mRNA_L-elsbetiae_contig7860.16813.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7860.16813.1
Unique NamemRNA_L-elsbetiae_contig7860.16813.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig7860.16813.1 vs. uniprot
Match: D8LB42_ECTSI (Protein tyrosine kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB42_ECTSI)

HSP 1 Score: 70.5 bits (171), Expect = 2.030e-10
Identity = 63/105 (60.00%), Postives = 72/105 (68.57%), Query Frame = -2 
Query:  378 VPDRVDAPIAELMSRCWEGNPRGRPDFASILTALTEFASHQKHA-------GEDAALVAPAPXXXXXXXXXXXXXXXXXXXXMKAGKTAKSKAEAADLAKAAVEE 671
            VP RVD+P+A+LM +CW  + R RPDFASILTALT FA  Q+ A       G  AALV        XXXXXXXXXXXXXXXX  A K A++KAEAA+LA AAV E
Sbjct:  876 VPPRVDSPLADLMHKCWNESSRLRPDFASILTALTAFAGDQELARANGVEGGGAAALVE------AXXXXXXXXXXXXXXXXXXAVKIARAKAEAAELANAAVAE 974
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BLAST of mRNA_L-elsbetiae_contig7860.16813.1 vs. uniprot
Match: A0A6H5KJ74_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ74_9PHAE)

HSP 1 Score: 65.9 bits (159), Expect = 4.140e-9
Identity = 63/99 (63.64%), Postives = 71/99 (71.72%), Query Frame = -2 
Query:  378 VPDRVDAPIAELMSRCWEGNPRGRPDFASILTALTEFASHQKHAGEDAALVAPAPXXXXXXXXXXXXXXXXXXXXMK-AGKTAKSKAEAADLAKAAVEE 671
            VP RVDAP+A+LM +CW  + R RPDFASILTALT FA   + A  +      A XXXXXXXXXXXXXXXXXXXX   A K A++KAEAA LA AAV E
Sbjct:    2 VPPRVDAPLADLMHKCWNESSRLRPDFASILTALTAFAGDHELARANGVEGGGAXXXXXXXXXXXXXXXXXXXXXXXXAVKIARAKAEAAALANAAVAE 100
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7860.16813.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LB42_ECTSI2.030e-1060.00Protein tyrosine kinase n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KJ74_9PHAE4.140e-963.64Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7860contigL-elsbetiae_contig7860:7303..7974 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size674
Cds size552
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816869.709337-CDS-L-elsbetiae_contig7860:7302..78541622816869.709337-CDS-L-elsbetiae_contig7860:7302..7854Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7860 7303..7854 +
1691683874.8529854-CDS-L-elsbetiae_contig7860:7302..78541691683874.8529854-CDS-L-elsbetiae_contig7860:7302..7854Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7860 7303..7854 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816869.720751-UTR-L-elsbetiae_contig7860:7854..79741622816869.720751-UTR-L-elsbetiae_contig7860:7854..7974Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7860 7855..7974 +
1691683874.8623855-UTR-L-elsbetiae_contig7860:7854..79741691683874.8623855-UTR-L-elsbetiae_contig7860:7854..7974Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7860 7855..7974 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7860.16813.1prot_L-elsbetiae_contig7860.16813.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7860 7303..7854 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7860.16813.1

>prot_L-elsbetiae_contig7860.16813.1 ID=prot_L-elsbetiae_contig7860.16813.1|Name=mRNA_L-elsbetiae_contig7860.16813.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=184bp
LCCSLRLPTSPPPPPPPLPCRNKRDDEEEGGEPPLPCRSCAKYAAAALRC
CPDAPPCWPTGTRRGTPVRWSCSPLSLRSCCCWCCCASCRPSTAAAAAAA
APPASESLRRSLATAARVAVFRRLVNSSTAAFARSAASAFDLAVFPAFIA
AAADFLLPAPPPPPLEGGGGAGATSAASSPACF*
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mRNA from alignment at L-elsbetiae_contig7860:7303..7974+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7860.16813.1 ID=mRNA_L-elsbetiae_contig7860.16813.1|Name=mRNA_L-elsbetiae_contig7860.16813.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=672bp|location=Sequence derived from alignment at L-elsbetiae_contig7860:7303..7974+ (Laminarionema elsbetiae ELsaHSoW15)
CTCTGCTGTTCTCTTCGCCTTCCTACGTCTCCTCCTCCACCTCCTCCTCC
GCTACCCTGCCGTAACAAGCGCGACGACGAAGAAGAAGGAGGAGAGCCGC
CGCTGCCCTGCCGGAGCTGCGCAAAGTACGCGGCAGCGGCGCTGCGCTGC
TGCCCCGACGCCCCGCCCTGCTGGCCCACGGGGACGCGCCGCGGGACCCC
CGTCCGGTGGTCGTGTTCCCCGCTATCTCTTCGTTCTTGCTGTTGTTGGT
GCTGCTGCGCTTCTTGTCGCCCGTCTACCGCCGCCGCCGCGGCCGCCGCC
GCACCCCCGGCCTCAGAGTCTCTTCGCCGCAGCTTGGCCACCGCCGCACG
GGTGGCAGTGTTCCGCCGTCTGGTAAACTCCTCCACCGCGGCCTTCGCCA
GATCGGCCGCTTCCGCCTTCGACTTGGCCGTCTTCCCCGCCTTCATCGCC
GCCGCCGCGGATTTCCTGCTGCCAGCGCCGCCGCCGCCACCGCTGGAGGG
CGGCGGGGGAGCGGGGGCCACCAGCGCCGCGTCTTCGCCCGCGTGCTTCT
GATGGCTGGCGAACTCTGTGAGGGCCGTGAGGATCGACGCGAAGTCGGGC
CGACCTCGTGGGTTTCCTTCCCAGCACCTCGACATGAGCTCGGCGATCGG
CGCATCCACCCGGTCCGGGACC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7860:7303..7974+

>mRNA_L-elsbetiae_contig7860.16813.1 ID=mRNA_L-elsbetiae_contig7860.16813.1|Name=mRNA_L-elsbetiae_contig7860.16813.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1104bp|location=Sequence derived from alignment at L-elsbetiae_contig7860:7303..7974+ (Laminarionema elsbetiae ELsaHSoW15)
CTCTGCTGTTCTCTTCGCCTTCCTACGTCTCCTCCTCCACCTCCTCCTCC
GCTACCCTGCCGTAACAAGCGCGACGACGAAGAAGAAGGAGGAGAGCCGC
CGCTGCCCTGCCGGAGCTGCGCAAAGTACGCGGCAGCGGCGCTGCGCTGC
TGCCCCGACGCCCCGCCCTGCTGGCCCACGGGGACGCGCCGCGGGACCCC
CGTCCGGTGGTCGTGTTCCCCGCTATCTCTTCGTTCTTGCTGTTGTTGGT
GCTGCTGCGCTTCTTGTCGCCCGTCTACCGCCGCCGCCGCGGCCGCCGCC
GCACCCCCGGCCTCAGAGTCTCTTCGCCGCAGCTTGGCCACCGCCGCACG
GGTGGCAGTGTTCCGCCGTCTGGTAAACTCCTCCACCGCGGCCTTCGCCA
GATCGGCCGCTTCCGCCTTCGACTTGGCCGTCTTCCCCGCCTTCATCGCC
GCCGCCGCGGATTTCCTGCTGCCAGCGCCGCCGCCGCCACCGCTGGAGGG
CGGCGGGGGAGCGGGGGCCACCAGCGCCGCGTCTTCGCCCGCGTGCTTCT
GACTCTGCTGTTCTCTTCGCCTTCCTACGTCTCCTCCTCCACCTCCTCCT
CCGCTACCCTGCCGTAACAAGCGCGACGACGAAGAAGAAGGAGGAGAGCC
GCCGCTGCCCTGCCGGAGCTGCGCAAAGTACGCGGCAGCGGCGCTGCGCT
GCTGCCCCGACGCCCCGCCCTGCTGGCCCACGGGGACGCGCCGCGGGACC
CCCGTCCGGTGGTCGTGTTCCCCGCTATCTCTTCGTTCTTGCTGTTGTTG
GTGCTGCTGCGCTTCTTGTCGCCCGTCTACCGCCGCCGCCGCGGCCGCCG
CCGCACCCCCGGCCTCAGAGTCTCTTCGCCGCAGCTTGGCCACCGCCGCA
CGGGTGGCAGTGTTCCGCCGTCTGGTAAACTCCTCCACCGCGGCCTTCGC
CAGATCGGCCGCTTCCGCCTTCGACTTGGCCGTCTTCCCCGCCTTCATCG
CCGCCGCCGCGGATTTCCTGCTGCCAGCGCCGCCGCCGCCACCGCTGGAG
GGCGGCGGGGGAGCGGGGGCCACCAGCGCCGCGTCTTCGCCCGCGTGCTT
CTGA
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