mRNA_L-elsbetiae_contig7868.16822.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
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Overview
Homology
BLAST of mRNA_L-elsbetiae_contig7868.16822.1 vs. uniprot
Match: D7FNU7_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNU7_ECTSI) HSP 1 Score: 679 bits (1752), Expect = 1.920e-221 Identity = 514/1188 (43.27%), Postives = 646/1188 (54.38%), Query Frame = 1
Query: 13 ESLQGLSSLMALGYLNLSSNLLPLEGLRPLAHAHILELFLGSTRPGQERRRTLGLLPNVWVLDDEYVTARERRAAEDDYSH---GAGERNDHLLRTWNDASLLRSPGKLRDNNGGGRRINNRKQLRIS----HQRPQQIKELGGRSGFGSLEIQGRQVREFYENVVWKLPSRAVILLTRSPACPDLVAWQIHPAEQRTYDQMEPLLARANMSHRDLHPRP-SAGNDVGGDGRKVKLARVSPKPPHPCSPSTPGLEFDPSPTAGVTGEPRGDADNHQPRDALQS---PENGFWSANIRRPKAGERVQVLHDTWSVIVTLHPETFSILVAPFEGMKLPPYFGDSYVDSRDLCYDPRGWWRHAPALFTAPPTGTGRLHRLARGISATGLPWGAGSLNEPLVEGNNDE-------RPSSGGGRETAGEWS-----------IQDYSLPYREAAA--CENRAPTLARRPSTTTVSAAYRTAVSASSDPSLTPPVLRQDVRPGNNVVGVFSAEGSWDPVFVMAPPRLVGLQNHAAARERGRRRARQVAWRRINRPEASLAPRPMMPRCSSLPASAETSGTHLRFLEESVS---IPGLPDDRSCPRLAAVAPSHGG-SSGHVWSPVSTTVSVPPIISPGHSHSAAEEQRTVLSSGDAWLELQREMGSLKADNRMVLHGNRGGSGGGQE--ISAHPLRISGPAESEMSKSLAEISTVCAEATTDLLAKTLSLRLDNPLPMWDGGKSEDKPTTVFELTQIGGEPERLAGR------STVATHTSSLRGGKPTAANSRTEMHQRGTAGLK-RGAEGGGRGNSGFPGNTKPSRSQGRVLRDGGSATPPTTTTTGRTWKPNVHRPLEWFPVPARQVLLVDPNDVKATAAGVAEEARAARTAGRSAEPRPSSRVDLRPIDEGAVGDRGSG------------NNGDAKSGGTEDCSEHRREGRGGGPQDREAKKTEGGK-QRGSAKPTTPQEGHGYTIQESSKPSEIVLSARSTVPSAASLVDLSCSP--------RPT-GTKAGARATARARLTSGSYRA--RPHTSASRAWGRYKRDAPSGGVLARKYSAAMNFMVSPSQTKARVESLGGNRRTPEVSHREMSCVSLSALGGGPVIRLPVRATATASHATSAAQKEKTTAVVAPGPPREMRHPSREASTSQPQRAAISGWEGEEASVTT 3372
ESL GLS +MALGYLNLSSN +PL+GLRPL+ AHILELFLGS R +ERRRTL +LPN+WVLDDE+VTA ERR A+D++ H G G +DHLL TWN +S R K RD N + + + H PQ+ KE +SGF LE QG ++FYENVVWK+PSRAVIL TRSPACP+LVAWQ P +Q YDQMEPLLARA +SH DLHP S G +V GD R+ L S P SP TP FDP P G+ RG Q D++ S P+ GFW A+IRRP++GERVQVL DTWSVIVT+ PE F + VAPFEG++ Y G++ +DSRDL YDPRGWW H PA+ G RLHR +RG+SA+GLP GAGSLNE L EG DE RPS GG RE + S Q S P AAA ++ +P ++ PS VLR P NNVV VFSAEGSWDPVFV+APPRLVGLQN AAR G RRARQVAW RI+ PE S+APRP MPRCSSL T R L++S S +P L ++ RLAAVAPSHGG +S + S +SVP I + S AA++ T ++ +AWLELQREMGSLKADNRM++ + G I+ + S PA S ++KSLAE STV A+ATTD+LAKTL+ LD+PL W GG + TVFELTQ+GG PE+ AG S TH ++ N + E+ + R AEG +T S + ++T + TT R WKPN RPLEWFPVP RQV VDPNDV A A AA GR E S+ ++ P +GA G + + ++ G ED E + GR GG Q +E + E GK Q G+ P+T RS P+AA L + SP RPT T++ ++R+ ++G++RA R + A + S GV+ +S + + P ++R G +RR E CV S + G + VR + Q+ T V P + RHP+R Q QR ISGWEG E + +T
Sbjct: 48 ESLGGLSRVMALGYLNLSSNFIPLDGLRPLSRAHILELFLGSGRSSKERRRTLCVLPNLWVLDDEFVTAEERRIADDNHQHNGRGWGATSDHLLPTWNQSSPKRD--KTRDKNSSTAIASPSSIVVVKDAGRHHPPQKQKESACKSGFVDLETQGHLTQDFYENVVWKIPSRAVILFTRSPACPELVAWQTSPMDQPAYDQMEPLLARAKLSHDDLHPTSVSFGGEVDGDHRRDGLGGGSVVPSRHRSPRTPCFHFDPLPADDDRGD-RGGVHATQLADSVDSLPLPDAGFWRASIRRPRSGERVQVLCDTWSVIVTVDPEAFLVTVAPFEGIQTSAYRGEARIDSRDLYYDPRGWWSHVPAIAGNATAGPSRLHRQSRGLSASGLPRGAGSLNEALEEGKGDEPSQILNGRPS-GGDREVVVDSSRNYTDLLLPSAAQQLSQPASSAAAPVSKSLSPAVSTEPSXXXXXXXXXXXXXXXXXXXXXXSVLRSHRCPNNNVVDVFSAEGSWDPVFVVAPPRLVGLQNQTAARRMGGRRARQVAWYRIDGPEVSVAPRPTMPRCSSLRMPFRVGDTPSRHLQQSASTSSVPRLSSKQAPLRLAAVAPSHGGGNSVYARFSQSRGLSVPSINTNSCSMPAAKKLPT--AADEAWLELQREMGSLKADNRMLIRDSSQGXXXXXXECINTSTISASSPAMSVVTKSLAENSTVGAQATTDMLAKTLTRTLDSPLSAWKGGNTVSATATVFELTQVGGRPEKDAGECASSPTSVSLTHETTRSTDNWRVDNQQQEVSPPEECSKQVRVAEG-------DKPDTAASSHRXXXXPXXXNSTAASATT--RKWKPNAFRPLEWFPVPGRQVFRVDPNDVNA--------APAAEPVGRPVESGTSNTPNVPPEGQGAEGXXXXXXXXXXXXXXXXCGSSERQAVGGEDTVEQDKAGRRGG-QAKEKIRIESGKGQPGNGSPST----------------------RSPFPTAAVLNNGLLSPATNRDMGVRPTIWTRSRRARSSRSLHSAGAFRALDRQKPNGLLADALRPKSPDSLGVIT-SFSTQVRLEIDPHDVRSR----GFHRREEEHCRETRQCVEASDVSSGLAVTPGVRPMVSGPTG----QRPARTKAVVPHWQHDKRHPARR--QPQCQRLTISGWEGAEGAGST 1178
BLAST of mRNA_L-elsbetiae_contig7868.16822.1 vs. uniprot
Match: A0A6H5J9X4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9X4_9PHAE) HSP 1 Score: 642 bits (1657), Expect = 1.430e-206 Identity = 443/985 (44.97%), Postives = 538/985 (54.62%), Query Frame = 1
Query: 13 ESLQGLSSLMALGYLNLSSNLLPLEGLRPLAHAHILELFLGSTRPGQERRRTLGLLPNVWVLDDEYVTARERRAAEDDYSH---GAGERNDHLLRTWNDASLLRSPGKLRDNNGGGRRINNRKQLRIS----HQRPQQIKELGGRSGFGSLEIQGRQVREFYENVVWKLPSR--------------------------------------------------------------------------AVILLTRSPACPDLVAWQIHPAEQRTYDQMEPLLARANMSHRDLHPRP------------------------SAGNDVGGDGRKVKLARVSPKPPHPCSPSTPGLEFDPSPTAGVTGEPRGDADNHQPR--DALQSPENGFWSANIRRPKAGERVQVLHDTWSVIVTLHPETFSILVAPFEGMKLPPYFGDSYVDSRDLCYDPRGWWRHAPALFTAPPTGTGRLHRLARGISATGLPWGAGSLNEPLVEGNNDERPSSGGGRETAGEWS-IQDYSLPYREAA-ACENRAPTLARRPSTTTVSAAYRTAVSASSDPSLTPPVLRQDVRPGNNVVGVFSAEGSWDPVFVMAPPRLVGLQNHAAARERGRRRARQVAWRRINRPEASLAPRPMMPRCSSLPASAETSGTHLRFLEESVS---IPGLPDDRSCPRLAAVAPSHGG-SSGHVWSPVSTTVSVPPIISPGHSHSAAEEQRTVLSSGDAWLELQREMGSLKADNRMVLH-GNRGGSG----GGQEISAHPLRISGPAESEMSKSLAEISTVCAEATTDLLAKTLSLRLDNPLPMWDGGKSEDKPTTVFELTQIGGEPERLAGRSTVATHTSSLRGGKPTAANS-RTEMHQRGTAGLKRGAEGGGRGNSGFPGNTKPSRSQGRVLRDGGSATPPTTTTTGRTWKPNVHRPLEWFPVPARQVLLVDPNDVKATAAGVAEEARAARTAGRSAEPRPSSRVDLRPIDEGA 2610
ESL GLS +MALGYLNLSSN +PL+GLRPLA AHILEL LGS R +ERRRTL LPN+WVLDDE+VTA ERR A+D + H G G +DHLL TWN S R K RD +G + + + H Q+ K +SGF LE QG ++FYENVVWK+PSR AVIL TRSPACP+LVAW+ P +QR YDQMEPLLARA +SH DLHP S G +V GD R+ L S P SP TP DP P +G+ G Q D+ P+ GFW ANIRRP++GERVQVL TWSVIVT+ PE F + VAPFE ++ Y GD +DSRDL YDPRGWW H PAL G RLHR +RG+SA+GLP GAGSLNE L EG+ DE GR + G+ I D S Y +A EN +P ++ PST A A +A S+ S TP VLR + P NNVV VFSAEGSWDPVFV+APPRLVGLQN AA G RRARQVAW I+ E S+APRP MPRC+SL T R L++S S IP L + RLAAV PSHGG +S + S +SVP I + S AAE+ T S+ +AWLELQREMGSLKADNRM++ +RGG G+ I+ + S PA S ++KSLAE STV A+ATT++LAKTL+ LD+PL W GG TVFELTQ+ G PE+ AG + ++SL + + R + Q+ + + ++ G P T S + R+ DG S TT R WKPN RPLEWFPVP +QV LVDPNDV A A AA GR E S+ ++ P D+GA
Sbjct: 48 ESLGGLSRVMALGYLNLSSNFIPLDGLRPLARAHILELSLGSGRSSEERRRTLCALPNLWVLDDEFVTAEERRIADDSHQHNGSGGGATSDHLLPTWNQPSPKRD--KTRDKDGSTAIASPSSIVVVKDVGRHHPSQKQKASAYKSGFVDLETQGHLTQDFYENVVWKIPSRQQRDLLEALPPIITGIDVDHVFESWEDSSGHARGSNQEGEAAWGADDEAGATGLGSIEANVPPRGIGLTRLCRRAVILFTRSPACPELVAWKTSPMDQRAYDQMEPLLARAKLSHDDLHPTSVVAIGAIGTFPGFPIATLCSLPSQSFGGEVHGDHRRDGLGWGSVVPSRHRSPRTPCFHLDPLPADDDSGDRGGVCATQQAASVDSSSPPDAGFWRANIRRPRSGERVQVLCGTWSVIVTVDPEAFLVTVAPFESIQSSAYRGDVRIDSRDLYYDPRGWWCHVPALAGNATAGPSRLHRQSRGLSASGLPRGAGSLNEALEEGDGDEPSQILNGRPSGGDREVIVDSSRNYTGSAPVSENFSPAVSTEPSTANGLTASSNAAAAPSNLSPTPSVLRIHLCPKNNVVDVFSAEGSWDPVFVVAPPRLVGLQNQTAALRMGGRRARQVAWYHIDGSEVSVAPRPTMPRCTSLTMPFRVGDTPPRQLQQSASTSSIPRLSSKHAHLRLAAVVPSHGGDNSVYARFSQSRGLSVPSINTSSCSRPAAEKVPT--SADEAWLELQREMGSLKADNRMLVRDSSRGGXXXXXXSGECINTSTISASSPAMSVVTKSLAENSTVGAQATTNMLAKTLTRTLDSPLSAWKGGNPVSATATVFELTQVDGRPEKDAGEGASSPSSASLAHETTRSTDIWRVDNQQQEVSPPEDCSKQVRMGEGDKPDATASSHRRRRIPDDGNSTAASATT---RKWKPNASRPLEWFPVPGKQVFLVDPNDVMA--------APAAEPVGRPVESDTSNTSNVPPEDQGA 1017
BLAST of mRNA_L-elsbetiae_contig7868.16822.1 vs. uniprot
Match: A0A7S3YB50_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YB50_HETAK) HSP 1 Score: 56.2 bits (134), Expect = 1.870e-5 Identity = 32/80 (40.00%), Postives = 46/80 (57.50%), Query Frame = 1
Query: 13 ESLQGLSSLMALGYLNLSSNLLPLEGLRPLAHAHILELFLGST-------RPGQERRRTLGLLPNVWVLDDEYVTARERR 231
E+L GL S +ALG LNLS N L +R LA +ILE + P Q R++ L +PN+WVLD +Y++ ++R
Sbjct: 31 ENLDGLESFLALGTLNLSHNRLIFREVRKLAALNILEAYFEGNPELTRERNPHQYRKKVLLSVPNLWVLDGDYISLNQKR 110 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7868.16822.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig7868.16822.1 >prot_L-elsbetiae_contig7868.16822.1 ID=prot_L-elsbetiae_contig7868.16822.1|Name=mRNA_L-elsbetiae_contig7868.16822.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=1124bp MSKQESLQGLSSLMALGYLNLSSNLLPLEGLRPLAHAHILELFLGSTRPGback to top mRNA from alignment at L-elsbetiae_contig7868:966..8792- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig7868.16822.1 ID=mRNA_L-elsbetiae_contig7868.16822.1|Name=mRNA_L-elsbetiae_contig7868.16822.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=7827bp|location=Sequence derived from alignment at L-elsbetiae_contig7868:966..8792- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig7868:966..8792- >mRNA_L-elsbetiae_contig7868.16822.1 ID=mRNA_L-elsbetiae_contig7868.16822.1|Name=mRNA_L-elsbetiae_contig7868.16822.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=6744bp|location=Sequence derived from alignment at L-elsbetiae_contig7868:966..8792- (Laminarionema elsbetiae ELsaHSoW15)back to top |