mRNA_L-elsbetiae_contig7876.16829.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7876.16829.1
Unique NamemRNA_L-elsbetiae_contig7876.16829.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7876.16829.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7876contigL-elsbetiae_contig7876:5772..8558 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-14_004960.1
Exons3
Model size570
Cds size492
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7876.16829.1prot_L-elsbetiae_contig7876.16829.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7876 5772..7745 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816871.0703053-CDS-L-elsbetiae_contig7876:5771..61151622816871.0703053-CDS-L-elsbetiae_contig7876:5771..6115Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7876 5772..6115 -
1691683875.8791568-CDS-L-elsbetiae_contig7876:5771..61151691683875.8791568-CDS-L-elsbetiae_contig7876:5771..6115Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7876 5772..6115 -
1622816871.0837836-CDS-L-elsbetiae_contig7876:7597..77451622816871.0837836-CDS-L-elsbetiae_contig7876:7597..7745Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7876 7598..7745 -
1691683875.9010437-CDS-L-elsbetiae_contig7876:7597..77451691683875.9010437-CDS-L-elsbetiae_contig7876:7597..7745Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7876 7598..7745 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816871.094095-UTR-L-elsbetiae_contig7876:7745..77581622816871.094095-UTR-L-elsbetiae_contig7876:7745..7758Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7876 7746..7758 -
1691683875.9124546-UTR-L-elsbetiae_contig7876:7745..77581691683875.9124546-UTR-L-elsbetiae_contig7876:7745..7758Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7876 7746..7758 -
1622816871.1048439-UTR-L-elsbetiae_contig7876:8495..85581622816871.1048439-UTR-L-elsbetiae_contig7876:8495..8558Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7876 8496..8558 -
1691683875.92685-UTR-L-elsbetiae_contig7876:8495..85581691683875.92685-UTR-L-elsbetiae_contig7876:8495..8558Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7876 8496..8558 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7876.16829.1

>prot_L-elsbetiae_contig7876.16829.1 ID=prot_L-elsbetiae_contig7876.16829.1|Name=mRNA_L-elsbetiae_contig7876.16829.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=164bp
MSSANHCYWGTQFSRNVSVHYAFRGQWIAGLETTAMPRQFQSEQLQERGG
QQVAQALYGDHRRHSCPDLLSVPRGGDEGTNTTASQGPADGLGAGAVVDS
LQLSVMVDAAAKTDETGGGQPAGFQGRGKYEREYCCPGAYDGDAAETVSM
TSGSGSNASTSGSP
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mRNA from alignment at L-elsbetiae_contig7876:5772..8558-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7876.16829.1 ID=mRNA_L-elsbetiae_contig7876.16829.1|Name=mRNA_L-elsbetiae_contig7876.16829.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2787bp|location=Sequence derived from alignment at L-elsbetiae_contig7876:5772..8558- (Laminarionema elsbetiae ELsaHSoW15)
CAGTCTTCATAACCCTCGGACGCAGCTTCAGGCAGTGCAAGCTGATCCAC
GGACATAGAACAAGTGAGTCACAACATGTTCTTCAAGGGATCGACAGCGC
GTCCACAATCCTGTCACACTTTTACACGCGAGGCGTGGAGATCAGCCAGA
GTCCACATCTGTAGTCTGCATAACAACATACACATACAATGGATCTATAT
AACAAGTTGCACACCCTGTGCATGGCAATCTAGTCTTGCTAGTTTTGCTT
TCAACTCCTGCAATGTAGCTGTGGTGCGACGTACGTAGCTGAGGTAGTCA
ATGCCGAAACTTCAGGGAGCGATGAAAGGAGGAACTATACAGGGATAAGC
GGATCTGCTGTTCTCATGTAGACTAGTCTATGTGTCGAACATTTATGATT
TCCGTATACCCTTTCACGGCAGATGCGGCGGAATAACTTATCCCCCAACC
CCCAACCCCCAACTGCTGCAAGGCCACAAGGTTCTCGGCGACCAACGGCA
CACAAACCAGCGAACATATATATTTGCACACATACACAGCTACCCGGAGC
AAGCCACGCGTTTGTTATCGGAAACGTCTTTGAGTGGAGCTAAAAATATG
CCCCGATGCGTGACGCGTGCCCATCTTTGAAAATAAATCTGAGAATCAAA
ATCTTCTTTTTCCGTTATGAACGTCTCTTGCCATGTCGAAGGGGTACACT
GGTAAACTCGGTCGGCAGGTGTGATAAATATATATCACCCTCTGTGGTGA
GTTTCATTCCACCCCTTCCACGATCACCGTTAACTGTAATCCTCGGTCAG
GGTCTTCTGCTCCATGTCGAGCGCAAACCACTGCTATTGGGGAACACAGT
TTTCGAGGAACGTTAGCGTGCACTACGCGTTTCGAGGGCAGTGGATTGCG
GGGCTGGAGACAACCGCCATGCCGCGGCAATTTCAATCGGAACAGCTACA
GGAGAGAGGAGGTGAGCTGGGAGGAGACGTAAGAGAGGATCGGGGCTGAA
TATCCATTGATACACGTGTAGACTATGTGCGTGTGGAAAGTCTTTCTTTC
CCGCGTATTTGATATTTGCTCGCCCTGACGATCTTTCTTTCCCCCCTTGG
GTTGCTGCTTTTCAAAACTTAGCTAGAACCTAATTATGGGCAGCTAGCTT
ATCTATACAGATATCTCCGCCCAGCAAGATTTTTCGGCGTGGTGAGAGCT
GGGATCCATTGTTTGGGGCTTCACGGGGGTGCGAGAAAAGGATGTACAAA
AATATTCCTGCATCTAGACTATCTGGGATCGTCGTCGGGCGCGTACGCTA
CACAATGTACTTTTATATATGTACGGGTGGATGCACACCTCGGGTGGCAA
TAGCTGATACTTGTATGTACGTGTTGTGTACTAAATGTTGTATGTCGTAT
TAGACTATAGCAAACCTAGATAACAGCTCACGTGCTATGCTTGTCGAGCT
ATGCGCAAAGCGCTGCACACGTACACAGTAAGTGTTCGGCAATACGAAGT
AGATAAGCACGCGCGGGATTCTTTTGGAGGTTAGATAGACTACGTTATTG
TAAGCATACCGGGTGATGAGACACAGGCGTTCCCTGGGCGAACACACGAC
AGCCACAATAGCTGCTTCTCCTTCTCTATGCATGTACACATCGGTATTGA
AAAAGAACAGCAGCGGACTTTTTTCTTTAAAGCCAACGGCAAAAACACAA
CGAAAGAGGAAAAACACCCCTCCCTCTGGCCGATAAACGTGGAAGTTCAC
ATTACAAAAAAAAGGCGCCATATATGTAGCTTCTCGTCTACTTCTTGGCG
GGTTTTCGTGGGCCTACAATACACGGCTCACTGGTGCGCGCAGTTTTTCA
TTTTTGTTTTGTTTGCCGTGGTCCGACAATGTTGAGAACGGGCACAGCCA
ACGTACATAGATACGTACGTTGATCTCTGCCACAATTTGATCACGACGGA
GAACAGAGGATGCACATACTCCGGTACAATACTTAAAATAGGTAGGTCAC
CCCCTCTCTTTCTTCTTTTTTCTACTCCCTCGATGTTGTTTCTTGTACAT
ACTCCTGGTCTGTGTACACAATTCCTACCTTTAGTAAGACGCAGAATCCA
AATCAAAGCTGCTCTCGAAGCTGCAGAGAGAAGGTGTGGGTTTACAATTA
AGCAACGGTGATTTCTCGTATTTCATATTTCAACGGAATACTTAATTATT
GGTCTTTTGCCTGTTTTGTAAAATACTTCCATAGCCGCTGTATCACGGTT
GATCTTCCGACACGCGCACCCAAATACTGCGAAGTTTACGTTTGCCAAAA
GCCGAAAAATTTGACCCGGCACTTCAAAATAAATGCCTTGTGAAAGGTAG
ACTACAGCAGGTGGTACCTACAAAACCAAGCTTAAGCAATCCATCCCTCG
CCACGCCGGCACGACACCGGCCTTTTTTTTTTCTCCTCTCCAGGGCAACA
AGTTGCACAGGCCTTGTATGGTGACCATCGGCGCCATTCATGCCCTGACC
TTCTGAGCGTGCCCCGCGGCGGCGACGAAGGCACCAACACGACCGCATCC
CAAGGGCCGGCAGATGGCCTTGGCGCAGGTGCCGTCGTCGACTCCTTGCA
GCTTTCAGTAATGGTCGACGCGGCGGCGAAGACGGACGAAACAGGAGGAG
GGCAGCCCGCTGGCTTCCAGGGCCGCGGCAAATACGAGAGAGAATACTGC
TGTCCCGGTGCTTACGACGGCGATGCTGCGGAGACCGTGTCCATGACGAG
CGGCAGCGGCAGCAACGCCAGCACCAGCGGCAGCCCC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7876:5772..8558-

>mRNA_L-elsbetiae_contig7876.16829.1 ID=mRNA_L-elsbetiae_contig7876.16829.1|Name=mRNA_L-elsbetiae_contig7876.16829.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=984bp|location=Sequence derived from alignment at L-elsbetiae_contig7876:5772..8558- (Laminarionema elsbetiae ELsaHSoW15)
ATGTCGAGCGCAAACCACTGCTATTGGGGAACACAGTTTTCGAGGAACGT
TAGCGTGCACTACGCGTTTCGAGGGCAGTGGATTGCGGGGCTGGAGACAA
CCGCCATGCCGCGGCAATTTCAATCGGAACAGCTACAGGAGAGAGGAGAT
GTCGAGCGCAAACCACTGCTATTGGGGAACACAGTTTTCGAGGAACGTTA
GCGTGCACTACGCGTTTCGAGGGCAGTGGATTGCGGGGCTGGAGACAACC
GCCATGCCGCGGCAATTTCAATCGGAACAGCTACAGGAGAGAGGAGGGCA
ACAAGTTGCACAGGCCTTGTATGGTGACCATCGGCGCCATTCATGCCCTG
ACCTTCTGAGCGTGCCCCGCGGCGGCGACGAAGGCACCAACACGACCGCA
TCCCAAGGGCCGGCAGATGGCCTTGGCGCAGGTGCCGTCGTCGACTCCTT
GCAGCTTTCAGTAATGGTCGACGCGGCGGCGAAGACGGACGAAACAGGAG
GAGGGCAGCCCGCTGGCTTCCAGGGCCGCGGCAAATACGAGAGAGAATAC
TGCTGTCCCGGTGCTTACGACGGCGATGCTGCGGAGACCGTGTCCATGAC
GAGCGGCAGCGGCAGCAACGCCAGCACCAGCGGCAGCCCCGGCAACAAGT
TGCACAGGCCTTGTATGGTGACCATCGGCGCCATTCATGCCCTGACCTTC
TGAGCGTGCCCCGCGGCGGCGACGAAGGCACCAACACGACCGCATCCCAA
GGGCCGGCAGATGGCCTTGGCGCAGGTGCCGTCGTCGACTCCTTGCAGCT
TTCAGTAATGGTCGACGCGGCGGCGAAGACGGACGAAACAGGAGGAGGGC
AGCCCGCTGGCTTCCAGGGCCGCGGCAAATACGAGAGAGAATACTGCTGT
CCCGGTGCTTACGACGGCGATGCTGCGGAGACCGTGTCCATGACGAGCGG
CAGCGGCAGCAACGCCAGCACCAGCGGCAGCCCC
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