mRNA_L-elsbetiae_contig787.16824.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig787.16824.1
Unique NamemRNA_L-elsbetiae_contig787.16824.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig787.16824.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig787contigL-elsbetiae_contig787:17208..19033 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size727
Cds size723
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig787.16824.1prot_L-elsbetiae_contig787.16824.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig787 17208..19031 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816870.4843323-CDS-L-elsbetiae_contig787:17207..173451622816870.4843323-CDS-L-elsbetiae_contig787:17207..17345Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig787 17208..17345 +
1691683875.3889782-CDS-L-elsbetiae_contig787:17207..173451691683875.3889782-CDS-L-elsbetiae_contig787:17207..17345Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig787 17208..17345 +
1622816870.4973395-CDS-L-elsbetiae_contig787:18134..183441622816870.4973395-CDS-L-elsbetiae_contig787:18134..18344Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig787 18135..18344 +
1691683875.403692-CDS-L-elsbetiae_contig787:18134..183441691683875.403692-CDS-L-elsbetiae_contig787:18134..18344Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig787 18135..18344 +
1622816870.508348-CDS-L-elsbetiae_contig787:18656..190311622816870.508348-CDS-L-elsbetiae_contig787:18656..19031Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig787 18657..19031 +
1691683875.4151633-CDS-L-elsbetiae_contig787:18656..190311691683875.4151633-CDS-L-elsbetiae_contig787:18656..19031Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig787 18657..19031 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig787.16824.1

>prot_L-elsbetiae_contig787.16824.1 ID=prot_L-elsbetiae_contig787.16824.1|Name=mRNA_L-elsbetiae_contig787.16824.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=241bp
LPQEIDVLHAQGPAGQQLQGALQPPPPQQQQQQQQTKRFQDPPNSQGALL
QSTSRGASYGQQPQHPPGATAGASVAWGVPPQQWLPQQQHQQQQQQQQQW
AQQRRFFATINSIPQMQQHEQQQQQQQQQQFTGAVSPKVVSGPATQHWAM
SFTDDDEGGSSAPSSPANIRNLRKSGSAPVSLPVGNLASTGPAVQPGSGG
VGRNSFDLLQAIPEGGRAATRTPDMTQRPFAAGATAGAGTG
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mRNA from alignment at L-elsbetiae_contig787:17208..19033+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig787.16824.1 ID=mRNA_L-elsbetiae_contig787.16824.1|Name=mRNA_L-elsbetiae_contig787.16824.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1826bp|location=Sequence derived from alignment at L-elsbetiae_contig787:17208..19033+ (Laminarionema elsbetiae ELsaHSoW15)
CTGCCCCAGGAGATCGACGTGCTGCACGCGCAAGGGCCGGCGGGACAGCA
GTTGCAAGGCGCACTGCAACCGCCGCCGCCGCAGCAGCAGCAGCAGCAGC
AGCAGACCAAGCGGTTTCAAGACCCGCCGAATTCTCAGGCGAGTAACAAT
GCTCCAAGCTGGGCAAATCACGTGTGTGGCTTCCAGCAGGTGGTAAATAT
TGAATACTCGTATTTAAAACGAAGCAACTAAAACTCCCGTTCTTCCCCCC
CCCCCCCCCACCCGTTCCCTTCCTCGATACGATGTGGAGCTTGTTCCGTC
GGTCTCAATGGAAGACGCTACATACACGCAGCACGCAACATTCCCCTAAA
TAAATGTACGACATACCTAAGTACGTAAGTACGCTTTGGCTGCGAAATGA
CGAGCCTGCAAAGCCGGAGAGTCTTGTGAAGCCAAACCACATAGCGAAAG
TCGAATCACAATGCCCCATCCAGATGCCAAAGTGACTTCTACCCGGAAGG
CGAACAGTGAAGGGACAGGAAACAGAGATACGCCAAAAAACTAGCTCTTC
TGCTTCGAGTATGTACGTTGATACACAACAGCCGCGCAGTGCAATGCTGG
GAGCTTCTCTTGTATGAGTATTTCAGTTGTCGAAATACTACTTGTGGCAA
CAGGAACTCCCTTGCCGGCCCAACCTTTCCCGTCCCGCTCCCTTTCCTCC
CACCATTTCTCTCCCTCGTCCATGAAGCCATCCCCCGCTCCTGCTCCCAT
CTCAATAGTCTGAACCGCGCTTGCAGATAGATGCATCCACAGTAGCAGTG
CACCGCCAACGTTAAACCGGGGTGCGCTTGCTGGTCGAGTCCCTGTTGAG
GGAAGAAATCGACCCCCCCCCTTCAAGCAAAACCGAATAACCAAACCCTG
GTACCCCCGCTATACTGAACGACTTAGGGAGCTCTTTTGCAGTCTACCTC
GCGCGGTGCGTCCTACGGGCAGCAGCCTCAGCATCCACCGGGGGCAACAG
CGGGTGCGTCCGTTGCGTGGGGTGTACCGCCACAACAGTGGCTGCCGCAG
CAACAGCACCAGCAGCAACAGCAGCAGCAGCAGCAGTGGGCGCAGCAACG
CCGCTTTTTTGCTACGATTAACAGCATTCCCCAAATGGTGAGGCCCACAA
CGACGCGGTGAACGCACTAGTTCGCTCGCTCTCGCAAAACGTGACGCGAG
ATCGAGGCCTCTGAGACCAAAAAAGCGCAGACAACGACAAATTTTGCCCA
TTTCTTGACCCTCCCTCTCTCGGAGTGCAACGTGACGGGAGAGCTGCCTG
TGCGGTACTGAATACATGGAATAGACAACAGTGGCACGTGGACCGCTGGT
CCGGTCCGCAGCTTTGACAGCTCGAATTTTCATGAAAGCAAATAAATGCT
GTCCTCGGCCCGTTTCACCGCCTCTCCCCACCTGTCGTGGCCACCGCAGC
AACAACACGAACAGCAGCAGCAGCAGCAGCAGCAGCAGCAATTCACAGGC
GCGGTATCGCCAAAGGTGGTGTCCGGGCCCGCGACGCAGCACTGGGCAAT
GTCCTTCACAGACGACGACGAGGGCGGTTCATCGGCGCCGTCTTCTCCGG
CCAACATCCGAAACCTACGCAAGTCCGGGTCTGCGCCGGTCTCGCTGCCG
GTTGGCAACTTGGCCTCAACGGGGCCGGCGGTTCAACCCGGGAGCGGCGG
GGTCGGCAGAAATTCTTTCGACTTGCTGCAGGCCATTCCTGAAGGTGGCC
GAGCCGCCACGCGCACACCTGACATGACCCAGCGGCCGTTTGCGGCTGGG
GCTACGGCAGGTGCAGGAACAGGAGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig787:17208..19033+

>mRNA_L-elsbetiae_contig787.16824.1 ID=mRNA_L-elsbetiae_contig787.16824.1|Name=mRNA_L-elsbetiae_contig787.16824.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1446bp|location=Sequence derived from alignment at L-elsbetiae_contig787:17208..19033+ (Laminarionema elsbetiae ELsaHSoW15)
CTGCCCCAGGAGATCGACGTGCTGCACGCGCAAGGGCCGGCGGGACAGCA
GTTGCAAGGCGCACTGCAACCGCCGCCGCCGCAGCAGCAGCAGCAGCAGC
AGCAGACCAAGCGGTTTCAAGACCCGCCGAATTCTCAGCTGCCCCAGGAG
ATCGACGTGCTGCACGCGCAAGGGCCGGCGGGACAGCAGTTGCAAGGCGC
ACTGCAACCGCCGCCGCCGCAGCAGCAGCAGCAGCAGCAGCAGACCAAGC
GGTTTCAAGACCCGCCGAATTCTCAGGGAGCTCTTTTGCAGTCTACCTCG
CGCGGTGCGTCCTACGGGCAGCAGCCTCAGCATCCACCGGGGGCAACAGC
GGGTGCGTCCGTTGCGTGGGGTGTACCGCCACAACAGTGGCTGCCGCAGC
AACAGCACCAGCAGCAACAGCAGCAGCAGCAGCAGTGGGCGCAGCAACGC
CGCTTTTTTGCTACGATTAACAGCATTCCCCAAATGGGAGCTCTTTTGCA
GTCTACCTCGCGCGGTGCGTCCTACGGGCAGCAGCCTCAGCATCCACCGG
GGGCAACAGCGGGTGCGTCCGTTGCGTGGGGTGTACCGCCACAACAGTGG
CTGCCGCAGCAACAGCACCAGCAGCAACAGCAGCAGCAGCAGCAGTGGGC
GCAGCAACGCCGCTTTTTTGCTACGATTAACAGCATTCCCCAAATGCAAC
AACACGAACAGCAGCAGCAGCAGCAGCAGCAGCAGCAATTCACAGGCGCG
GTATCGCCAAAGGTGGTGTCCGGGCCCGCGACGCAGCACTGGGCAATGTC
CTTCACAGACGACGACGAGGGCGGTTCATCGGCGCCGTCTTCTCCGGCCA
ACATCCGAAACCTACGCAAGTCCGGGTCTGCGCCGGTCTCGCTGCCGGTT
GGCAACTTGGCCTCAACGGGGCCGGCGGTTCAACCCGGGAGCGGCGGGGT
CGGCAGAAATTCTTTCGACTTGCTGCAGGCCATTCCTGAAGGTGGCCGAG
CCGCCACGCGCACACCTGACATGACCCAGCGGCCGTTTGCGGCTGGGGCT
ACGGCAGGTGCAGGAACAGGACAACAACACGAACAGCAGCAGCAGCAGCA
GCAGCAGCAGCAATTCACAGGCGCGGTATCGCCAAAGGTGGTGTCCGGGC
CCGCGACGCAGCACTGGGCAATGTCCTTCACAGACGACGACGAGGGCGGT
TCATCGGCGCCGTCTTCTCCGGCCAACATCCGAAACCTACGCAAGTCCGG
GTCTGCGCCGGTCTCGCTGCCGGTTGGCAACTTGGCCTCAACGGGGCCGG
CGGTTCAACCCGGGAGCGGCGGGGTCGGCAGAAATTCTTTCGACTTGCTG
CAGGCCATTCCTGAAGGTGGCCGAGCCGCCACGCGCACACCTGACATGAC
CCAGCGGCCGTTTGCGGCTGGGGCTACGGCAGGTGCAGGAACAGGA
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