mRNA_L-elsbetiae_contig785.16809.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig785.16809.1
Unique NamemRNA_L-elsbetiae_contig785.16809.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig785.16809.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig785contigL-elsbetiae_contig785:32374..32744 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size372
Cds size303
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816868.9036674-CDS-L-elsbetiae_contig785:32373..326761622816868.9036674-CDS-L-elsbetiae_contig785:32373..32676Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig785 32374..32676 +
1691683874.1899211-CDS-L-elsbetiae_contig785:32373..326761691683874.1899211-CDS-L-elsbetiae_contig785:32373..32676Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig785 32374..32676 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816868.9159033-UTR-L-elsbetiae_contig785:32676..327441622816868.9159033-UTR-L-elsbetiae_contig785:32676..32744Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig785 32677..32744 +
1691683874.199243-UTR-L-elsbetiae_contig785:32676..327441691683874.199243-UTR-L-elsbetiae_contig785:32676..32744Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig785 32677..32744 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig785.16809.1prot_L-elsbetiae_contig785.16809.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig785 32374..32676 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig785.16809.1

>prot_L-elsbetiae_contig785.16809.1 ID=prot_L-elsbetiae_contig785.16809.1|Name=mRNA_L-elsbetiae_contig785.16809.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=101bp
QVEAQAETPGGDGGTSASGVRKPCCFEPESAGPSYGFNPGQHQYLVAAAA
SPAATVVAEPATAPATAAVGAATVGAVETATAPSTPDMGCDQCPTKRWER
*
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mRNA from alignment at L-elsbetiae_contig785:32374..32744+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig785.16809.1 ID=mRNA_L-elsbetiae_contig785.16809.1|Name=mRNA_L-elsbetiae_contig785.16809.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=371bp|location=Sequence derived from alignment at L-elsbetiae_contig785:32374..32744+ (Laminarionema elsbetiae ELsaHSoW15)
CAAGTCGAAGCTCAGGCTGAAACGCCCGGCGGCGACGGCGGCACTTCCGC AAGCGGCGTCCGCAAGCCGTGCTGCTTCGAGCCCGAAAGTGCAGGCCCGT CCTACGGCTTCAACCCCGGTCAGCACCAGTATTTAGTAGCAGCCGCAGCA TCACCAGCCGCAACAGTAGTAGCGGAACCAGCCACAGCACCAGCCACAGC AGCAGTCGGTGCAGCCACAGTAGGGGCAGTAGAAACCGCGACGGCACCCT CCACTCCAGATATGGGGTGTGATCAATGCCCAACGAAGCGGTGGGAAAGG TGACGGAATGAAAGGTTGCCGCGGAGGGGATGTCGGGGACAGACAGAGGC CATGGCTGCGGCCGTAGGGAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig785:32374..32744+

>mRNA_L-elsbetiae_contig785.16809.1 ID=mRNA_L-elsbetiae_contig785.16809.1|Name=mRNA_L-elsbetiae_contig785.16809.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=606bp|location=Sequence derived from alignment at L-elsbetiae_contig785:32374..32744+ (Laminarionema elsbetiae ELsaHSoW15)
CAAGTCGAAGCTCAGGCTGAAACGCCCGGCGGCGACGGCGGCACTTCCGC
AAGCGGCGTCCGCAAGCCGTGCTGCTTCGAGCCCGAAAGTGCAGGCCCGT
CCTACGGCTTCAACCCCGGTCAGCACCAGTATTTAGTAGCAGCCGCAGCA
TCACCAGCCGCAACAGTAGTAGCGGAACCAGCCACAGCACCAGCCACAGC
AGCAGTCGGTGCAGCCACAGTAGGGGCAGTAGAAACCGCGACGGCACCCT
CCACTCCAGATATGGGGTGTGATCAATGCCCAACGAAGCGGTGGGAAAGG
TGACAAGTCGAAGCTCAGGCTGAAACGCCCGGCGGCGACGGCGGCACTTC
CGCAAGCGGCGTCCGCAAGCCGTGCTGCTTCGAGCCCGAAAGTGCAGGCC
CGTCCTACGGCTTCAACCCCGGTCAGCACCAGTATTTAGTAGCAGCCGCA
GCATCACCAGCCGCAACAGTAGTAGCGGAACCAGCCACAGCACCAGCCAC
AGCAGCAGTCGGTGCAGCCACAGTAGGGGCAGTAGAAACCGCGACGGCAC
CCTCCACTCCAGATATGGGGTGTGATCAATGCCCAACGAAGCGGTGGGAA
AGGTGA
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