mRNA_L-elsbetiae_contig785.16807.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig785.16807.1
Unique NamemRNA_L-elsbetiae_contig785.16807.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig785.16807.1 vs. uniprot
Match: A0A800F9R1_9BACT (Uncharacterized protein n=1 Tax=Gemmatimonadetes bacterium TaxID=2026742 RepID=A0A800F9R1_9BACT)

HSP 1 Score: 74.3 bits (181), Expect = 2.730e-13
Identity = 45/91 (49.45%), Postives = 54/91 (59.34%), Query Frame = 1
Query:   49 PLIQAAGDGCLSTVQALLSAGADVNGRTDDGLSALHIDAHHGHDVIVSFLLQKGAPKNALSRGDQTPLMRAAEEGCLAVVETLLDAGADIN 321
            PL+ AA +G + T + LL AGADV      G SAL I AH GH  +  +LL+KGA  NA   G  T L  A   G LA+VE LLD GAD+N
Sbjct:  225 PLLFAARNGDVETARVLLDAGADVQDTEASGASALVIAAHSGHGPLGVYLLEKGADPNASGAG-YTALHAAVLRGQLALVEALLDHGADLN 314          
BLAST of mRNA_L-elsbetiae_contig785.16807.1 vs. uniprot
Match: UPI001F4FF19D (poly [ADP-ribose] polymerase tankyrase-1-like n=2 Tax=Schistocerca TaxID=7008 RepID=UPI001F4FF19D)

HSP 1 Score: 65.1 bits (157), Expect = 1.650e-10
Identity = 41/91 (45.05%), Postives = 51/91 (56.04%), Query Frame = 1
Query:   52 LIQAAGDGCLSTVQALLSAGADVNGRTDDGLSALHIDAHHGHDVIVSFLLQKGAPKNALSRG-DQTPLMRAAEEGCLAVVETLLDAGADIN 321
            LIQAA  G +  ++ALL+ GADV      G +ALH  A  GH      LL+ GAP +A   G  +TPL  AA+ G  AV + LL A AD N
Sbjct:   62 LIQAARQGAVWELRALLAVGADVGAMGGGGWTALHWTAWEGHVETARCLLEAGAPVDAWDGGLKRTPLFCAAQRGHAAVTQLLLSASADPN 152          
BLAST of mRNA_L-elsbetiae_contig785.16807.1 vs. uniprot
Match: H5WQM9_9BURK (Ankyrin repeat-containing protein n=1 Tax=Burkholderiales bacterium JOSHI_001 TaxID=864051 RepID=H5WQM9_9BURK)

HSP 1 Score: 61.6 bits (148), Expect = 2.080e-9
Identity = 43/102 (42.16%), Postives = 53/102 (51.96%), Query Frame = 1
Query:   25 ACGMDDELPLIQAAGDGCLSTVQALLSAGADVNGRTDDGLSALHIDAHH-----GHDVIVSFLLQKGAPKNALSRGDQTPLMRAAEEGCLAVVETLLDAGAD 315
            A   D   PL+ A   G L  V+ LL+AGADVN   +   +AL    H+     GH  +V+ LL  GA + A       PLM AA  G  AVV+ LLDAGAD
Sbjct:   28 AAAPDGLTPLMLACRLGHLPMVRCLLAAGADVNATDERSYTALFHACHNPDEDRGHPDVVTALLVAGADREACIGFGVRPLMYAAGNGEAAVVQALLDAGAD 129          
BLAST of mRNA_L-elsbetiae_contig785.16807.1 vs. uniprot
Match: A0A3N9NS20_9BACT (TonB family protein n=1 Tax=candidate division KSB1 bacterium TaxID=2172550 RepID=A0A3N9NS20_9BACT)

HSP 1 Score: 62.8 bits (151), Expect = 3.010e-9
Identity = 39/102 (38.24%), Postives = 57/102 (55.88%), Query Frame = 1
Query:   16 SFLACGMDDELPLIQAAGDGCLSTVQALLSAGADVNGRTDDGLSALHIDAHHGHDVIVSFLLQKGAPKNALSRGDQTPLMRAAEEGCLAVVETLLDAGADIN 321
            S L   ++D+  L +AA  G + T+Q  LS+GA +N     G +AL              L+ KGA  + L++ + TPLM+AA EGC A+V+ L+DA  DIN
Sbjct:   32 SSLMAEVNDD--LFKAAHTGSVETLQEALSSGAVLNAENLLGETALFYAIDECQTEAARVLINKGARLDFLTKLNYTPLMKAAAEGCTAIVQLLIDAKVDIN 131          
BLAST of mRNA_L-elsbetiae_contig785.16807.1 vs. uniprot
Match: A0A848X5F7_9BACT (Uncharacterized protein n=2 Tax=Gemmatimonadetes bacterium TaxID=2026742 RepID=A0A848X5F7_9BACT)

HSP 1 Score: 62.8 bits (151), Expect = 3.180e-9
Identity = 43/101 (42.57%), Postives = 54/101 (53.47%), Query Frame = 1
Query:   22 LACGMDDELPLIQAAGDGCLSTVQALLSAGADVNGRTDDGLSALHIDAHHGHDVIVSFLLQKGAPKNALSR-GDQTPLMRAAEEGCLAVVETLLDAGADIN 321
            LA     E P+  AA  G +  ++ LL  GADVN    DGL+ALH  A +     +  +L  GA    L+R G  TPL  AA  G  A+VE LL+AGAD N
Sbjct:   19 LAAAAPLESPVADAAQAGDVEQLRTLLRQGADVNAPQADGLTALHWAALNDDLGTLEVVLYAGATVRPLTRVGGYTPLHLAARSGHPAIVEALLEAGADPN 119          
BLAST of mRNA_L-elsbetiae_contig785.16807.1 vs. uniprot
Match: A0A6L8DXJ3_9BACT (Uncharacterized protein n=3 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A6L8DXJ3_9BACT)

HSP 1 Score: 62.4 bits (150), Expect = 4.250e-9
Identity = 40/91 (43.96%), Postives = 52/91 (57.14%), Query Frame = 1
Query:   49 PLIQAAGDGCLSTVQALLSAGADVNGRTDDGLSALHIDAHHGHDVIVSFLLQKGAPKNALSRGDQTPLMRAAEEGCLAVVETLLDAGADIN 321
            PL+ AA  G L++ + L +AGADVNG T DG SAL + A  G+  + + LL+ GA  NA   G   PL  A  +    + E LL AGAD N
Sbjct:  243 PLLFAARVGDLASARLLAAAGADVNGTTPDGASALAVAALSGNGAVGALLLEHGADPNAAG-GGYAPLHAAILQRDPDLAEALLAAGADPN 332          
BLAST of mRNA_L-elsbetiae_contig785.16807.1 vs. uniprot
Match: A0A381ZUQ3_9ZZZZ (Uncharacterized protein (Fragment) n=1 Tax=marine metagenome TaxID=408172 RepID=A0A381ZUQ3_9ZZZZ)

HSP 1 Score: 62.4 bits (150), Expect = 4.270e-9
Identity = 39/92 (42.39%), Postives = 52/92 (56.52%), Query Frame = 1
Query:   43 ELPLIQAAGDGCLSTVQALLSAGADVNGRTDDGLSALHIDAHHGHDVIVSFLLQKGAPKNALSR-GDQTPLMRAAEEGCLAVVETLLDAGAD 315
            E P+  AA  G ++ V+AL+  GAD +G   DG++ALH  A +    I   +L  GA  NA +R G  TPL  A+  G   VVE+LL  GAD
Sbjct:   30 ESPIADAAEQGDVAAVRALIRQGADPSGAQADGMTALHWSALNNEIEITEVVLFAGANANATTRLGGYTPLHIASRAGNAEVVESLLKTGAD 121          
BLAST of mRNA_L-elsbetiae_contig785.16807.1 vs. uniprot
Match: A0A8J6B4C6_ELECQ (Uncharacterized protein n=1 Tax=Eleutherodactylus coqui TaxID=57060 RepID=A0A8J6B4C6_ELECQ)

HSP 1 Score: 62.4 bits (150), Expect = 4.500e-9
Identity = 32/82 (39.02%), Postives = 47/82 (57.32%), Query Frame = 1
Query:   61 AAGDGCLSTVQALLSAGADVNGRTDDGLSALHIDAHHGHDVIVSFLLQKGAPKNALSRGDQTPLMRAAEEGCLAVVETLLDA 306
            AA  G    + A+LS   ++N +TDDG +ALH+     H   V  LLQ+GA ++++    +TPL  AA  GC++ V  L DA
Sbjct:   57 AASRGLADCISAILSHKVEINAKTDDGFTALHLAVSGCHPECVKLLLQRGAHEDSIDFHSRTPLHCAATSGCVSSVLLLCDA 138          
BLAST of mRNA_L-elsbetiae_contig785.16807.1 vs. uniprot
Match: A0A418AAW9_9LEPT (Uncharacterized protein n=6 Tax=Leptospira TaxID=171 RepID=A0A418AAW9_9LEPT)

HSP 1 Score: 60.5 bits (145), Expect = 8.470e-9
Identity = 41/99 (41.41%), Postives = 56/99 (56.57%), Query Frame = 1
Query:   43 ELPLIQAAGDGCLSTVQALLSAGAD-VNGRTDDGLSALHIDAHHGHDVIVSFLLQKGAP-----KNALSRGDQTPLMRAAEEGCLAVVETLLDAGADIN 321
            E  L +AA  G L  V+ ++S+ AD +N  + DG SALH+ A+ GH  +  FL+  GA      K+ LS G+ T L  A   G  A+VE LL+ GAD N
Sbjct:   59 ERNLFEAAALGDLEEVKKIVSSSADSINSFSKDGWSALHLAAYFGHLEVAKFLISSGADLGLTSKSKLSFGN-TALHSAVATGKKAIVELLLEKGADAN 156          
BLAST of mRNA_L-elsbetiae_contig785.16807.1 vs. uniprot
Match: A0A0M3K5B4_ANISI (ANK_REP_REGION domain-containing protein n=1 Tax=Anisakis simplex TaxID=6269 RepID=A0A0M3K5B4_ANISI)

HSP 1 Score: 61.2 bits (147), Expect = 1.140e-8
Identity = 33/98 (33.67%), Postives = 52/98 (53.06%), Query Frame = 1
Query:   34 MDDELPLIQAAGDGCLSTVQALLSAGADVNGRTDDGLSALHIDAHHGHDVIVSFLLQKGAPK--NALSRGDQTPLMRAAEEGCLAVVETLLDAGADIN 321
            +D+  P++ AA +G L  + +L+ AG D N    D L+A+H  A HGH+ ++S L++       +A  R   TPL  +   G       LL++GAD N
Sbjct:  174 LDERTPILWAASNGNLEAMISLIQAGGDRNAVDRDRLNAMHCAASHGHEHVLSHLIETSDQSIIDATDRNGDTPLFYSVTLGHFECTRLLLNSGADAN 271          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig785.16807.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A800F9R1_9BACT2.730e-1349.45Uncharacterized protein n=1 Tax=Gemmatimonadetes b... [more]
UPI001F4FF19D1.650e-1045.05poly [ADP-ribose] polymerase tankyrase-1-like n=2 ... [more]
H5WQM9_9BURK2.080e-942.16Ankyrin repeat-containing protein n=1 Tax=Burkhold... [more]
A0A3N9NS20_9BACT3.010e-938.24TonB family protein n=1 Tax=candidate division KSB... [more]
A0A848X5F7_9BACT3.180e-942.57Uncharacterized protein n=2 Tax=Gemmatimonadetes b... [more]
A0A6L8DXJ3_9BACT4.250e-943.96Uncharacterized protein n=3 Tax=Acidobacteria bact... [more]
A0A381ZUQ3_9ZZZZ4.270e-942.39Uncharacterized protein (Fragment) n=1 Tax=marine ... [more]
A0A8J6B4C6_ELECQ4.500e-939.02Uncharacterized protein n=1 Tax=Eleutherodactylus ... [more]
A0A418AAW9_9LEPT8.470e-941.41Uncharacterized protein n=6 Tax=Leptospira TaxID=1... [more]
A0A0M3K5B4_ANISI1.140e-833.67ANK_REP_REGION domain-containing protein n=1 Tax=A... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig785contigL-elsbetiae_contig785:29561..29881 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeOpisthokonta
Seed ortholog score68.2
Seed ortholog evalue2.7e-09
Seed eggNOG ortholog946362.XP_004992668.1
KEGG koko:K20175
Hectar predicted targeting categoryother localisation
EggNOG free text desc.ankyrin repeat
EggNOG OGs38D3T@33154,COG0666@1,KOG2319@2759
COG Functional cat.U
Best tax levelOpisthokonta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Exons1
Model size321
Cds size321
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816869.4085422-CDS-L-elsbetiae_contig785:29560..298811622816869.4085422-CDS-L-elsbetiae_contig785:29560..29881Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig785 29561..29881 -
1691683874.650696-CDS-L-elsbetiae_contig785:29560..298811691683874.650696-CDS-L-elsbetiae_contig785:29560..29881Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig785 29561..29881 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig785.16807.1prot_L-elsbetiae_contig785.16807.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig785 29561..29881 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig785.16807.1

>prot_L-elsbetiae_contig785.16807.1 ID=prot_L-elsbetiae_contig785.16807.1|Name=mRNA_L-elsbetiae_contig785.16807.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=107bp
LTLLPSFLACGMDDELPLIQAAGDGCLSTVQALLSAGADVNGRTDDGLSA
LHIDAHHGHDVIVSFLLQKGAPKNALSRGDQTPLMRAAEEGCLAVVETLL
DAGADIN
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mRNA from alignment at L-elsbetiae_contig785:29561..29881-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig785.16807.1 ID=mRNA_L-elsbetiae_contig785.16807.1|Name=mRNA_L-elsbetiae_contig785.16807.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=321bp|location=Sequence derived from alignment at L-elsbetiae_contig785:29561..29881- (Laminarionema elsbetiae ELsaHSoW15)
CTGACACTCCTACCCTCTTTTCTTGCGTGCGGGATGGACGATGAGCTGCC ACTGATACAGGCCGCGGGCGATGGCTGCTTGTCAACAGTGCAGGCTCTGT TATCCGCTGGTGCCGATGTGAATGGCCGCACAGACGATGGTCTCTCGGCT CTCCACATTGATGCGCATCACGGACACGACGTGATAGTTTCTTTCCTCTT GCAAAAGGGAGCGCCGAAAAACGCACTCAGTCGGGGAGACCAAACACCAC TGATGCGGGCCGCTGAAGAAGGCTGCTTGGCTGTGGTAGAGACGCTGTTG GACGCCGGCGCCGACATCAAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig785:29561..29881-

>mRNA_L-elsbetiae_contig785.16807.1 ID=mRNA_L-elsbetiae_contig785.16807.1|Name=mRNA_L-elsbetiae_contig785.16807.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=642bp|location=Sequence derived from alignment at L-elsbetiae_contig785:29561..29881- (Laminarionema elsbetiae ELsaHSoW15)
CTGACACTCCTACCCTCTTTTCTTGCGTGCGGGATGGACGATGAGCTGCC
ACTGATACAGGCCGCGGGCGATGGCTGCTTGTCAACAGTGCAGGCTCTGT
TATCCGCTGGTGCCGATGTGAATGGCCGCACAGACGATGGTCTCTCGGCT
CTCCACATTGATGCGCATCACGGACACGACGTGATAGTTTCTTTCCTCTT
GCAAAAGGGAGCGCCGAAAAACGCACTCAGTCGGGGAGACCAAACACCAC
TGATGCGGGCCGCTGAAGAAGGCTGCTTGGCTGTGGTAGAGACGCTGTTG
GACGCCGGCGCCGACATCAACCTGACACTCCTACCCTCTTTTCTTGCGTG
CGGGATGGACGATGAGCTGCCACTGATACAGGCCGCGGGCGATGGCTGCT
TGTCAACAGTGCAGGCTCTGTTATCCGCTGGTGCCGATGTGAATGGCCGC
ACAGACGATGGTCTCTCGGCTCTCCACATTGATGCGCATCACGGACACGA
CGTGATAGTTTCTTTCCTCTTGCAAAAGGGAGCGCCGAAAAACGCACTCA
GTCGGGGAGACCAAACACCACTGATGCGGGCCGCTGAAGAAGGCTGCTTG
GCTGTGGTAGAGACGCTGTTGGACGCCGGCGCCGACATCAAC
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