mRNA_L-elsbetiae_contig783.16789.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig783.16789.1
Unique NamemRNA_L-elsbetiae_contig783.16789.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig783.16789.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig783contigL-elsbetiae_contig783:20740..21897 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size448
Cds size444
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816867.4402893-CDS-L-elsbetiae_contig783:20741..211631622816867.4402893-CDS-L-elsbetiae_contig783:20741..21163Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig783 20742..21163 -
1691683873.194151-CDS-L-elsbetiae_contig783:20741..211631691683873.194151-CDS-L-elsbetiae_contig783:20741..21163Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig783 20742..21163 -
1622816867.4520643-CDS-L-elsbetiae_contig783:21875..218971622816867.4520643-CDS-L-elsbetiae_contig783:21875..21897Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig783 21876..21897 -
1691683873.203558-CDS-L-elsbetiae_contig783:21875..218971691683873.203558-CDS-L-elsbetiae_contig783:21875..21897Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig783 21876..21897 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig783.16789.1prot_L-elsbetiae_contig783.16789.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig783 20742..21897 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig783.16789.1

>prot_L-elsbetiae_contig783.16789.1 ID=prot_L-elsbetiae_contig783.16789.1|Name=mRNA_L-elsbetiae_contig783.16789.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=148bp
VGASLSEGRNLSPGAPPFPRAAETPPPLGGFVYPAAPLPLPRARLRRRRQ
VGRTDAFCSGGGPGSLGNASNFGRDVLRETRPLQAAPRMGAVTMAGGEGG
ARGRAFGAAEGERRARRRQQRRPKLSKGVQGASQPAAECSPGGGRLDR
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mRNA from alignment at L-elsbetiae_contig783:20740..21897-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig783.16789.1 ID=mRNA_L-elsbetiae_contig783.16789.1|Name=mRNA_L-elsbetiae_contig783.16789.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1158bp|location=Sequence derived from alignment at L-elsbetiae_contig783:20740..21897- (Laminarionema elsbetiae ELsaHSoW15)
GTTGGGGCTTCTCTTTCGGAAGGTGAGAACGGGGTTGCATGTGCCGTGAA
GGCGTACCTTGAGTGCAGTGGGCAGAGCCGGCACAGTGGAAGCGATCTCT
GATTTTTCTCTGCTGTTGGTGGTGTCGTGGGTAGTCCGGTTGGTGAGCCT
CCTACAATCGCTGCTATATGGGATTGCAGACGCGGCCAAAGGCTTCAACA
TGCAAGTTCCTGCCGACATCCATCCTCTCGTAGGTACATTGCTTGGGTTA
GGACATCGCACCAGAAAGGGGTTGGCCGGCTGACGGCCCGCTCCCATTGA
ACAGTTTCTCTCCTTCAACGCGGCTCTCCACACAGCGTAGAAGCTTTACA
CATACAGCGCAGCTTTGCAGAAAAAAAAAACTTGAATCATGTGTGACCTT
CTCAACCATGTGGGCATGTCAACACTGGCGTACTCATCCGTATTGTAGCA
GTATCTCTCCCCAATGCTTACCGTGTTATCAGCATTCCTCAAAGCCGTCA
ACCGCTGGTTTTCTGTGGTAGACGGCTACCCACCAACACAGGTCCACGGT
TTCACGTGTGTAGACAACATGGTAGACAACGGGTTAGTCTCCACATGCCC
GTTTTTTTCGCGAAAGATCGCGTTCGGCGATTCCTCTGCAGCAACTGCTG
CCGTCCCTTTTTCGTGTATCCGTCCGCACTATCCCTCCAACACCACGTTA
CGCCGTACTCTTGGCGCTCCTCGGAAAACAGCAGGGCGAAACTTGTCTCC
AGGCGCACCGCCGTTTCCGCGAGCGGCAGAGACGCCCCCCCCCCTCGGGG
GCTTCGTGTACCCCGCCGCCCCTCTCCCGCTGCCCCGGGCACGGTTAAGA
CGAAGGCGACAAGTCGGCCGCACCGATGCATTCTGCAGCGGTGGTGGTCC
CGGGTCTCTCGGCAATGCCAGCAACTTTGGACGGGATGTATTAAGAGAAA
CGCGGCCGCTGCAGGCGGCACCGCGAATGGGAGCGGTCACAATGGCGGGC
GGGGAGGGCGGCGCGAGGGGCCGCGCCTTCGGAGCGGCAGAGGGAGAGCG
CCGCGCCCGGCGGCGGCAACAGAGACGCCCCAAGCTCTCGAAGGGCGTTC
AGGGCGCGTCGCAACCGGCGGCAGAGTGTTCCCCTGGGGGGGGGCGCCTT
GATCGGGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig783:20740..21897-

>mRNA_L-elsbetiae_contig783.16789.1 ID=mRNA_L-elsbetiae_contig783.16789.1|Name=mRNA_L-elsbetiae_contig783.16789.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=888bp|location=Sequence derived from alignment at L-elsbetiae_contig783:20740..21897- (Laminarionema elsbetiae ELsaHSoW15)
GTTGGGGCTTCTCTTTCGGAAGGTTGGGGCTTCTCTTTCGGAAGGGCGAA
ACTTGTCTCCAGGCGCACCGCCGTTTCCGCGAGCGGCAGAGACGCCCCCC
CCCCTCGGGGGCTTCGTGTACCCCGCCGCCCCTCTCCCGCTGCCCCGGGC
ACGGTTAAGACGAAGGCGACAAGTCGGCCGCACCGATGCATTCTGCAGCG
GTGGTGGTCCCGGGTCTCTCGGCAATGCCAGCAACTTTGGACGGGATGTA
TTAAGAGAAACGCGGCCGCTGCAGGCGGCACCGCGAATGGGAGCGGTCAC
AATGGCGGGCGGGGAGGGCGGCGCGAGGGGCCGCGCCTTCGGAGCGGCAG
AGGGAGAGCGCCGCGCCCGGCGGCGGCAACAGAGACGCCCCAAGCTCTCG
AAGGGCGTTCAGGGCGCGTCGCAACCGGCGGCAGAGTGTTCCCCTGGGGG
GGGGCGCCTTGATCGGGGCGAAACTTGTCTCCAGGCGCACCGCCGTTTCC
GCGAGCGGCAGAGACGCCCCCCCCCCTCGGGGGCTTCGTGTACCCCGCCG
CCCCTCTCCCGCTGCCCCGGGCACGGTTAAGACGAAGGCGACAAGTCGGC
CGCACCGATGCATTCTGCAGCGGTGGTGGTCCCGGGTCTCTCGGCAATGC
CAGCAACTTTGGACGGGATGTATTAAGAGAAACGCGGCCGCTGCAGGCGG
CACCGCGAATGGGAGCGGTCACAATGGCGGGCGGGGAGGGCGGCGCGAGG
GGCCGCGCCTTCGGAGCGGCAGAGGGAGAGCGCCGCGCCCGGCGGCGGCA
ACAGAGACGCCCCAAGCTCTCGAAGGGCGTTCAGGGCGCGTCGCAACCGG
CGGCAGAGTGTTCCCCTGGGGGGGGGCGCCTTGATCGG
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