mRNA_L-elsbetiae_contig7855.16811.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7855.16811.1
Unique NamemRNA_L-elsbetiae_contig7855.16811.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig7855.16811.1 vs. uniprot
Match: D7FK50_ECTSI (Putative methyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK50_ECTSI)

HSP 1 Score: 404 bits (1037), Expect = 5.530e-132
Identity = 222/376 (59.04%), Postives = 260/376 (69.15%), Query Frame = 1
Query:    1 FQRFLLTQCVWWGHPVTPSTGSIDYFLSLDVELDEGQDDYLEQMVRMDILNTADFIQVILARAPLILPRAQPQFSKQNFAVGCRCRQMDLDDSTEN--PELPSGSPSTRNDDSASTWSPAPDRPEILSTEPAAGSNKPASASNVTDLAGKALSRRAAAVEANTRSDPVGGEVWSNPLCSRIYLVLGRLFKLHPDFDAAIEGILAGDTNGCVVLIHETRDEEWTRVVWTRLRDVLVPKG------MCN--FDRLRIMHHWLYPQALRRATAVLDTFPYGGCLTVLEGLSSGVPVVTLPAKFIRGRFALAMYQQMGYSDLVADDVAEYVSIAVRLGVDQALRKEAVIRVQEACRESLHKHQQSAHEWAAFFVRAHRAA 1098
            F R    QCVWWGHPVTPSTGS+DYFLSLDVEL+ GQDDYLEQMVRMD++NTA F Q+    + L LP   P     N   G +      +   E+    LPS   S+ N D A     +    ++ + E  AG   PA+A+               A   +   D   GE  + P C   YLV+GRLFKLHPDFDAAIEGIL GD +GCV+LIHET+DEEWTRVVW+RLRDVL P+G      MC+  F RLRIMHHWLYPQALRRATAVLDTFPYGGCLTVLEGLS+GVPVVTLPAK++RGRFALAMYQQMGY++LVADDV EYVS+AV+LG D+  R++ V +V+ A RESLH+H QSA EWAAF VRAHR A
Sbjct:  318 FARLAPVQCVWWGHPVTPSTGSVDYFLSLDVELEGGQDDYLEQMVRMDVVNTAHFKQMAAWVSDLGLPSEPPGRRDNNRDKGPQSPLSFTNGGVESLSTSLPSTIKSSSNADMADVLQISVPYADLAAAE--AGPTTPATAATT-----------GVAARTHNEHDVTIGEQDAGPSCRHKYLVMGRLFKLHPDFDAAIEGILEGDKDGCVILIHETKDEEWTRVVWSRLRDVLAPRGRTPSTCMCDGLFGRLRIMHHWLYPQALRRATAVLDTFPYGGCLTVLEGLSNGVPVVTLPAKYVRGRFALAMYQQMGYTELVADDVQEYVSLAVQLGKDRDFRQKVVTKVEGAYRESLHQHHQSAQEWAAFIVRAHRGA 680          
BLAST of mRNA_L-elsbetiae_contig7855.16811.1 vs. uniprot
Match: A0A6H5KUN2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUN2_9PHAE)

HSP 1 Score: 371 bits (953), Expect = 1.470e-116
Identity = 218/409 (53.30%), Postives = 258/409 (63.08%), Query Frame = 1
Query:    1 FQRFLLTQCVWWGHPVTPSTGSIDYFLSLDVELDEGQDDYLEQMVRMDILNTADFIQVILARAPLILPRAQPQFSKQNFAVGCRCRQMDLDDSTEN--PELPSGSPSTRNDDSASTWSPAPDRPEILSTEPAAGSNKPASASNVTDLAGKALSRRAAAVEANTRSDPVGGEVWSNPLCSRIYLVLGRLFKLHPDFDAAIEGILAGDTNGCVVLIHETRDEEWTRVVWTRLRDVLVPKG--------------MCN------FDRLRIMHHWLYPQALRRATAVLDTFPYGGCLTVLEGLSSGVPVVTLPAKFIRGRFALAMYQQMGYSDLVADDVA---------------------EYVSIAVRLGVDQALRKEAVIRVQEACRESLHKHQQSAHEWAAFFVRAHRAA 1098
            F R    QCVWWGHPVTPSTGS+DYFLSLDVELD GQDDYLEQMVRMD++NTA F Q+    + L LP   P     N   G +      +   E+    + S   S  N D A     +    ++ + E  AG   PA+A+  T +A +               D   G+  + P C + YLV+GRLFKLHPDFD AI+GIL G  +GCV+LIHET+DEEWTRVVW+RLRDVL P+               +C       F RLRIMHHWLYPQALRRATAVLDTFPYGGCLTVLEGLS+GVPVVTLPAK++RGRFALA+YQQMGY++LVADDV                      EYVS+AV+LG DQ LRK+ V +V+ A RESLH+H QSA EWAAF VRAHR A
Sbjct:  557 FARLAPVQCVWWGHPVTPSTGSVDYFLSLDVELDGGQDDYLEQMVRMDVVNTAHFKQMAAWVSDLGLPSGPPGRRDINSDKGPQSPLSFTNGGEESLGTSISSTIKSFSNADMADILQISLPYADLAAAE--AGPTTPAAATT-TGVAARTYDEH----------DVTIGDQEAGPSCRQKYLVMGRLFKLHPDFDVAIKGILEGGKDGCVILIHETKDEEWTRVVWSRLRDVLAPREKNTRIVLQPFLVRPLCVDCAVGLFGRLRIMHHWLYPQALRRATAVLDTFPYGGCLTVLEGLSNGVPVVTLPAKYVRGRFALAIYQQMGYTELVADDVQVGVVSPQISSGFSELFIIGRQEYVSLAVQLGKDQDLRKKVVAKVEGAYRESLHQHHQSAQEWAAFIVRAHRGA 952          
BLAST of mRNA_L-elsbetiae_contig7855.16811.1 vs. uniprot
Match: A0A7S2CRM6_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CRM6_9STRA)

HSP 1 Score: 163 bits (413), Expect = 2.900e-43
Identity = 98/227 (43.17%), Postives = 120/227 (52.86%), Query Frame = 1
Query:  538 YLVLGRLFKLHPDFDAAIEGILAGDTNGCVVLIHETRDEEWTRVVWTRLRDVLVPKGMCN---------------------------------------FDRLRIMHHWLYPQALRRATAVLDTFPYGGCLTVLEGLSSGVPVVTLPAKFIRGRFALAMYQQMGYSD----LVADDVAEYVSIAVRLGVDQALRKEAVIRVQEACRESLHKHQQSAHEWAAFFVRAH 1089
            +LVLGRLFKLHPDFD  I GIL  D   CVVLI E R E WT  VW RL+     +   +                                         R+R +HHW Y + LR + AVLDTFPYGGCLT LE LS G PV+TLP++FIRGRF LAMY+QMG  D    LVA D A  V  A+R+G D+  R+     VQ A ++ LH++ ++  EW   F   H
Sbjct:   98 FLVLGRLFKLHPDFDEIILGILYADRLSCVVLIQE-RHELWTARVWERLQSAAQRREKESTAEWSHRQHHGRRPSSDIGGTMEEEESGHFVEDFNAIEVLSRVRFIHHWNYLRVLRLSYAVLDTFPYGGCLTSLESLSFGKPVLTLPSRFIRGRFTLAMYRQMGLDDPSIGLVAVDAASMVQSAIRIGTDRNYRRNVSQWVQIAYKDRLHRNLEAGVEWGRLFRALH 323          
BLAST of mRNA_L-elsbetiae_contig7855.16811.1 vs. uniprot
Match: A0A7S3K439_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3K439_9STRA)

HSP 1 Score: 157 bits (396), Expect = 1.930e-38
Identity = 86/188 (45.74%), Postives = 117/188 (62.23%), Query Frame = 1
Query:  535 IYLVLGRLFKLHPDFDAAIEGILAGDTNGCVVLIHETRDEEWTRVVWTRL--RDVLVPKGMCNFDRLRIMHHWLYPQALRRATAVLDTFPYGGCLTVLEGLSSGVPVVTLPAKFIRGRFALAMYQQMGYSDLVADDVAEYVSIAVRLGVDQALRKEAVIRVQEACRESLHKHQQSAHEWAAFFVRAHR 1092
            IYLVLGRLFKLHP FD  +  IL  D  G + LI E +       +W+RL  R + +        R+R +H+W Y + L  AT VLDT+PYGGCLT L+ +S+GVP+VTLP+ F RGRFA ++Y QM ++ LVA D  +++SI  RLG D   R +A+  +Q A  + +H  +  A+EWA FF R  R
Sbjct:  501 IYLVLGRLFKLHPKFDDVLLRILDTDPTGIIALIIEPQ-RFILHDLWSRLKKRALFLFGNDLLLRRIRFLHYWKYIEILSIATLVLDTYPYGGCLTALDAMSNGVPLVTLPSTFERGRFAASIYAQMNFTHLVARDADDFISIVTRLGTDATFRDQAIASLQGAYPQ-VHHTRDVANEWAKFFTRVLR 686          
BLAST of mRNA_L-elsbetiae_contig7855.16811.1 vs. uniprot
Match: A0A7S3UTW7_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UTW7_HETAK)

HSP 1 Score: 140 bits (354), Expect = 2.260e-35
Identity = 73/142 (51.41%), Postives = 89/142 (62.68%), Query Frame = 1
Query:  520 PLCSRIYLVLGRLFKLHPDFDAAIEGILAGDTNGCVVLIHETRDEEWTRVVWTRLRDVLVPKGMCNFDRLRIMHHWLYPQALRRATAVLDTFPYGGCLTVLEGLSSGVPVVTLPAKFIRGRFALAMYQQMGYSDLVADDVAE 945
            P  + +YLVLGRLFKLHPDFD AI  IL G  N  VVLI E  + + T ++W R++  +         RL  +HHW Y  ALR A AVLDT+PYGGCLT LE LS   P+VTLP+  ++GRF LAMY+QM    LV     E
Sbjct:   18 PPDAELYLVLGRLFKLHPDFDLAIIEILKGHANAHVVLIAEKHNNQITSLLWHRIKATVAENDRHILSRLVFVHHWNYVAALRHAAAVLDTYPYGGCLTSLEALSHLRPLVTLPSAHVKGRFTLAMYKQMEDLGLVVPATEE 159          
BLAST of mRNA_L-elsbetiae_contig7855.16811.1 vs. uniprot
Match: A0A8J2T266_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2T266_9STRA)

HSP 1 Score: 146 bits (368), Expect = 1.530e-34
Identity = 84/188 (44.68%), Postives = 115/188 (61.17%), Query Frame = 1
Query:  535 IYLVLGRLFKLHPDFDAAIEGILAGDTNGCVVLIHETRDEEWTRVVWTRLRDVLVPKGMCNFDRLRIMHHWLYPQALRRATAVLDTFPYGGCLTVLEGLSSGVPVVTLPAKFIRGRFALAMYQQMGYSDLVADDVAEYVSIAVRLGVDQALRKEAVIRVQEACRESLHKHQQSAHEWAAFFVRAHRAA 1098
            IYLVLGRLFK+H  FD  +  +L  D  G V+L+ E + E  T   + R++   + + +   DR+  + +W Y  AL  A  VLDT PYGGCLT L+ LS+GVP+V LP    RGR A ++YQQMG SD VA + ++YVSIA RLG D A  + AV R++ +  ++ H+    A EWA  F+R  R A
Sbjct:  558 IYLVLGRLFKVHALFDDMLLDLLERDRTGVVLLVGEPQ-EPLTIKTYQRIQRRGLERNL-KTDRIHFIDYWAYMGALATARVVLDTHPYGGCLTALDALSNGVPLVVLPGPAERGRHAASIYQQMGVSDFVAANQSDYVSIAARLGTDDAYHEAAVARIRASYLDA-HRAGAVAAEWAGAFLRMARGA 742          
BLAST of mRNA_L-elsbetiae_contig7855.16811.1 vs. uniprot
Match: F0Y355_AURAN (Glyco_transf_41 domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y355_AURAN)

HSP 1 Score: 137 bits (345), Expect = 1.370e-31
Identity = 74/184 (40.22%), Postives = 109/184 (59.24%), Query Frame = 1
Query:  535 IYLVLGRLFKLHPDFDAAIEGILAGDTNGCVVLIHETRDEEWTRVVWTRLRDVLVPKGMCNF-DRLRIMHHWLYPQALRRATAVLDTFPYGGCLTVLEGLSSGVPVVTLPAKFIRGRFALAMYQQMGYSDLVADDVAEYVSIAVRLGVDQALRKEAVIRVQEACRESLHKHQQSAHEWAAFFVR 1083
            +YL+LGRLFK+H  FD  +  +L  D  G V ++ E +  + T +++ RLR     +   +  +RLR++ +W Y  AL  A   LDT+PYGGCLT L+ LS+GVP+V LP    RGR A+++Y QM  +D VA D A+YV +AV L  D  +   AV  ++    ++ H+    A EWA  F+R
Sbjct:  160 LYLILGRLFKVHALFDDILLDVLEADPTGVVAVVSEPQ-RQLTSLMFRRLRASAGARNRAHLLERLRVVDYWNYVNALSNARVALDTYPYGGCLTALDALSNGVPLVVLPGPLERGRHAMSIYGQMNLTDFVARDAADYVRLAVALATDDDVHARAVGEIRAKYPDA-HRAGDVAAEWAGAFLR 341          
BLAST of mRNA_L-elsbetiae_contig7855.16811.1 vs. uniprot
Match: A0A2E4XRJ1_9PROT (Glyco_transf_41 domain-containing protein n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2E4XRJ1_9PROT)

HSP 1 Score: 114 bits (285), Expect = 7.960e-24
Identity = 63/169 (37.28%), Postives = 96/169 (56.80%), Query Frame = 1
Query:  490 DPVGGEV-WSNPLCSRIYLVLGRLFKLHPDFDAAIEGILAGDTNGCVVLIHETRDEEWTRVVWTRLRDVLVPKGMCNFDRLRIMHHWLYPQALRRATAVLDTFPYGGCLTVLEGLSSGVPVVTLPAKFIRGRFALAMYQQMGYSDLVADDVAEYVSIAVRLGVDQALRK 993
            +P G    ++ P  + +Y +   LFK+HPD DAA+  IL GD  G +VL+ E  D  W + V  R  + L          L    H  Y +    +  VLD++P+ G  T  + ++ GVPVVT P +++RGRF++A +++MG S+LVA D+AE+  IA+RLG D   R+
Sbjct:  401 NPAGARADFALPEDATVYFLAQNLFKIHPDMDAALRRILDGDRKGRLVLL-EGHDPGWGQAVRERFAETL-RDTTSRVVFLERQSHDDYMRLFTLSDVVLDSYPFSGGNTTYQAIAMGVPVVTCPGRYLRGRFSMATFERMGMSELVAGDMAEFADIALRLGTDDGYRR 567          
BLAST of mRNA_L-elsbetiae_contig7855.16811.1 vs. uniprot
Match: A0A1F3AU20_9PROT (Glyco_transf_41 domain-containing protein n=1 Tax=Alphaproteobacteria bacterium RIFOXYD12_FULL_60_8 TaxID=1797233 RepID=A0A1F3AU20_9PROT)

HSP 1 Score: 112 bits (281), Expect = 3.090e-23
Identity = 72/187 (38.50%), Postives = 101/187 (54.01%), Query Frame = 1
Query:  529 SRIYLVLGRLFKLHPDFDAAIEGILAGDTNGCVVLIHETRDEEWTRVVWTRL-RDVLVPKGMCNFDRLRIMHHWLYPQALRRATAVLDTFPYGGCLTVLEGLSSGVPVVTLPAKFIRGRFALAMYQQMGYSDLVADDVAEYVSIAVRLGVDQALRKEAVIRVQEACRESLHKHQQSAHEWAAFFVRA 1086
            + +Y+    LFKLHPD DA    IL  D  G VVLI    D  WT  +  R  R +    G   +  L  + H  + + LR    +LD   + G LT L+  + G P++TLPA+++RGR   A ++QMG  D +A  V +YV+ AVRLG D+A R      + EAC + L+ +Q  A E AAFF+ A
Sbjct:  469 AHLYICPQTLFKLHPDIDAIFRAILVRDPLGQVVLIEGRAD--WTNTLRARFARSLGHTVGRVRY--LPRLSHPEFLEFLRLGDVMLDPLHFSGGLTSLQAFAVGTPIITLPARYMRGRVTYAYWKQMGLDDGIAASVEDYVNKAVRLGTDRAERSRVSKAILEACPQ-LYDNQTVAEEIAAFFIEA 650          
BLAST of mRNA_L-elsbetiae_contig7855.16811.1 vs. uniprot
Match: A0A2E7RAH6_9PROT (Protein O-GlcNAc transferase n=2 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2E7RAH6_9PROT)

HSP 1 Score: 111 bits (278), Expect = 7.920e-23
Identity = 63/163 (38.65%), Postives = 89/163 (54.60%), Query Frame = 1
Query:  535 IYLVLGRLFKLHPDFDAAIEGILAGDTNGCVVLIHETRDEEWTRVVWTRLRDVLVPKGMCNFDRLRIMHHWLYPQALRRATAVLDTFPYGGCLTVLEGLSSGVPVVTLPAKFIRGRFALAMYQQMGYSDLVADDVAEYVSIAVRLGVDQALRKEAVIRVQEAC 1023
            +YL    LFK+HP+ DAA+  IL GD  G +V+ H    + WT  +  R    L  + +C    L  +    +   +  A  +LDT+P+GG  T  +G S+G+P+VT P KF+RGR A+A+YQ M   D VA    EYV IA+RLG D   R     ++ E C
Sbjct:  506 LYLCPQSLFKIHPEMDAALAKILQGDPTGQLVIFHGNA-KIWTEKLLQRWMP-LFGEAICRVVVLERVSWQEFLNIMSLADVMLDTWPFGGGNTNYQGFSAGLPIVTFPGKFLRGRAAMALYQHMKIDDCVAGSPKEYVEIAIRLGRDADFRTSVSEKILERC 666          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7855.16811.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FK50_ECTSI5.530e-13259.04Putative methyltransferase n=1 Tax=Ectocarpus sili... [more]
A0A6H5KUN2_9PHAE1.470e-11653.30Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S2CRM6_9STRA2.900e-4343.17Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S3K439_9STRA1.930e-3845.74Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A7S3UTW7_HETAK2.260e-3551.41Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A8J2T266_9STRA1.530e-3444.68Hypothetical protein n=2 Tax=Pelagomonas calceolat... [more]
F0Y355_AURAN1.370e-3140.22Glyco_transf_41 domain-containing protein n=1 Tax=... [more]
A0A2E4XRJ1_9PROT7.960e-2437.28Glyco_transf_41 domain-containing protein n=1 Tax=... [more]
A0A1F3AU20_9PROT3.090e-2338.50Glyco_transf_41 domain-containing protein n=1 Tax=... [more]
A0A2E7RAH6_9PROT7.920e-2338.65Protein O-GlcNAc transferase n=2 Tax=Rhodospirilla... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7855contigL-elsbetiae_contig7855:379..2936 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score332.4
Seed ortholog evalue2.4e-88
Seed eggNOG ortholog2880.D7FK50
Hectar predicted targeting categoryother localisation
EggNOG OGs2D0DI@1,2SDSU@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons5
Model size1245
Cds size978
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816869.4787567-UTR-L-elsbetiae_contig7855:378..5071622816869.4787567-UTR-L-elsbetiae_contig7855:378..507Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7855 379..507 +
1691683874.698396-UTR-L-elsbetiae_contig7855:378..5071691683874.698396-UTR-L-elsbetiae_contig7855:378..507Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7855 379..507 +
1622816869.5549467-UTR-L-elsbetiae_contig7855:2798..29361622816869.5549467-UTR-L-elsbetiae_contig7855:2798..2936Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7855 2799..2936 +
1691683874.7666025-UTR-L-elsbetiae_contig7855:2798..29361691683874.7666025-UTR-L-elsbetiae_contig7855:2798..2936Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7855 2799..2936 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816869.489562-CDS-L-elsbetiae_contig7855:507..5781622816869.489562-CDS-L-elsbetiae_contig7855:507..578Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7855 508..578 +
1691683874.7142978-CDS-L-elsbetiae_contig7855:507..5781691683874.7142978-CDS-L-elsbetiae_contig7855:507..578Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7855 508..578 +
1622816869.5033233-CDS-L-elsbetiae_contig7855:836..13481622816869.5033233-CDS-L-elsbetiae_contig7855:836..1348Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7855 837..1348 +
1691683874.7257783-CDS-L-elsbetiae_contig7855:836..13481691683874.7257783-CDS-L-elsbetiae_contig7855:836..1348Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7855 837..1348 +
1622816869.5170996-CDS-L-elsbetiae_contig7855:1771..18841622816869.5170996-CDS-L-elsbetiae_contig7855:1771..1884Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7855 1772..1884 +
1691683874.7350602-CDS-L-elsbetiae_contig7855:1771..18841691683874.7350602-CDS-L-elsbetiae_contig7855:1771..1884Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7855 1772..1884 +
1622816869.527946-CDS-L-elsbetiae_contig7855:2311..24281622816869.527946-CDS-L-elsbetiae_contig7855:2311..2428Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7855 2312..2428 +
1691683874.7466614-CDS-L-elsbetiae_contig7855:2311..24281691683874.7466614-CDS-L-elsbetiae_contig7855:2311..2428Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7855 2312..2428 +
1622816869.5411973-CDS-L-elsbetiae_contig7855:2633..27981622816869.5411973-CDS-L-elsbetiae_contig7855:2633..2798Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7855 2634..2798 +
1691683874.7565255-CDS-L-elsbetiae_contig7855:2633..27981691683874.7565255-CDS-L-elsbetiae_contig7855:2633..2798Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7855 2634..2798 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7855.16811.1prot_L-elsbetiae_contig7855.16811.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7855 508..2798 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7855.16811.1

>prot_L-elsbetiae_contig7855.16811.1 ID=prot_L-elsbetiae_contig7855.16811.1|Name=mRNA_L-elsbetiae_contig7855.16811.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=326bp
MVRMDILNTADFIQVILARAPLILPRAQPQFSKQNFAVGCRCRQMDLDDS
TENPELPSGSPSTRNDDSASTWSPAPDRPEILSTEPAAGSNKPASASNVT
DLAGKALSRRAAAVEANTRSDPVGGEVWSNPLCSRIYLVLGRLFKLHPDF
DAAIEGILAGDTNGCVVLIHETRDEEWTRVVWTRLRDVLVPKGMCNFDRL
RIMHHWLYPQALRRATAVLDTFPYGGCLTVLEGLSSGVPVVTLPAKFIRG
RFALAMYQQMGYSDLVADDVAEYVSIAVRLGVDQALRKEAVIRVQEACRE
SLHKHQQSAHEWAAFFVRAHRAAGV*
back to top

mRNA from alignment at L-elsbetiae_contig7855:379..2936+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7855.16811.1 ID=mRNA_L-elsbetiae_contig7855.16811.1|Name=mRNA_L-elsbetiae_contig7855.16811.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2558bp|location=Sequence derived from alignment at L-elsbetiae_contig7855:379..2936+ (Laminarionema elsbetiae ELsaHSoW15)
TTTCAACGATTCCTACTGACGCAGTGTGTCTGGTGGGGGCACCCGGTGAC ACCGAGCACCGGTTCTATCGACTATTTCTTGTCCCTGGATGTGGAGTTAG ACGAAGGCCAAGATGACTACCTGGAGCAGATGGTCCGCATGGACATACTC AACACGGCGGATTTCATTCAGGTTATTCTGGCGCGCGCCCCCCTCATTCT GTGACCGTGTTCCCCCGACTCTGTGACTAGACGCGCTACATCCTGAACTT TTGCATCAGTTTGTTCACTAGATGAGCGAACACTGCTGTGTTGTCGTCAG ACATGGTGTGCGCGCAGTTCCTTGCTCCGCAGCACATGTCTCGCACCCGA TAAAAGAGCCCCACCCAGCCCGCAAGATATTCGTCCAAACTGATGCCTCG AGATCCCGACGACCTCGATCACGGAACAACCAGCAAGCCGAGGAGCGATT GATTCAAGTCCCAGAGCTCAACCGCAGTTTTCAAAACAAAACTTCGCTGT CGGTTGTCGTTGTCGCCAGATGGATTTGGATGATTCGACAGAAAATCCCG AGCTGCCATCGGGTTCGCCGTCTACCCGCAACGACGACAGTGCTTCGACG TGGTCCCCTGCGCCGGACCGGCCGGAAATCTTGAGTACTGAACCCGCTGC TGGATCGAACAAGCCTGCTTCCGCTTCCAATGTTACGGATTTGGCTGGAA AAGCTCTTTCTCGTCGTGCCGCTGCCGTCGAGGCAAACACTAGGTCTGAC CCCGTCGGCGGTGAGGTGTGGTCCAATCCGCTCTGCTCTCGAATCTACCT GGTTCTGGGACGCCTGTTCAAACTGCACCCGGATTTCGATGCCGCCATAG AGGGAATTCTGGCCGGGGACACGAATGGGTGTGTGGTGTTGATCCACGAG ACACGGGACGAGGAATGGACTCGAGTGGTGTGGACCAGGCTCCGGGACGT GCTTGTCCCAAAAGGTATGTGTGTTTTTCGATTCAATAGATTTTATGGCC GATGAGTAGGCCCAGTGAGAGGGCACTTATTTTTCCTACATAGCTCACAA GAAACGGTGGAGTTGAATTAACTTGCCGGCGAACTTGGGAGCACAATTTG TTACCTTTGAATCGTAAGAAATAGAGGAAGCAATGTGAAGACGTTCCTAG TCCTGCGATTGCAGCCACTTAAAGACAACACTCGATATGCCTCTCGTTCT TGGCGCGATCAAACGCACACGGCCAGATGCCAACACAGGCGCGAGTCGCG TCTTCAGCAGCTTCGCTCGGAGCCGAGGTGATGGAATACTAGAAGTTGCG AAAAGCCCCCCACCCACCCCCCCTACCGCTTCCCTTCACATGTGTGATTT GTGCACACCCTTCTCCGTCCGGTGCCGACCCACTTCTGCATAGGCAATTT CGATCGTCTACGAATCATGCATCACTGGCTCTACCCGCAGGCTCTTCGAC GTGCCACCGCCGTCCTCGACACCTTTCCGTACGGTGGTTGTCTAACGGTG CTAGAGGTGAGCGAACGCTGGTTGTTGCTCTTAAGATTCCGCAATTGGTC GTTCATTGTGCTGGGTTTACGGGGCAGAGCTATGGGGGTCCTACTGCTTC CGCAAAGTACAAAATGCGTGCTAATTGAAGTTAGTATAAGGAGCAGGTCT CGTGGAATAGCCAACCAACTTTTCGTAGTCGTTGCGCCTCCTGTTGGCCC GATGTTTTCGCTGATTTTCAACCGAAACTAAAACTATTGGAAGTGGTGTG GCTGCGTCGAAGGATTGCTGAGGGTCAATAATAAGGTGCTGGCTGCAGCT GCCGCTGGAGGAGAAAAACTACTACAAACTTAGGTTACCTTCCCTTCGTC ACCCCTGACAATTGTTTGTAAAAGTGTGTCCGTCGATTGTCGGTCGCGGT GTCTTTACTGCCGCGCTACCGCCCACGCACCAGGGGCTGTCGAGCGGCGT GCCGGTGGTGACGCTCCCAGCCAAGTTTATCAGAGGCAGATTTGCCCTAG CCATGTATCAGCAGATGGGATATTCCGACCTCGTGGCCGACGACGTCGCG GTAAGCGTGCAGTTGTGGATGACGTTGTATGTAACTACTGATGCTGTACT GAACAGTCCGTGCTCCAAGAGTCCCAGTGCAGGCTATTTAGAGCTTGCTA AAGCTGTTGTGATTACATCCACAACCACCCGCCAACTAATCTGGTCCGAA TGCGAATGCTTATTTCTCGTGCGCTGCGCAACTCCCCCTTTCTGTCGCAC CTTAGGAATACGTCTCGATAGCGGTTAGGCTTGGAGTAGACCAAGCACTC AGGAAGGAGGCGGTGATCAGGGTGCAAGAGGCTTGCCGAGAGTCCTTGCA TAAACACCAGCAGAGCGCCCACGAATGGGCGGCATTTTTTGTTCGTGCTC ACCGGGCCGCGGGAGTATAACAAATTTAATGGACACAACCCGTATTATGT GATTAATTCTTGTCGGCCCCTCGGTGATGACGAACTTCCACAGCGTGACG ACAAACGAGCACGTTTTTTTTTGTGCATCGATCTCGCGTGTTGTATCTGC GTACTACG
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig7855:379..2936+

>mRNA_L-elsbetiae_contig7855.16811.1 ID=mRNA_L-elsbetiae_contig7855.16811.1|Name=mRNA_L-elsbetiae_contig7855.16811.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1956bp|location=Sequence derived from alignment at L-elsbetiae_contig7855:379..2936+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGTCCGCATGGACATACTCAACACGGCGGATTTCATTCAGGTTATTCT
GGCGCGCGCCCCCCTCATTCTATGGTCCGCATGGACATACTCAACACGGC
GGATTTCATTCAGGTTATTCTGGCGCGCGCCCCCCTCATTCTTCCCAGAG
CTCAACCGCAGTTTTCAAAACAAAACTTCGCTGTCGGTTGTCGTTGTCGC
CAGATGGATTTGGATGATTCGACAGAAAATCCCGAGCTGCCATCGGGTTC
GCCGTCTACCCGCAACGACGACAGTGCTTCGACGTGGTCCCCTGCGCCGG
ACCGGCCGGAAATCTTGAGTACTGAACCCGCTGCTGGATCGAACAAGCCT
GCTTCCGCTTCCAATGTTACGGATTTGGCTGGAAAAGCTCTTTCTCGTCG
TGCCGCTGCCGTCGAGGCAAACACTAGGTCTGACCCCGTCGGCGGTGAGG
TGTGGTCCAATCCGCTCTGCTCTCGAATCTACCTGGTTCTGGGACGCCTG
TTCAAACTGCACCCGGATTTCGATGCCGCCATAGAGGGAATTCTGGCCGG
GGACACGAATGGGTGTGTGGTGTTGATCCACGAGACACGGGACGAGGAAT
GGACTCGAGTGGTGTGGACCAGGCTCCGGGACGTGCTTGTCCCAAAAGGT
ATGTTCCCAGAGCTCAACCGCAGTTTTCAAAACAAAACTTCGCTGTCGGT
TGTCGTTGTCGCCAGATGGATTTGGATGATTCGACAGAAAATCCCGAGCT
GCCATCGGGTTCGCCGTCTACCCGCAACGACGACAGTGCTTCGACGTGGT
CCCCTGCGCCGGACCGGCCGGAAATCTTGAGTACTGAACCCGCTGCTGGA
TCGAACAAGCCTGCTTCCGCTTCCAATGTTACGGATTTGGCTGGAAAAGC
TCTTTCTCGTCGTGCCGCTGCCGTCGAGGCAAACACTAGGTCTGACCCCG
TCGGCGGTGAGGTGTGGTCCAATCCGCTCTGCTCTCGAATCTACCTGGTT
CTGGGACGCCTGTTCAAACTGCACCCGGATTTCGATGCCGCCATAGAGGG
AATTCTGGCCGGGGACACGAATGGGTGTGTGGTGTTGATCCACGAGACAC
GGGACGAGGAATGGACTCGAGTGGTGTGGACCAGGCTCCGGGACGTGCTT
GTCCCAAAAGGTATGTGCAATTTCGATCGTCTACGAATCATGCATCACTG
GCTCTACCCGCAGGCTCTTCGACGTGCCACCGCCGTCCTCGACACCTTTC
CGTACGGTGGTTGTCTAACGGTGCTAGAGGCAATTTCGATCGTCTACGAA
TCATGCATCACTGGCTCTACCCGCAGGCTCTTCGACGTGCCACCGCCGTC
CTCGACACCTTTCCGTACGGTGGTTGTCTAACGGTGCTAGAGGGGCTGTC
GAGCGGCGTGCCGGTGGTGACGCTCCCAGCCAAGTTTATCAGAGGCAGAT
TTGCCCTAGCCATGTATCAGCAGATGGGATATTCCGACCTCGTGGCCGAC
GACGTCGCGGGGCTGTCGAGCGGCGTGCCGGTGGTGACGCTCCCAGCCAA
GTTTATCAGAGGCAGATTTGCCCTAGCCATGTATCAGCAGATGGGATATT
CCGACCTCGTGGCCGACGACGTCGCGGAATACGTCTCGATAGCGGTTAGG
CTTGGAGTAGACCAAGCACTCAGGAAGGAGGCGGTGATCAGGGTGCAAGA
GGCTTGCCGAGAGTCCTTGCATAAACACCAGCAGAGCGCCCACGAATGGG
CGGCATTTTTTGTTCGTGCTCACCGGGCCGCGGGAGTATAAGAATACGTC
TCGATAGCGGTTAGGCTTGGAGTAGACCAAGCACTCAGGAAGGAGGCGGT
GATCAGGGTGCAAGAGGCTTGCCGAGAGTCCTTGCATAAACACCAGCAGA
GCGCCCACGAATGGGCGGCATTTTTTGTTCGTGCTCACCGGGCCGCGGGA
GTATAA
back to top