mRNA_L-elsbetiae_contig7862.16814.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7862.16814.1
Unique NamemRNA_L-elsbetiae_contig7862.16814.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7862.16814.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7862contigL-elsbetiae_contig7862:3465..8513 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons6
Model size987
Cds size654
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816869.7517035-CDS-L-elsbetiae_contig7862:3464..34941622816869.7517035-CDS-L-elsbetiae_contig7862:3464..3494Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7862 3465..3494 -
1691683874.874864-CDS-L-elsbetiae_contig7862:3464..34941691683874.874864-CDS-L-elsbetiae_contig7862:3464..3494Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7862 3465..3494 -
1622816869.763136-CDS-L-elsbetiae_contig7862:4248..43621622816869.763136-CDS-L-elsbetiae_contig7862:4248..4362Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7862 4249..4362 -
1691683874.88456-CDS-L-elsbetiae_contig7862:4248..43621691683874.88456-CDS-L-elsbetiae_contig7862:4248..4362Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7862 4249..4362 -
1622816869.773061-CDS-L-elsbetiae_contig7862:4557..46131622816869.773061-CDS-L-elsbetiae_contig7862:4557..4613Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7862 4558..4613 -
1691683874.8937654-CDS-L-elsbetiae_contig7862:4557..46131691683874.8937654-CDS-L-elsbetiae_contig7862:4557..4613Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7862 4558..4613 -
1622816869.7840042-CDS-L-elsbetiae_contig7862:4781..48221622816869.7840042-CDS-L-elsbetiae_contig7862:4781..4822Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7862 4782..4822 -
1691683874.9030857-CDS-L-elsbetiae_contig7862:4781..48221691683874.9030857-CDS-L-elsbetiae_contig7862:4781..4822Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7862 4782..4822 -
1622816869.7949564-CDS-L-elsbetiae_contig7862:5020..54331622816869.7949564-CDS-L-elsbetiae_contig7862:5020..5433Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7862 5021..5433 -
1691683874.9124146-CDS-L-elsbetiae_contig7862:5020..54331691683874.9124146-CDS-L-elsbetiae_contig7862:5020..5433Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7862 5021..5433 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816869.806762-UTR-L-elsbetiae_contig7862:5433..54611622816869.806762-UTR-L-elsbetiae_contig7862:5433..5461Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7862 5434..5461 -
1691683874.925234-UTR-L-elsbetiae_contig7862:5433..54611691683874.925234-UTR-L-elsbetiae_contig7862:5433..5461Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7862 5434..5461 -
1622816869.8183825-UTR-L-elsbetiae_contig7862:8210..85131622816869.8183825-UTR-L-elsbetiae_contig7862:8210..8513Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7862 8211..8513 -
1691683874.93683-UTR-L-elsbetiae_contig7862:8210..85131691683874.93683-UTR-L-elsbetiae_contig7862:8210..8513Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7862 8211..8513 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7862.16814.1prot_L-elsbetiae_contig7862.16814.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7862 3465..5433 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7862.16814.1

>prot_L-elsbetiae_contig7862.16814.1 ID=prot_L-elsbetiae_contig7862.16814.1|Name=mRNA_L-elsbetiae_contig7862.16814.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=218bp
MAAARKHLTDTSEKLRVSVSDLKAIDGDIAALTAGVGSLSLSEAASRVKE
AAERATLGAQKVLKAAKAAETAATSAAAAVEAAQSAKEAAAAKAAAAAKA
AREAEAAASKAAEEAEAAAAAAAAWEVAIKPPPPLEHMPLPRNDDVNNKK
QGAGPSVRGAVANGIDVSVKADETNTPEEEEEEKQHDTLLDLGRGAGDTV
LERQEGDEVESEEGEGTE
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mRNA from alignment at L-elsbetiae_contig7862:3465..8513-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7862.16814.1 ID=mRNA_L-elsbetiae_contig7862.16814.1|Name=mRNA_L-elsbetiae_contig7862.16814.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=5049bp|location=Sequence derived from alignment at L-elsbetiae_contig7862:3465..8513- (Laminarionema elsbetiae ELsaHSoW15)
AGATCCTCCATTCGTCCTGAACGCTGATTGGCTCGTGGACTACCAGCCAG
TGTTTTGGTCCCGGGTTATTGACTGAGGCGTTGTTGTGTATTTGCATCGA
GAGAAGCATGCGTCAAAAGGAGCGCGAAAGGGAGAGGCCGAGGAGAGAGC
GTGGAGAGAACGGGGGAACGAGTACAAAGGCGATAAAGTATTGGGTGGTA
GGTACAGCCCTTTGTTTGGATCGTGCGCGACTCGCAGCGCGACAGACGGC
AGGCAGGAGGTGTCTGCCCCACCGATAGCAGTCTACACGCCGTCTTTCTA
GAGGTGCGCGTGTGTGCAGAGTGCAGGTTTCCACACGCTACGATCCGTAC
CCAGGCAACGTGCTCACAAAAGCGGGGCTATTTACTCTTGCTTGGTGGTC
TGTGTGAAAGGGTCTCCAGGGTGAGGTTGGTCGCATACGGAACTTGGTGG
CGGCCAGCTGATGGTGTACATAGTGGCCAAACCAGCCGCGCGCATGCACT
CGAACGGTCAACCCTAGGTGCGGTTCGTAGTACGAGAGACGGTGGTTGCA
TTCCCCACACACGCACGCTGATTGAACCGTGTTTATTTCCTGATTGTTGA
ATTATTACCTTCGTGTACTGCTGGCCTCCTTTCGTCCGTTCGGCTTCGCC
ACTGCTTTGTCTCCGTCCCCTGGGTATGTGAGCGTCAGCGGGAACAACCT
ACAACCAACCTGTGAATAAAGCCTAGAATGGTAAACTACTTTGGCGTGTT
TTTTTGTTTGATAGACTATACTTGTGGTTGGTGGCATTCGGAGCCCCACA
GTCGGATACGGACTCCTCGTAACTGCATTAACCCTTCAGTCCCCTAGGCT
GGTGGAGCCGATCTGCTCGACTAGCCCGCGCGCGCACACTAGATCCCGCC
GCATATCAAGGGGGCGCACACGGACATGCACATTTTTTAGTGCGTAGAGT
TTCCGCGCTCGAGCTAATCTCCCACAGGCGTCATGGCGCGGGGCCGCGAC
AGGCTAGTGACGTTGGTTAGACATGTCGAAGGGTTATTCGGCCAAAATTG
GTTCACCGCAAGCTCTCTCTATCCTGTGTTTTCTCGATCCCGACCAGCCC
ACACCCCTCTATCTCCCAGTCACACCAAAATGCCCAATTTTGATGCGGTG
AAGAGTATTTGGCTCATATGCACTTCTTCTGTACTTTTCCCGAGCGGCTC
CACAGCAGTGACACGCGGATTATATCAAGGCTGTGCCCCAAATATGGGCT
GCAACCCCTTTCGTACGCTTGCTTACGTGCTACAGCAGGCTGTGTGTGCG
TGTCCGCGTGTGGCGGAGCGTGTGCGTTTTCTGCTGTACAACTCCGTGCA
TGTTGGTTTGGAGATTTTTGCATGTCATCCCCGCCCCCAATAGACCGGGC
GTTTCAAAAACAAATGCCCAATTTTATGCCCAAAAAAAGCCCTGAAGGGA
CAGAAGGGTTAAGGGGGTGCTGACAACAGTGGTTAAGCAGTTTCACACTA
AAATCAAGATAGTAAGGCCGAGTATAACGAAAACCAATTTCCCGTCGAAA
GTTAAGCAGTTTCGGGCATGGAACCACTAGAGCTAACCATGGAGAGGCCA
CGTGTGTATTGGCGCGTTCAGATATGCTGCTGGAGCGGAGATATCGAAGG
TCGCAGCAGTCGCTGGACTGTCCACAAATTTGACCGACAACAAACGTCTG
TATGGCTGCGCTTGCCGCCACGGGCCGTAACTGCCTGAACTGCGGGTCCT
CAGCAGTAGCTGGTGCGTGTTTGCTTCTTGCACTCGCGACGTAAAATGAG
ATATATACTAGAACCCCTGAAAAAATTAGAGCAAGCTGCGACCTGTGTAA
GGAGTATGGTTTGTGCTGAAAGGTTGTAACTCGGTTGAGCTCAGCCAAAA
AAAAAGGCTGGCGGCTGATAATTTATCCCGCCTGCGTGGACTCCGGTGAC
CATTTTTATTGCGCGGAGCCCCCTGCAACGCGGGTGGTGTTGGAGACCAA
ATCCCCAGTTGACCCCCCCCGCCCCCCGGCGCATCCCACTCGTCAGTTGA
CCCCCCGTCTGCTCTCTCGAGCCTCCTCTCCCTTTTTTTTTGTCCGCGTC
CGCGGATTCGCGTGAACACCATAGCAGCGCGCACTCGGCGCAGGGTAAAA
CCATACCTCTAGAGAGTTGGCCCGACACCGGTAGTGACACGTGCAGTGGG
ATAAGACTGATGGATAGTATCCGCGATGAATACGTGGAGCAAAGCCGCTC
GATTGGTTTTGCTTTAGAGCGGAGAGCGACGACAGCCTTCAAGGGGACGG
GGTCGTTATTCAACGTTTATTGCACTTTACAGAGCGAGGAGGTGGCGCGG
CGTGAAATGAAACAGAGAGCATTCGATCGATCTTGCATACAGCCTTCACG
AAACGCCTTGGTGATGGTGATGCGTGCTGAGCTCCTCGCACAAGTTGAAA
AAGCGAGGTTCCGCCACGAGCAGATCCAAACACGACTTTTTGCACGTCAC
CTCGCGAGCTTGTCCCGGTGTACGACACAGGAAGTACGAACAGGTCTGCC
CTATTTTTCGCTTTCGTTCAAGCCCTTGGTAGACTATGTTACTTGACGCT
GCTATTTTCATATTTGATCCGTTATTTTCGTGGGCGCGTATGTTCGTGTG
TGTAACCAATACATACACACATTCACGTGCCATTCTTCTTCGGTACAGCT
CACGGCAAGTATACTACTCTAGAAGTACAACAGCAGGACGGCTGGGGTGA
CCAATCAGTTGTGTTGCTCTGGCGGTGCTCTCATGACAGTCATGCCAGCT
TGGTAAGATTATGTTGCAGTTTGCACAGAGGTCGATTTCTGCTTAAATGA
CGGCATCAGGAGCATGCCGCTGTGCAGCGATCATGTGAAGTGGTACGCGA
CTAACGCCAGCAGTAGAGCCGCCCAACCTTCGTTATAAATTTTAATTCTG
TGAGATCCACACTGCTGCTGGCAACCGTCCTCCGACGCTGCCGCTCTCCA
TCTCTCCGCCCCCCCCCCCCCCCCCCCCCCCGCCTGCACGGTGCCAGAAC
AGATCTTACTTCCTGAAAACAGGTGTGGGGATGGCGGCAGCAAGGAAACA
CCTGACAGACACATCGGAGAAGCTCAGAGTGTCTGTCTCTGACCTCAAAG
CCATCGATGGAGACATAGCGGCTCTTACGGCCGGTGTGGGCAGCCTGTCT
TTGTCGGAAGCGGCTTCGAGGGTAAAAGAAGCAGCTGAAAGGGCGACATT
GGGGGCACAGAAGGTGTTGAAGGCGGCAAAAGCAGCGGAGACGGCAGCGA
CGAGTGCAGCAGCAGCGGTAGAAGCGGCCCAATCAGCGAAAGAGGCAGCT
GCGGCAAAGGCAGCGGCTGCAGCAAAGGCGGCTAGAGAAGCAGAGGCGGC
GGCGTCAAAAGCGGCCGAAGAAGCAGAGGCGGCGGCAGCAGCAGCGGCAG
CGTGGGAAGTGGCGATCAAGCCGCCGCCCCCCTTGGAGCACATGTGCGCA
TGCTCAGCTGGTACTGTCTGTGATGGCTGTCGCTTGTGCTTATGGGCTGA
AGTTGCTACGTGTCTCTGTGCATGTTTGCCGGTGAAGACAGGCACAAAGC
TGTCGTGATCTCGCTACTGCTTTGATCATCCCGTGGTGATTCCTGACCCC
TGCTGTGTTTTTTTTCGCGTTGTTTGCATCGTGCCATGCAGGCCGTTGCC
GAGGAACGATGACGTCAACAACAAGAAACAAGGTGCAGTAGGATACATGC
CGTGAGAAGGGGAGAACGCCTAATTTTCCGAATACGATGCACGATTCGAA
ATGATTGCATTTCTATTTCTTTCCCCGAGTAGCTGTACTTGCTTTGTTTA
AACCAACGAAATTGATTGAAATACACTTCGTATTTGTCGTACGCCTTCAG
GCGCGGGTCCGTCTGTTCGTGGAGCTGTCGCCAACGGCATCGACGTGTCA
GTCAAGGTAGGTGGACCGTCTGTGGTTGATTGGCAGCGCCCAAACTGTCG
TGCATAGTATGTCTTGCGTATTAATGCATGCTTGATGGTGTTTCGTTGAC
CGCAAACTTGAGAAGACAGTCGTTTATTGTACTATGTCAACCAGACATGC
CTTCCCGCTGTCGCGCATGCGATTTGTCTGCCCGCTGCTCCTGTGTTGTA
GGCCGATGAGACGAACACACCCGAAGAGGAAGAGGAAGAGAAACAACACG
ATACATTGCTTGACTTGGGAAGGGGGGCGGGTGACACCGTTCTGGAGAGG
CAAGAGGGAGATGAGGTGGGCGTGGTTGCTTGTTGCCTGGGAGTGGAATC
CCGGCTTCGATGAGGCACACTCTAGGGGAGTTTGCACCGGGTAGCGACAA
AACGGTTGCACAAGATTCTCCAAGTGAGTGGGATACTTCGAGTATGAGCC
TCGATGCTCCTTTCATTTGTTGAAGACCGTCGAAGTTGTTTCCTGTCTAG
CTTCTTTATCGGTCGATTGTGAGTTCGGAGGACGTGTTACACCATTTTAC
TTCAGTTTAAGCTTTTCGCAGTTAAGCTAGCAATACAAATGTCGTTGGCG
GCAGCCTTAGCTCAAGTGCAATGCCTCATGTATTTTCTATCAGTGCGATG
TCATAGTTTGGTTTGAGTGTTTTTACCACGGAGATTTGTCTCTGACACCC
CATTGCTGTCAATTGAAAATGAAATGCCCCCCCCCACCCCTTTCCGCCGG
CTTCGTCCTGTACGACATGATATCTATTCCGTGCTAGAAGAAACACGGTT
GTAAAACTAGTTTTCTCTGTTGAGCATGCGGTCTGGTTATTTATTTATTT
TGGTTCTCTATTAGCGTATTGTGTGCCGCCCGGCTCTCACCTCTGGTTGG
TACATCGTACCGAACAACCCATGGGCTTCGTGGCGTTTGTTTTTATGCGT
TCTGTATCGTGGTGCCCCTTGGCGCCCGCCCGCCTTGTTGGCCAGTGTCT
TTCGGCGACCTGTAACGGCAGGTTACGGTATTGCCGTCCAATCCATGGTT
TGTTGCTTTCCTTCGTCAGGTCGAATCGGAGGAGGGTGAAGGCACAGAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7862:3465..8513-

>mRNA_L-elsbetiae_contig7862.16814.1 ID=mRNA_L-elsbetiae_contig7862.16814.1|Name=mRNA_L-elsbetiae_contig7862.16814.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1308bp|location=Sequence derived from alignment at L-elsbetiae_contig7862:3465..8513- (Laminarionema elsbetiae ELsaHSoW15)
ATGGCGGCAGCAAGGAAACACCTGACAGACACATCGGAGAAGCTCAGAGT
GTCTGTCTCTGACCTCAAAGCCATCGATGGAGACATAGCGGCTCTTACGG
CCGGTGTGGGCAGCCTGTCTTTGTCGGAAGCGGCTTCGAGGGTAAAAGAA
GCAGCTGAAAGGGCGACATTGGGGGCACAGAAGGTGTTGAAGGCGGCAAA
AGCAGCGGAGACGGCAGCGACGAGTGCAGCAGCAGCGGTAGAAGCGGCCC
AATCAGCGAAAGAGGCAGCTGCGGCAAAGGCAGCGGCTGCAGCAAAGGCG
GCTAGAGAAGCAGAGGCGGCGGCGTCAAAAGCGGCCGAAGAAGCAGAGGC
GGCGGCAGCAGCAGCGGCAGCGTGGGAAGTGGCGATCAAGCCGCCGCCCC
CCTTGGAGCACATATGGCGGCAGCAAGGAAACACCTGACAGACACATCGG
AGAAGCTCAGAGTGTCTGTCTCTGACCTCAAAGCCATCGATGGAGACATA
GCGGCTCTTACGGCCGGTGTGGGCAGCCTGTCTTTGTCGGAAGCGGCTTC
GAGGGTAAAAGAAGCAGCTGAAAGGGCGACATTGGGGGCACAGAAGGTGT
TGAAGGCGGCAAAAGCAGCGGAGACGGCAGCGACGAGTGCAGCAGCAGCG
GTAGAAGCGGCCCAATCAGCGAAAGAGGCAGCTGCGGCAAAGGCAGCGGC
TGCAGCAAAGGCGGCTAGAGAAGCAGAGGCGGCGGCGTCAAAAGCGGCCG
AAGAAGCAGAGGCGGCGGCAGCAGCAGCGGCAGCGTGGGAAGTGGCGATC
AAGCCGCCGCCCCCCTTGGAGCACATGCCGTTGCCGAGGAACGATGACGT
CAACAACAAGAAACAAGGCCGTTGCCGAGGAACGATGACGTCAACAACAA
GAAACAAGGCGCGGGTCCGTCTGTTCGTGGAGCTGTCGCCAACGGCATCG
ACGTGTCAGTCAAGGCGCGGGTCCGTCTGTTCGTGGAGCTGTCGCCAACG
GCATCGACGTGTCAGTCAAGGCCGATGAGACGAACACACCCGAAGAGGAA
GAGGAAGAGAAACAACACGATACATTGCTTGACTTGGGAAGGGGGGCGGG
TGACACCGTTCTGGAGAGGCAAGAGGGAGATGAGGCCGATGAGACGAACA
CACCCGAAGAGGAAGAGGAAGAGAAACAACACGATACATTGCTTGACTTG
GGAAGGGGGGCGGGTGACACCGTTCTGGAGAGGCAAGAGGGAGATGAGGT
CGAATCGGAGGAGGGTGAAGGCACAGAGGTCGAATCGGAGGAGGGTGAAG
GCACAGAG
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