mRNA_L-elsbetiae_contig7850.16810.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7850.16810.1
Unique NamemRNA_L-elsbetiae_contig7850.16810.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig7850.16810.1 vs. uniprot
Match: D7G548_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G548_ECTSI)

HSP 1 Score: 181 bits (460), Expect = 1.530e-51
Identity = 86/94 (91.49%), Postives = 88/94 (93.62%), Query Frame = 1
Query:    1 QPYGLMPLLDEEVKIPKGSASAWLSKCKTHNAQHPSLKNAGSNPNRFVVVHYAGEVQYEIGGFVTTNKDDLFRDLYDLVSGAQSDVTRSLFPPK 282
            +PYGLMPLLDEEVKIPKGS   WLSKCKTHNAQHP L+ AGSNPNRFVVVHYAGEV YEIGGFVTTNKDDLFRDLYDLVSGAQSDVTRSLFPPK
Sbjct:  428 KPYGLMPLLDEEVKIPKGSDGGWLSKCKTHNAQHPCLRPAGSNPNRFVVVHYAGEVPYEIGGFVTTNKDDLFRDLYDLVSGAQSDVTRSLFPPK 521          
BLAST of mRNA_L-elsbetiae_contig7850.16810.1 vs. uniprot
Match: A0A6H5KSK5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSK5_9PHAE)

HSP 1 Score: 181 bits (460), Expect = 3.950e-51
Identity = 86/94 (91.49%), Postives = 88/94 (93.62%), Query Frame = 1
Query:    1 QPYGLMPLLDEEVKIPKGSASAWLSKCKTHNAQHPSLKNAGSNPNRFVVVHYAGEVQYEIGGFVTTNKDDLFRDLYDLVSGAQSDVTRSLFPPK 282
            +PYGLMPLLDEEVKIPKGS   WLSKCKTHNAQHP L+ AGSNPNRFVVVHYAGEV YEIGGFVTTNKDDLFRDLYDLVSGAQSDVTRSLFPPK
Sbjct:  544 RPYGLMPLLDEEVKIPKGSDGGWLSKCKTHNAQHPCLRPAGSNPNRFVVVHYAGEVPYEIGGFVTTNKDDLFRDLYDLVSGAQSDVTRSLFPPK 637          
BLAST of mRNA_L-elsbetiae_contig7850.16810.1 vs. uniprot
Match: A0A836C908_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C908_9STRA)

HSP 1 Score: 139 bits (349), Expect = 3.660e-36
Identity = 60/95 (63.16%), Postives = 79/95 (83.16%), Query Frame = 1
Query:    1 QPYGLMPLLDEEVKIPKGSASAWLSKCKTHNAQHPSLKNA-GSNPNRFVVVHYAGEVQYEIGGFVTTNKDDLFRDLYDLVSGAQSDVTRSLFPPK 282
            +PYGLMPLLDEEVK+P+G  +AWL KCK HNA+HP+L    G NPNRF V HYAG+V Y+ GGFV TN+D+LFRDLYD++S +++ +T+++FPPK
Sbjct:  648 KPYGLMPLLDEEVKLPRGGDAAWLGKCKQHNAEHPALAGTPGGNPNRFTVRHYAGDVGYDCGGFVDTNRDNLFRDLYDIMSSSRAPITKAVFPPK 742          
BLAST of mRNA_L-elsbetiae_contig7850.16810.1 vs. uniprot
Match: A0A7R9UA42_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UA42_9STRA)

HSP 1 Score: 103 bits (256), Expect = 1.280e-23
Identity = 47/96 (48.96%), Postives = 68/96 (70.83%), Query Frame = 1
Query:    1 QPYGLMPLLDEEVKIPKGSASAWLSKCKTHNAQHPSLKNA--GSNPNRFVVVHYAGEVQYEIGGFVTTNKDDLFRDLYDLVSGAQSDVTRSLFPPK 282
            +P+GLM LLDEEV++P+GS S W+ KC T +A +P+ + A  G + + F + HYAG VQY   GF+  NKD L+R++YD++S A   +TR +FPPK
Sbjct:  555 KPFGLMVLLDEEVRLPQGSDSRWIQKCTTKHASNPNWQEARRGQSADVFAIQHYAGNVQYSSLGFMEKNKDSLYRNMYDMMSAAPHPLTREVFPPK 650          
BLAST of mRNA_L-elsbetiae_contig7850.16810.1 vs. uniprot
Match: R1CMV8_EMIHU (Myosin motor domain-containing protein (Fragment) n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=R1CMV8_EMIHU)

HSP 1 Score: 91.7 bits (226), Expect = 1.420e-19
Identity = 47/98 (47.96%), Postives = 63/98 (64.29%), Query Frame = 1
Query:    1 QPYGLMPLLDEEVKIPKGSASAWLSKCKTHNAQHPSL---KNAG-SNPNRFVVVHYAGEVQYEIGGFVTTNKDDLFRDLYDLVSGAQSDVTRSLFPPK 282
            +P+GL+ LLDEEV++P+GS + WL K    +A HP+    K  G +  + F V HYAGEV+Y   G V  N D L R LYDL+SG+   +TR+ FPPK
Sbjct:  445 RPFGLLNLLDEEVRVPQGSDAKWLEKVSQRHADHPAFGAPKQQGKARRDFFCVRHYAGEVRYSADGLVEKNADRLSRGLYDLLSGSSCGLTRACFPPK 542          
BLAST of mRNA_L-elsbetiae_contig7850.16810.1 vs. uniprot
Match: A0A7S1U0W2_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U0W2_9STRA)

HSP 1 Score: 90.5 bits (223), Expect = 3.720e-19
Identity = 42/95 (44.21%), Postives = 63/95 (66.32%), Query Frame = 1
Query:    1 QPYGLMPLLDEEVKIPKGSASAWLSKCKTHNAQHPSLKNAGSNPNR--FVVVHYAGEVQYEIGGFVTTNKDDLFRDLYDLVSGAQSDVTRSLFPP 279
            +P G++ LLDEE+++P+GS   WLSKC T +A   +  +A ++  R  F + HYAG VQY   GF+  NKD L+R++YD++S     +TR +FPP
Sbjct:  243 KPMGILILLDEEIRLPRGSDDRWLSKCGTRHAADANWIDAANDQARTMFTIQHYAGRVQYSSEGFMEKNKDALYRNMYDMMSRVPHPLTREVFPP 337          
BLAST of mRNA_L-elsbetiae_contig7850.16810.1 vs. uniprot
Match: A0A7S0DKF9_9EUKA (Hypothetical protein n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0DKF9_9EUKA)

HSP 1 Score: 86.3 bits (212), Expect = 1.150e-17
Identity = 39/93 (41.94%), Postives = 60/93 (64.52%), Query Frame = 1
Query:    1 QPYGLMPLLDEEVKIPKGSASAWLSKC-KTHNAQHPSLKNAGSNPNRFVVVHYAGEVQYEIGGFVTTNKDDLFRDLYDLVSGAQSDVTRSLFP 276
            +P G++P++DEE+++PKGS   ++ K  KTHN+           P  F+V+HYAG+V+YE  GF+  NKD L+ D YDL+S +Q     ++FP
Sbjct:  467 KPKGILPMIDEELRLPKGSDDTYVQKLLKTHNSNKNYFAKVLKRPKNFLVMHYAGDVEYESRGFLEKNKDRLYEDAYDLLSRSQFKFLANMFP 559          
BLAST of mRNA_L-elsbetiae_contig7850.16810.1 vs. uniprot
Match: A0A2P6NK47_9EUKA (Class VII unconventional myosin n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6NK47_9EUKA)

HSP 1 Score: 79.7 bits (195), Expect = 2.330e-15
Identity = 36/91 (39.56%), Postives = 57/91 (62.64%), Query Frame = 1
Query:    1 QPYGLMPLLDEEVKIPKGSASAWLSKCKTHNAQHPSLKNAGSNPNRFVVVHYAGEVQYEIGGFVTTNKDDLFRDLYDLVSGAQSDVTRSLF 273
            +P G++ LLDEE + PKG+   WL K  T+ A+H   +   ++ + F++ HYAGEV Y + GF+  N+D L  +L +L+  ++ D T SLF
Sbjct: 1186 KPIGVISLLDEECRFPKGTDLTWLEKMHTNYAKHAFYEKPRTSRDTFIIRHYAGEVSYNVAGFLDKNRDTLQEELMELLYDSKDDFTASLF 1276          
BLAST of mRNA_L-elsbetiae_contig7850.16810.1 vs. uniprot
Match: A0A7S0DMH7_9EUKA (Hypothetical protein n=2 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0DMH7_9EUKA)

HSP 1 Score: 77.4 bits (189), Expect = 1.490e-14
Identity = 31/88 (35.23%), Postives = 57/88 (64.77%), Query Frame = 1
Query:   10 GLMPLLDEEVKIPKGSASAWLSKCKTHNAQHPSLKNAGSNPNRFVVVHYAGEVQYEIGGFVTTNKDDLFRDLYDLVSGAQSDVTRSLF 273
            G++ ++DEE+++PKGS   ++ K +  +++ P  K     P  F+VVHYAG+V+Y+   F+  +KD +  DLY+L++  + D  ++LF
Sbjct:  665 GILHMIDEEIRVPKGSDDTFMKKLEKKHSKTPEFKRVLKRPTNFIVVHYAGDVEYKSANFLQKSKDRMTDDLYNLITHTKKDFLKNLF 752          
BLAST of mRNA_L-elsbetiae_contig7850.16810.1 vs. uniprot
Match: A0A7S3YT57_9EUKA (Hypothetical protein n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S3YT57_9EUKA)

HSP 1 Score: 77.4 bits (189), Expect = 1.500e-14
Identity = 36/93 (38.71%), Postives = 56/93 (60.22%), Query Frame = 1
Query:    1 QPYGLMPLLDEEVKIPKGSASAWLSKC-KTHNAQHPSLKNAGSNPNRFVVVHYAGEVQYEIGGFVTTNKDDLFRDLYDLVSGAQSDVTRSLFP 276
            +P G++P++DEE+++P+GS   +++K  KTH             P  F+V HYAG+V+YE  GF+  NKD L+ D YDL+S +       +FP
Sbjct:  678 KPKGVLPMIDEELRLPRGSDDTYVAKLLKTHAPNKNYFGKILKRPKNFIVRHYAGDVEYESHGFLEKNKDRLYEDAYDLLSKSSFKFLSKMFP 770          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7850.16810.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G548_ECTSI1.530e-5191.49Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KSK5_9PHAE3.950e-5191.49Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836C908_9STRA3.660e-3663.16P-loop containing nucleoside triphosphate hydrolas... [more]
A0A7R9UA42_9STRA1.280e-2348.96Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
R1CMV8_EMIHU1.420e-1947.96Myosin motor domain-containing protein (Fragment) ... [more]
A0A7S1U0W2_9STRA3.720e-1944.21Hypothetical protein n=2 Tax=Phaeomonas parva TaxI... [more]
A0A7S0DKF9_9EUKA1.150e-1741.94Hypothetical protein n=1 Tax=Amorphochlora amoebif... [more]
A0A2P6NK47_9EUKA2.330e-1539.56Class VII unconventional myosin n=1 Tax=Planoproto... [more]
A0A7S0DMH7_9EUKA1.490e-1435.23Hypothetical protein n=2 Tax=Amorphochlora amoebif... [more]
A0A7S3YT57_9EUKA1.500e-1438.71Hypothetical protein n=1 Tax=Lotharella globosa Ta... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7850contigL-elsbetiae_contig7850:8864..9145 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score173.3
Seed ortholog evalue5e-41
Seed eggNOG ortholog2880.D7G548
KEGG koko:K21868
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005856,GO:0015629,GO:0016459,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0032991,GO:0042623,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044422,GO:0044424,GO:0044430,GO:0044446,GO:0044464
EggNOG free text desc.translation initiation factor activity
EggNOG OGsCOG5022@1,KOG0160@2759
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131,ko04812
Ec32 ortholog descriptionMyosin head, motor domain
Ec32 orthologEc-00_008480.3
Exons1
Model size282
Cds size267
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816869.4369063-UTR-L-elsbetiae_contig7850:8863..88781622816869.4369063-UTR-L-elsbetiae_contig7850:8863..8878Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7850 8864..8878 +
1691683874.6659896-UTR-L-elsbetiae_contig7850:8863..88781691683874.6659896-UTR-L-elsbetiae_contig7850:8863..8878Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7850 8864..8878 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816869.4479082-CDS-L-elsbetiae_contig7850:8878..91451622816869.4479082-CDS-L-elsbetiae_contig7850:8878..9145Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7850 8879..9145 +
1691683874.6802301-CDS-L-elsbetiae_contig7850:8878..91451691683874.6802301-CDS-L-elsbetiae_contig7850:8878..9145Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7850 8879..9145 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7850.16810.1prot_L-elsbetiae_contig7850.16810.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7850 8879..9145 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7850.16810.1

>prot_L-elsbetiae_contig7850.16810.1 ID=prot_L-elsbetiae_contig7850.16810.1|Name=mRNA_L-elsbetiae_contig7850.16810.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=89bp
MPLLDEEVKIPKGSASAWLSKCKTHNAQHPSLKNAGSNPNRFVVVHYAGE
VQYEIGGFVTTNKDDLFRDLYDLVSGAQSDVTRSLFPPK
back to top

mRNA from alignment at L-elsbetiae_contig7850:8864..9145+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7850.16810.1 ID=mRNA_L-elsbetiae_contig7850.16810.1|Name=mRNA_L-elsbetiae_contig7850.16810.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=282bp|location=Sequence derived from alignment at L-elsbetiae_contig7850:8864..9145+ (Laminarionema elsbetiae ELsaHSoW15)
CAGCCGTACGGGCTAATGCCCCTCCTGGACGAGGAGGTGAAGATCCCCAA GGGGTCGGCCAGCGCGTGGCTCTCCAAGTGCAAGACCCACAACGCGCAGC ACCCGAGCCTCAAGAACGCCGGGTCCAACCCGAACCGGTTCGTCGTGGTC CACTACGCCGGGGAGGTGCAGTACGAGATCGGGGGCTTCGTGACTACCAA CAAGGACGACCTGTTCAGGGACCTGTACGACCTGGTGTCGGGGGCGCAGA GTGACGTCACGAGGTCGTTGTTCCCTCCCAAG
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig7850:8864..9145+

>mRNA_L-elsbetiae_contig7850.16810.1 ID=mRNA_L-elsbetiae_contig7850.16810.1|Name=mRNA_L-elsbetiae_contig7850.16810.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=534bp|location=Sequence derived from alignment at L-elsbetiae_contig7850:8864..9145+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCCCCTCCTGGACGAGGAGGTGAAGATCCCCAAGGGGTCGGCCAGCGC
GTGGCTCTCCAAGTGCAAGACCCACAACGCGCAGCACCCGAGCCTCAAGA
ACGCCGGGTCCAACCCGAACCGGTTCGTCGTGGTCCACTACGCCGGGGAG
GTGCAGTACGAGATCGGGGGCTTCGTGACTACCAACAAGGACGACCTGTT
CAGGGACCTGTACGACCTGGTGTCGGGGGCGCAGAGTGACGTCACGAGGT
CGTTGTTCCCTCCCAAGATGCCCCTCCTGGACGAGGAGGTGAAGATCCCC
AAGGGGTCGGCCAGCGCGTGGCTCTCCAAGTGCAAGACCCACAACGCGCA
GCACCCGAGCCTCAAGAACGCCGGGTCCAACCCGAACCGGTTCGTCGTGG
TCCACTACGCCGGGGAGGTGCAGTACGAGATCGGGGGCTTCGTGACTACC
AACAAGGACGACCTGTTCAGGGACCTGTACGACCTGGTGTCGGGGGCGCA
GAGTGACGTCACGAGGTCGTTGTTCCCTCCCAAG
back to top