + G D FAE NP+ A    P  G IQI   I  +E  R+   IR  D  PGD+ LGQ  G  NPF  NY D+EY   +++E+K+GR AM+ I GM FQ    G  +  QL  A   PE+V  AGY+F
Sbjct:    1 MAKFAAVAAALMMGVD---AFQAPAPL---KNVATSTSSLSMMQG-ERSKALPMDPYPEGLDGTMAGDVGFDPAGFANNPPKKWLYGGGENS---LDWYREAELAHGRVAMLATVGWFFPETFYHFPGNEIYGQDIFAEANPIKALSVAPAGGLIQIALVIFFVEVWRIKNVIRG-DRAPGDLNLGQ-RGAINPFGLNYDDDEYFLMEVREIKHGRLAMLGIMGMIFQQAATGLSLGQQLGGAFTFPEAVKSAGYYF 245
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BLAST of mRNA_L-elsbetiae_contig788.16830.1 vs. uniprot
Match: A0A0G4H236_9ALVE (Uncharacterized protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4H236_9ALVE)

HSP 1 Score: 218 bits (554), Expect = 4.990e-63
Identity = 109/203 (53.69%), Postives = 131/203 (64.53%), Query Frame = 2 
Query:  218 ERSVSIPIDPYPEGLDGEMVGDVGFDPAGFANN-PPSWVQGPGTGTAGRVRWYREAELAHCRVAMLAATGWIFPELYHFPGNTVLGPDRFAEMNPLLAYGNIPNAGGIQIVATILILETIRLNRSIRNPDGVPGDIGLGQGEGRWNPFNFNYTDEEYKEKQLQELKNGRTAMIAITGMYFQTLVQGDGILTQLAHASAAPESV 823
            +RS+++P D YP GLDG + GD GFDPAGF NN P  W+ G   G    ++WYREAE+ H RVAMLA  GWIFPE+ HF GN  +G D FAE+NPL A    P AG +QI   I  LE  R+ R I+  D   GD+GLGQGEGRWNPF FNY+ EEYK  Q +E+KNGR AMI I  M  Q    G+G+LTQL   +     V
Sbjct:   96 DRSIALPFDKYPPGLDGTLAGDYGFDPAGFTNNLPRQWLIG---GEERSLKWYREAEITHARVAMLATLGWIFPEIAHFGGNAQVGQDAFAELNPLKAIYTAPAAGLVQIAFGIFALEYFRIKRVIQG-DAAAGDLGLGQGEGRWNPFKFNYSPEEYKTMQTREIKNGRLAMIGILAMIAQANASGEGLLTQLGQKAVGVSVV 294
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BLAST of mRNA_L-elsbetiae_contig788.16830.1 vs. uniprot
Match: A0A0G4ELJ2_VITBC (Uncharacterized protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4ELJ2_VITBC)

HSP 1 Score: 211 bits (537), Expect = 4.850e-61
Identity = 118/242 (48.76%), Postives = 153/242 (63.22%), Query Frame = 2 
Query:   80 MKSFAAVAATSLCALAPAAAFVPGVPL---AGVRSAAAAPSKLSMAATPERSVSIPIDPYPEGLDGEMVGDVGFDPAGFANN-PPSWVQGPGTGTAGRVRWYREAELAHCRVAMLAATGWIFPELYHFPGNTVLGPDRFAEMNPLLAYGNIPNAGGIQIVATILILETIRLNRSIRNPDGVPGDIGLGQGEGRWNPFNFNYTDEEYKEKQLQELKNGRTAMIAITGMYFQTLVQGDGILTQL 793
            MK  AAVA  ++CA A    FVP   L   + +R +   PS   M  + +RS+++P+D  P  LDG + GD GFDP GF+NN P +W+ G   G    ++WYREAEL H RVAMLAA GWIFPE++H PGN  +G D FAE NP  A   +P  G  QI  T+  +E  RL R +R  +   GD+GLGQGEGRWNPF F + ++EY   Q++E+KNGR AMIAI GM  Q  V G+G+L Q+
Sbjct:    2 MKVVAAVALLAVCANA----FVPQGVLKRDSPLRKSLTRPSMAEMGES-DRSLALPMDKRPPNLDGSLPGDFGFDPVGFSNNLPRTWLIG---GDERSLKWYREAELVHSRVAMLAALGWIFPEIWHLPGNAAVGVDAFAETNPWKALTTVPKEGLWQIAGTVSAIEFFRLRRVVRG-EKEAGDLGLGQGEGRWNPFGFAFDEDEYYRMQVREIKNGRLAMIAIIGMMLQAAVTGEGLLEQI 234
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BLAST of mRNA_L-elsbetiae_contig788.16830.1 vs. uniprot
Match: F0Y1D8_AURAN (Uncharacterized protein LHC9 n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y1D8_AURAN)

HSP 1 Score: 201 bits (510), Expect = 2.770e-57
Identity = 111/225 (49.33%), Postives = 148/225 (65.78%), Query Frame = 2 
Query:  185 APSKLSMAATPERSVSIPIDPYP---EGLDGEMVGDVGFDPAGFANNPP-SWVQGP-GTGTAGRVRWYREAELAHCRVAMLAATGWIFPELYHFPGNTVLGPDRFAEMNPLLAYGNIPNAGGIQIVATILILETIRLNRSIRNPDGVPGDIGLGQGEGRWNPFNFNYTDEEYKEKQLQELKNGRTAMIAITGMYFQTLVQGDGILTQLAHASAAPESVAKAGYFF 844
            AP+K +   +     SIP    P     LDG +VGDVGFDP GF+   P +W QG  G G+   ++ +REAEL H R+A LA  GWIFPELYHFPG      D FA+MNP  A   IP+AG +QI+A +  LE +R+NR +++P  +PGD+GLGQGEGRWNPF F+YT EEY +KQLQE+K+ R AM+ I G+  ++     G+L QL  + + PE V+KAG++F
Sbjct:   24 APAKAAAPVSRGTGPSIPSIALPWTETNLDGSLVGDVGFDPLGFSKYAPGAWWQGDEGDGS---LKIFREAELMHGRIAQLACLGWIFPELYHFPGKD----DAFAKMNPYEAVDAIPSAGWLQILAFMSSLEILRVNR-LKDPAYIPGDLGLGQGEGRWNPFGFDYTAEEYYDKQLQEIKHSRLAMLGIAGLAAKSSGTDIGVLQQLGESFSRPEFVSKAGFYF 240
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BLAST of mRNA_L-elsbetiae_contig788.16830.1 vs. uniprot
Match: A0A6S8TCV5_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A6S8TCV5_9STRA)

HSP 1 Score: 188 bits (478), Expect = 1.340e-52
Identity = 113/250 (45.20%), Postives = 154/250 (61.60%), Query Frame = 2 
Query:  110 SLCALAPAAAFVPGVPLAGVRSAAAAPS--KLSMAATPERSVSIPIDPYPEGLDGEMVGDVGFDPAGFANNPPS--WVQGPGTGTAGRVRWYREAELAHCRVAMLAATGWIFPELYHFPGNTVLGPDRFAEMNPLLAYGNIPNAGGIQIVATILILETIRLNRSIRNPDGVPGDIGLGQGEGRWNPFNFNYTDEEYKEKQLQELKNGRTAMIAITGMYFQTLVQGD-GILTQLAHASAAPESVAKAGYFF 844
            +LC  APAA F  G    G + A AAP   K S +     SV++P    P  LDG +VGDVGFDP GF+   P   WV   G G+   ++ +REAEL H R+A LA  GW+FPE+ H+PG      + F +MNP  A   IP AG  QI+  ++  E  R+N+ +++P  +PGD GLGQG GRWNPF FNYT EEY+EKQLQE+K+ R AM+ I G+  ++   GD G+L Q+  + ++PE  + AG++F
Sbjct:    6 ALCLAAPAAGF--GF---GKKGAKAAPKAQKRSSSGAQYPSVALPWTTTP--LDGSLVGDVGFDPLGFSKYAPGAWWVGDEGDGS---LKIFREAELMHGRIAQLACLGWVFPEIAHWPGKD----NAFGKMNPFDALDAIPKAGWYQILGFMVACEVWRINK-LKDPSYMPGDSGLGQGPGRWNPFGFNYTPEEYREKQLQEIKHCRLAMLGIVGLAAKSSGAGDVGVLQQVGESFSSPEYTSLAGFYF 240
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BLAST of mRNA_L-elsbetiae_contig788.16830.1 vs. uniprot
Match: A0A6S8TQ14_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A6S8TQ14_9STRA)

HSP 1 Score: 188 bits (477), Expect = 2.120e-52
Identity = 122/249 (49.00%), Postives = 154/249 (61.85%), Query Frame = 2 
Query:  119 ALAPAAAFVPGVPL----AGVRSAAAAPSKLSMAATPERSVSIPIDPYPEGLDGEMVGDVGFDPAGFANNPP-SWVQGP-GTGTAGRVRWYREAELAHCRVAMLAATGWIFPELYHFPGNTVLGPDRFAEMNPLLAYGNIPNAGGIQIVATILILETIRLNRSIRNPDGVPGDIGLGQGEGRWNPFNFNYTDEEYKEKQLQELKNGRTAMIAITGMYFQTLVQGD-GILTQLAHASAAPESVAKAGYFF 844
            ALAPAAAF  G  L    A   +A AAP K S  A P  SV++P       LDG +VGDVGFDP GF+   P +W QG  G G+   ++ +REAEL H R+A LA  GW+FPE+ HFPG        F +MNP  A   IPNAG  QI+A +  LE  R+N+ +++P  VPGD+ LGQG GRWNPF F+YT EEY EKQLQE+K+ R AM+ I G+  ++   GD G+L  L      PE V KAG++F
Sbjct:   10 ALAPAAAFNFGDILKKKSAPKPAAPAAPQKSSGGAYP--SVALPFTTT--NLDGSLVGDVGFDPLGFSKYAPGAWWQGDEGDGS---LKIFREAELMHGRIAQLACLGWVFPEIAHFPGKD----GAFGKMNPFEAVDAIPNAGWYQILAFMASLEVYRVNK-LKDPAYVPGDLSLGQGPGRWNPFGFDYTPEEYAEKQLQEIKHCRLAMLGIIGLAAKSSGAGDVGVLAMLG--GGKPEFVTKAGFYF 244
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig788.16830.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FUR2_ECTSI1.970e-15086.15Light harvesting complex protein n=2 Tax=Ectocarpu... [more]
A0A835YWE6_9STRA3.150e-7553.75Light harvesting complex protein n=1 Tax=Tribonema... [more]
A0A836CAI0_9STRA1.930e-7453.67Light harvesting complex protein n=1 Tax=Tribonema... [more]
W7TTD7_9STRA3.860e-7252.94Light-harvesting protein n=3 Tax=Monodopsidaceae T... [more]
A0A6V1NAG2_HETAK1.070e-6350.58Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A0G4H236_9ALVE4.990e-6353.69Uncharacterized protein n=1 Tax=Chromera velia CCM... [more]
A0A0G4ELJ2_VITBC4.850e-6148.76Uncharacterized protein n=2 Tax=Vitrella brassicaf... [more]
F0Y1D8_AURAN2.770e-5749.33Uncharacterized protein LHC9 n=1 Tax=Aureococcus a... [more]
A0A6S8TCV5_9STRA1.340e-5245.20Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A6S8TQ14_9STRA2.120e-5249.00Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig788contigL-elsbetiae_contig788:1712..8729 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score441.4
Seed ortholog evalue2.9e-121
Seed eggNOG ortholog2880.D7FUR2
Preferred nameLhca6
KEGG koko:K08908
KEGG Pathwayko00196,map00196
Hectar predicted targeting categorychloroplast
GOsGO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006091,GO:0008150,GO:0008152,GO:0009314,GO:0009416,GO:0009507,GO:0009526,GO:0009532,GO:0009534,GO:0009535,GO:0009536,GO:0009570,GO:0009579,GO:0009628,GO:0009637,GO:0009639,GO:0009765,GO:0009768,GO:0009941,GO:0009987,GO:0010114,GO:0010218,GO:0010287,GO:0015979,GO:0016020,GO:0016168,GO:0019684,GO:0031409,GO:0031967,GO:0031975,GO:0031976,GO:0031984,GO:0034357,GO:0042651,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0046906,GO:0048037,GO:0050896,GO:0055035,GO:0097159,GO:1901363
EggNOG free text desc.photosynthesis, light harvesting
EggNOG OGs2CNEI@1,2QVPT@2759
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00194
Ec32 ortholog descriptionLight harvesting complex protein
Ec32 orthologEc-19_004240.1
Exons3
Model size1639
Cds size777
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig788.16830.1prot_L-elsbetiae_contig788.16830.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig788 1791..4185 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816871.1344411-UTR-L-elsbetiae_contig788:1711..17901622816871.1344411-UTR-L-elsbetiae_contig788:1711..1790Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig788 1712..1790 +
1691683875.9397552-UTR-L-elsbetiae_contig788:1711..17901691683875.9397552-UTR-L-elsbetiae_contig788:1711..1790Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig788 1712..1790 +
1622816871.1798651-UTR-L-elsbetiae_contig788:4185..42261622816871.1798651-UTR-L-elsbetiae_contig788:4185..4226Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig788 4186..4226 +
1691683875.9888089-UTR-L-elsbetiae_contig788:4185..42261691683875.9888089-UTR-L-elsbetiae_contig788:4185..4226Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig788 4186..4226 +
1622816871.1928618-UTR-L-elsbetiae_contig788:7987..87291622816871.1928618-UTR-L-elsbetiae_contig788:7987..8729Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig788 7988..8729 +
1691683876.0011065-UTR-L-elsbetiae_contig788:7987..87291691683876.0011065-UTR-L-elsbetiae_contig788:7987..8729Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig788 7988..8729 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816871.146195-CDS-L-elsbetiae_contig788:1790..24141622816871.146195-CDS-L-elsbetiae_contig788:1790..2414Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig788 1791..2414 +
1691683875.9569802-CDS-L-elsbetiae_contig788:1790..24141691683875.9569802-CDS-L-elsbetiae_contig788:1790..2414Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig788 1791..2414 +
1622816871.159137-CDS-L-elsbetiae_contig788:4032..41851622816871.159137-CDS-L-elsbetiae_contig788:4032..4185Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig788 4033..4185 +
1691683875.9753115-CDS-L-elsbetiae_contig788:4032..41851691683875.9753115-CDS-L-elsbetiae_contig788:4032..4185Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig788 4033..4185 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig788.16830.1

>prot_L-elsbetiae_contig788.16830.1 ID=prot_L-elsbetiae_contig788.16830.1|Name=mRNA_L-elsbetiae_contig788.16830.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=259bp
MKSFAAVAATSLCALAPAAAFVPGVPLAGVRSAAAAPSKLSMAATPERSV
SIPIDPYPEGLDGEMVGDVGFDPAGFANNPPSWVQGPGTGTAGRVRWYRE
AELAHCRVAMLAATGWIFPELYHFPGNTVLGPDRFAEMNPLLAYGNIPNA
GGIQIVATILILETIRLNRSIRNPDGVPGDIGLGQGEGRWNPFNFNYTDE
EYKEKQLQELKNGRTAMIAITGMYFQTLVQGDGILTQLAHASAAPESVAK
AGYFFNPL*
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mRNA from alignment at L-elsbetiae_contig788:1712..8729+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig788.16830.1 ID=mRNA_L-elsbetiae_contig788.16830.1|Name=mRNA_L-elsbetiae_contig788.16830.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=7018bp|location=Sequence derived from alignment at L-elsbetiae_contig788:1712..8729+ (Laminarionema elsbetiae ELsaHSoW15)
AAACACAGCAAGGAAGTGTTGCATCACACCACTCCGAAGGCGCACACACT
CAGCCAAAACCCAACCCCCACTGCACACGATGAAGTCTTTCGCCGCAGTA
GCAGCCACCTCCCTGTGCGCCCTGGCGCCGGCCGCGGCCTTCGTGCCGGG
AGTGCCTCTCGCCGGCGTGCGCAGCGCGGCGGCGGCACCCTCAAAGCTCT
CCATGGCGGCCACGCCCGAGAGGTCCGTCTCCATCCCGATCGACCCGTAC
CCGGAGGGCCTCGACGGCGAGATGGTGGGCGACGTCGGCTTCGACCCCGC
CGGATTCGCGAACAACCCGCCGTCGTGGGTGCAGGGACCGGGCACGGGCA
CCGCTGGGCGCGTCAGGTGGTACCGCGAGGCTGAGCTCGCCCACTGCCGC
GTTGCCATGCTCGCCGCCACGGGCTGGATTTTCCCCGAGCTCTACCACTT
CCCGGGCAACACCGTGCTGGGCCCGGACCGGTTCGCCGAGATGAACCCCC
TCCTCGCGTACGGCAACATCCCCAACGCGGGAGGCATCCAAATCGTGGCG
ACCATCCTTATCCTCGAGACCATCAGACTCAACAGGAGCATCCGCAACCC
AGACGGCGTCCCAGGAGACATCGGGCTCGGACAGGGGGAGGGACGCTGGA
ACCCCTTCAACTTTAACTACACGGACGAGGAGTACAAGGAGAAGCAGCTC
CAGGTAAGCGCTCCTGCTCTCCCTCTCTTTCGTTTTTTTATGAAACATCA
TGTGTTGTAGTGTGCTGCATCATGTGTGTGGGGTCTTTTCCGTCACCTCT
TCATGAGCGAGAAAAAAAGTGCGTTTTGATCGAGCACATGTTGAACACAA
GCCATCTCTGGTCCGGGCTCGCAGGCGAAAACAGCGAAGCCTGCCTGTGA
CACTGACGCATTAACGGGTCTGATTATTGGCAACCAAGAACGTCGTTTGC
CGCATTGTGTAGCTGCAGAGAACAGCAGTTTTGTGTTTTCACTCAAAATC
GACGGTATTTTGGTCGTGTGTGGTTTTGCTCGCTTTCTGGCGAACCCCAG
CTGACTCAGCCAGGATGGATGCACACAGGCCGTGCCTTACCAAACGTTTC
CCCCAGAGGCCTTGCCTGCTGCGTGTAGCGAGGTGGTCTCTTGACGACTA
CATGGTGATGTCTATTCCACAAGTGCAGGCAGTTGTAATTCAACCAACGC
TGCTCGTGTGTTGGTTGTGTTGGTTTTACGAGTACGGCCTCTCGGCCTCA
ACTGGTAAAAGAGAAATGAACTACATACCTGTGTTTCACATCACTCAACT
GTGTAGTTCATCGGTTACTGGGCAGCATTTTCTGGCCATTCTTTGCACGG
AGGAGAGGAGGTAACAAACGCCGAACCGCTGGCTTACCGCTAAAGAGGCA
GGCAAATTTAGCGGTATGAATGATCAGTCACCGTCTTGTGCCAGGCCGTT
TTGGATCTATGCAGGAAGAAGAACGAGTATTCATCTCGAAACACACACGA
GGATTCGAATCAATTCAGCGAAAATGCTTCCCAGAGATGAACACCTTCCT
CCAAGCCAGTAGCGTTGGCTTGTTTCACCAGCATTGCAACACGCATCAGT
AGCTCGCATGACCGTACACCATTTATATCACAGATCTGAGAGCTGACCAT
CTTCCTACCCGGTGTGCGGCGGTGTTTTGAAACATTGGAAGTACTGATTC
CTCACATCAACTAATGCGTCCGTGGGCAAGAGATCTCAACAAATCAATGA
ACATATTTCGGTAGTGGCCTCTGCCGCTGACGTACTTTTTTAGCTCACCA
AAAGCATCAATAAATATGGCCTGCTGCGTCCTACTCTATATACTCAAGTA
CTGCCTTGACAGTCCACGGTTTGCCTGCGCCGGCGTTTGTTTTGTACAAA
GGCCTTGCAGTTTCACGTACGATTTCTTTTTGATTTGTGCGAACGGTGAA
TTTACCGCCCAGACACTTCACTCTCCCCGAAAGTTGTGCAGTATCCATGA
TGCACCGACGTCCCTTGAATAGAAACATACTCGAGGACCGCTGACCCTCG
ACCTTGAAGGCAGTTGAACAAAAATTGCAGTACGTGTATTCGTACATCCA
GACCGTATCAACTGCTGTGCTCGCGGACATCAGGCTGGCTTGAACAAAGC
CCAACCTGGAACCAAACCCCGCACGGCCAAAACTATTTTCGCTCGACTAC
TGCATGCAAAAACACAGGAGACACCCAACGATTTTGCTCTGTCCATTCAA
TCGCGTTTTTTTCTCCTCTGCCTTGCTTTCCGCCGCACTTCTGCGGTGTT
TTTTTTCTTTTCGTTTCTCAGGAGCTCAAGAACGGCCGTACCGCCATGAT
CGCTATCACTGGCATGTACTTCCAGACCCTCGTCCAGGGTGACGGGATCC
TTACCCAGCTGGCCCATGCGTCCGCGGCGCCGGAAAGCGTGGCCAAGGCC
GGATACTTCTTCAACCCGCTGTAAACTCGTAACCGTCCCCGAGAGGGGGG
TTGCTTCGCCGGAGGGTGAGTGAATGCGTTGGGCTTGATGGTCGTGATCG
TGGGCGTGAGAGTGAGTGTTGGGAGCTGTACAGCATGCGTTGTTTTTTCG
CGCGGTTTGTTTCGGGTCCGTTTTAGGCGGAAGCACTTGCGTGTCAGCAG
CAATGCTTGGCACACACGCTGAACCCGTCGCAAAATGGTGAAAGCAAGGC
CAAGGAACTTCAAAATTCGCGTCCACCGATGCGTACGAAAACCATATCTG
TAAGCAAGGCTGATTTCGTGCCGAAAACTTTCAAGACTGCAAAGGTGACA
AGTTCCACAACAGGCAGACCCTCTGAAATAGCTTCCTCTGTATAAGCAAG
AAGCTACGAGCGATTTGTGCTTGCAGCTTCGGACGGTATTAACAACCGTC
CGCCTGGAACTAGTTTTGCACAAGTTGAACGTGGACTGCTCACAAATATC
AAAAACTTGCAGTCGTGCCGTTGCCCCGTGAGGCACGGCACCTGCAGAAT
AGCAATCTCCGGCAGTTAGGTTGGATTCACAGGAGCGCCAATAAAGATAG
CTTGTACAATACAGAATGACCCCAACACTGTGTGACCAGAGCAAAATGAG
CGCCGCTTCGTCAAAACCTAAGCCTTGCGCTGAGCCCGGAAAACAAGGGG
TGTCAAGTATATCCTATGTTCTGCTGTTTTGAATGTTCTTTGCCTTGGCC
ATCAAATCTAGCCCACGAATGCGTCTGTTTGTCCTGAAGAAGTTGCCTAC
GCCGGGCTTCTTGAAATTTCCGGGTTGTCTTAACTTCCGGGACCGTGTTG
TACCATTCAAATAGCATGTCGACAAGTCTTGAGGCGAACATAGCCACGCA
TCGATCACCCGAGCTACAGGGAGATGCGAAGGCTGTCGACCTAACATTAT
GACGTTGTGTCAGCGGCAAAAAAAGCATACAGCTTGGTCCCTTCTTACCT
GCAACCGATTAAGCCGCTGACCCAACGTCATAATGTTAGGTCGACAGCCT
TCGCATCTCCCTGTAGCTCGGGTGATCGATGCGTGGCTATGTTCGCCTCA
AGACTTGTCGACATGCTATTTGAATGGTACAACACGGTCACGGAATTTAA
GATATTTCCCAAACCCCGCCATGATGATAGGTCGACAGCCTTCGCATCTC
CCTGTAGCTCGGGTCCCCGATGGGGGGCTATGTTCGCCTCAAGACTTGTC
GACATCCTATTTGAATGGTACAACACGGTCTCGGAAGTTAAGACAATCCG
AAAATTCCGAGAATGTTCGCCTCAAGACTTGACATCCTATGTGAACGGTA
CAACACGGTCCCAGAAGTTAAGGGGACGGGTAGGGGTACCCATTTATCAG
TATGCGCCTATTTCGAAGAATATCACATACCCCCGCAGAATATCACGGAG
CCTCTCTTGAAGTTTGTGGGCGTTCCAAAAATCTCCGCATGTTTTGACAG
TCCTGACCAAAATCAGAGGTACTCTGCGAATATCAGCCGTTTTTTCGGTG
TTTCTTGGCCATACTTCCAACCACCTCTCACGCGTCGGACATGTAAGGTA
TGGGCTATTTAGCTGTGACACCTCTCCAATATTCCACACTCTTCGAAAAC
AGCCGGGCCACAATCGCGTCGAGTCCGTTTCTTGATTAGTGCAAACCTCA
CGGTGCTACGCCTCGGGGCGCAGTTCCAAATATTCACCCGGCTGACCGCA
AAAAAGACCATCGGAAAAACGGGGTAGTGTGCACCAGCACATAGAATGCG
TCACTCACAGCTGCCTGCTACCGCTACCCATGACACGCGACGGCTCCTTC
ACAACACATCAGTAGGCCCTGCCAGCGGCTTGCGCTGTGCTTCCTTGTGA
GGGCCTCGCTCGGTGACTTCGTGCGCACCAAACTGTGAGCTGAGGTCCTC
GGACAGCTCTTTCGAAAGGGGTGATTTTGGACCCTCAGGAGACGAATATC
TTTGCCTTCAAGGCAGCTAGAAATTAGGCGCAGACCTTTTATCTGCAGAG
AAGTGCAAGCTGTTGCGTGTGAGTTATTCTGGGGGTGTTGCAGCAGGATG
CTAAGGGGCGAACTGGAAAGTGCATTTGAGTGCGCTTTTGGAAGGGCCCG
TACGGTTGATTTTTGGCGTAACCAAAAAAGGGCTTTTAAAACAGTCAATC
GTGCTAATCACGGAGCCCCTGGGTCCAAAGTGCACTGTGGGGCCCCCCCC
TACCCGTAGGTCAAGACAATCCGGAAATTTCAAGAAGCCCGGCGTAGGCA
ACTTCTTCAGGACAAACAGACGCATTCGTGGGCTAGATTTGATGGCCAGG
CAAAGAACATTCAAAACAGCAGAACATAGGATATAATTGACACCCCTTGT
TTTCCGGGCTCAGCGCAAGGCTTAGGTTTTGACGAAGCGGCGCTCATTCT
GCTTTGGCCACCCAGTGTTGGGTCATTCTGTATTGTACAAGCTATCTTTA
TTGGCGCTCCTGTGAATCCAACCTAACTGCCGGAGATTACTATTCTCAAG
TGGATGCGGTTTGCAAATCTTGCCTTCTTCCTGCAATTTTTTTCTCGAAG
TCGACTGTTAACAACAGGGCTTCAAAACGAAGATATTTTGGTCATACTGT
CGACAAAATATCGTTGACGTTTTTGTTTGCGGCGCGGGCAGGTTGGCGGT
CACCCACTGTTACTGTTTGGCTCATGTGGCAGGTGTTGTGTTCTCACAGC
CTCTGACCTTTTGTAGGGCAGAAAACCAGAATCGAAAAGTGCGCAGTTCC
CCGACGGCCGATGGTGTGTACCACCTGGACGACCGGTGCGATTGGATTTC
TCGGAAAATTCATACAAATCCGATTGCACCTCCGATACTATGCTACACGC
AGGGCCTATGCCCCACACGACTAGTACGCCCAGAGATATCACCAGGTGGG
ACACGCCTAGATTTCTACGCCTAGAATTCTGATTGCGATCATCGCCCTGC
GGGCCGAGACGTGGGCAGTGCTCAGCTTTCACCTAAAAAGCGGCCGGATA
CCCTCGAAACCTGCTAGTTGCAAAAGTCGTCAGTTCGAATCTCTCTAGGG
GTGAACACTTTAAATTCGCAGTTACAAGCGAATAAACCCGAAAAGTTGGT
CAAATCACAAGCTTTGACTTAACCGTTGATAAAGGAAGGGAAAGCCGTAC
TAGTCTCGCGATAAAAACTGAAGGCAAAGCATCGCAGGAGGAAGGAGAGG
CAAAAAAAAACAAAAGGAACCGGAAGAAAAAAAAAACCGTTGTTCCCCTC
CTGTAAGATACCGGCGGTTACGTCATGCTACGAAGAAGCAGCACCAAAAC
GTGCGTGCATGTTGCACACACACCGAAACAGGCGTTTGAATAAATGGGTC
GAAAACACACACACCACCTGGACCAAAACCTTCAATCTTATTGTACTTCG
TCACAGAAGCACATGCCTGATGTGCTTCGCGTGCGACGGTGCGATTGGGG
CCGAGAACTGGATGATGCTCAGCTCTTCCTTTTTGACTGCAGTTTTCACG
GTGCTTAGCTCTATTGCTGACTGCTTAGTATTCACGTAATTTGTCGGGAA
GTTGCGCAGTTCTCCGTTCTGGTTCGCTGCCCTTGACGAAACGATCTAAT
GGCCTCAGAAGGGGCCCAAAAATGAAGCCGTCTATTTACTGCGACAGTCG
TATTAAGTTCTCAGTCGAGAGAGGCATCGTGTCCACGAGGAGTATTGACG
CCGGGTCTCCCACTCTCCGTTCTATTTTTGTCGTCGCTTCCCACCGTCCT
GGCCTTTTCTTTCCGGTGCGCTGCAGGTCTCTTTAGGGGCCGTCGCTTGT
TGGAGGATGAGATAGCCCGCATTATCTTTGGACGGGCCCCGTGGGTTGGT
TTTTCCGACACGCTTGGGTCACCCTGTTTTTCATTAACCTTCGGTGGCAA
CTGGAGAACGAGAAGATGTAGCTAGCATGGCGCCACCTGATGGGAGGGGG
TGGGGGGGGGGATGTTGTCGTCGTGGTGTCGGCTTCTTTAGCCACCCGTC
CAGGTTTAGAAGGGAAGCTGCATTGTTAGTAGCTGGCTGTCCCCTCCCAC
GCTCCCGGCTTTCGCTTGTTGTGGATGATTAGCGTGCGTCTCTTTTCATT
TTTTGTGGTGGTTATACCCCTCCCCTCCCCCCGTATCACAGCCGCTGCTG
AGTTCTCGAGGAGGGTCCGGCGAACGGTGGCTATTTAAGGACGGCCCTGT
GTTTTGCTTTCATGAGGCGTCTGTTATGTGGCTTTTTTTTCCCGCCCCCG
TTTGTTTGCCCGTTGTGCCGAAAGAGAAACCGCAACAACGAGTGGTTTTC
GTGTTTAGATTTCCGACGATGATTTGAGACGGTATGGCAGGTGCGACCAC
CAACTCGGGGATTAGAAGCCGTTTTTTGTGTCCCACAAGGTAGAGTAGAA
GTATGTCGATTTCGAAGGAGGGGATGCAACCTCGGTTGTTCGATGGGTAG
TTTGTTTCTGCCGAAAGGATTGTGGCGTCGTATCTTTTCCCTCCTGTGTT
GTGGTGCCTAGAACTAGT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig788:1712..8729+

>mRNA_L-elsbetiae_contig788.16830.1 ID=mRNA_L-elsbetiae_contig788.16830.1|Name=mRNA_L-elsbetiae_contig788.16830.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1554bp|location=Sequence derived from alignment at L-elsbetiae_contig788:1712..8729+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAAGTCTTTCGCCGCAGTAGCAGCCACCTCCCTGTGCGCCCTGGCGCC
GGCCGCGGCCTTCGTGCCGGGAGTGCCTCTCGCCGGCGTGCGCAGCGCGG
CGGCGGCACCCTCAAAGCTCTCCATGGCGGCCACGCCCGAGAGGTCCGTC
TCCATCCCGATCGACCCGTACCCGGAGGGCCTCGACGGCGAGATGGTGGG
CGACGTCGGCTTCGACCCCGCCGGATTCGCGAACAACCCGCCGTCGTGGG
TGCAGGGACCGGGCACGGGCACCGCTGGGCGCGTCAGGTGGTACCGCGAG
GCTGAGCTCGCCCACTGCCGCGTTGCCATGCTCGCCGCCACGGGCTGGAT
TTTCCCCGAGCTCTACCACTTCCCGGGCAACACCGTGCTGGGCCCGGACC
GGTTCGCCGAGATGAACCCCCTCCTCGCGTACGGCAACATCCCCAACGCG
GGAGGCATCCAAATCGTGGCGACCATCCTTATCCTCGAGACCATCAGACT
CAACAGGAGCATCCGCAACCCAGACGGCGTCCCAGGAGACATCGGGCTCG
GACAGGGGGAGGGACGCTGGAACCCCTTCAACTTTAACTACACGGACGAG
GAGTACAAGGAGAAGCAGCTCCAGATGAAGTCTTTCGCCGCAGTAGCAGC
CACCTCCCTGTGCGCCCTGGCGCCGGCCGCGGCCTTCGTGCCGGGAGTGC
CTCTCGCCGGCGTGCGCAGCGCGGCGGCGGCACCCTCAAAGCTCTCCATG
GCGGCCACGCCCGAGAGGTCCGTCTCCATCCCGATCGACCCGTACCCGGA
GGGCCTCGACGGCGAGATGGTGGGCGACGTCGGCTTCGACCCCGCCGGAT
TCGCGAACAACCCGCCGTCGTGGGTGCAGGGACCGGGCACGGGCACCGCT
GGGCGCGTCAGGTGGTACCGCGAGGCTGAGCTCGCCCACTGCCGCGTTGC
CATGCTCGCCGCCACGGGCTGGATTTTCCCCGAGCTCTACCACTTCCCGG
GCAACACCGTGCTGGGCCCGGACCGGTTCGCCGAGATGAACCCCCTCCTC
GCGTACGGCAACATCCCCAACGCGGGAGGCATCCAAATCGTGGCGACCAT
CCTTATCCTCGAGACCATCAGACTCAACAGGAGCATCCGCAACCCAGACG
GCGTCCCAGGAGACATCGGGCTCGGACAGGGGGAGGGACGCTGGAACCCC
TTCAACTTTAACTACACGGACGAGGAGTACAAGGAGAAGCAGCTCCAGGA
GCTCAAGAACGGCCGTACCGCCATGATCGCTATCACTGGCATGTACTTCC
AGACCCTCGTCCAGGGTGACGGGATCCTTACCCAGCTGGCCCATGCGTCC
GCGGCGCCGGAAAGCGTGGCCAAGGCCGGATACTTCTTCAACCCGCTGTA
AGAGCTCAAGAACGGCCGTACCGCCATGATCGCTATCACTGGCATGTACT
TCCAGACCCTCGTCCAGGGTGACGGGATCCTTACCCAGCTGGCCCATGCG
TCCGCGGCGCCGGAAAGCGTGGCCAAGGCCGGATACTTCTTCAACCCGCT
GTAA
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