mRNA_L-elsbetiae_contig783.16786.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig783.16786.1
Unique NamemRNA_L-elsbetiae_contig783.16786.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig783.16786.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig783contigL-elsbetiae_contig783:5719..6247 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size529
Cds size456
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig783.16786.1prot_L-elsbetiae_contig783.16786.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig783 5749..6204 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816867.5197256-UTR-L-elsbetiae_contig783:5718..57481622816867.5197256-UTR-L-elsbetiae_contig783:5718..5748Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig783 5719..5748 +
1691683873.227876-UTR-L-elsbetiae_contig783:5718..57481691683873.227876-UTR-L-elsbetiae_contig783:5718..5748Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig783 5719..5748 +
1622816867.5433292-UTR-L-elsbetiae_contig783:6204..62471622816867.5433292-UTR-L-elsbetiae_contig783:6204..6247Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig783 6205..6247 +
1691683873.2500854-UTR-L-elsbetiae_contig783:6204..62471691683873.2500854-UTR-L-elsbetiae_contig783:6204..6247Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig783 6205..6247 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816867.5304484-CDS-L-elsbetiae_contig783:5748..62041622816867.5304484-CDS-L-elsbetiae_contig783:5748..6204Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig783 5749..6204 +
1691683873.2398374-CDS-L-elsbetiae_contig783:5748..62041691683873.2398374-CDS-L-elsbetiae_contig783:5748..6204Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig783 5749..6204 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig783.16786.1

>prot_L-elsbetiae_contig783.16786.1 ID=prot_L-elsbetiae_contig783.16786.1|Name=mRNA_L-elsbetiae_contig783.16786.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=152bp
MMYGVVVTLAYTGIYLYWGVNKRLGTTVCSSDERRLSVFFMLNASRHFGS
IRPVASRQDTHVGIQHGGVSRQRPVSFVDGSFSLCGSFVQCSLDQRARVL
SVPFGRIRVCCRYTCCPARNTLALLGCQDRTRGCIPPVGDVGVFSFVFYL
A*
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mRNA from alignment at L-elsbetiae_contig783:5719..6247+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig783.16786.1 ID=mRNA_L-elsbetiae_contig783.16786.1|Name=mRNA_L-elsbetiae_contig783.16786.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=529bp|location=Sequence derived from alignment at L-elsbetiae_contig783:5719..6247+ (Laminarionema elsbetiae ELsaHSoW15)
GGGCGGTTTCAGCGTTTGTGTCTTCGTTGTATGATGTACGGAGTAGTAGT
TACGTTGGCATATACTGGTATTTATTTATATTGGGGTGTTAACAAAAGGC
TGGGCACTACTGTATGTAGCAGTGACGAGAGGAGACTCTCCGTGTTTTTC
ATGCTTAATGCTTCGCGCCATTTTGGGTCGATACGACCAGTCGCGAGTCG
CCAAGATACTCATGTTGGGATTCAGCATGGCGGTGTAAGCCGCCAAAGGC
CTGTTTCTTTCGTGGACGGGTCCTTCTCCCTGTGTGGGTCGTTTGTGCAA
TGCTCTCTCGATCAACGCGCACGCGTGTTGTCTGTTCCTTTTGGGCGGAT
TCGTGTGTGTTGTAGATATACATGTTGTCCGGCACGGAACACCCTGGCAT
TGTTAGGGTGCCAAGATAGAACCAGGGGGTGTATACCCCCGGTTGGTGAT
GTTGGCGTGTTCAGTTTTGTATTTTACCTCGCATAGCGTGTAGAGGGGAG
GTAGGGGCTCCACACTATTTGTCTTTGAT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig783:5719..6247+

>mRNA_L-elsbetiae_contig783.16786.1 ID=mRNA_L-elsbetiae_contig783.16786.1|Name=mRNA_L-elsbetiae_contig783.16786.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=912bp|location=Sequence derived from alignment at L-elsbetiae_contig783:5719..6247+ (Laminarionema elsbetiae ELsaHSoW15)
ATGATGTACGGAGTAGTAGTTACGTTGGCATATACTGGTATTTATTTATA
TTGGGGTGTTAACAAAAGGCTGGGCACTACTGTATGTAGCAGTGACGAGA
GGAGACTCTCCGTGTTTTTCATGCTTAATGCTTCGCGCCATTTTGGGTCG
ATACGACCAGTCGCGAGTCGCCAAGATACTCATGTTGGGATTCAGCATGG
CGGTGTAAGCCGCCAAAGGCCTGTTTCTTTCGTGGACGGGTCCTTCTCCC
TGTGTGGGTCGTTTGTGCAATGCTCTCTCGATCAACGCGCACGCGTGTTG
TCTGTTCCTTTTGGGCGGATTCGTGTGTGTTGTAGATATACATGTTGTCC
GGCACGGAACACCCTGGCATTGTTAGGGTGCCAAGATAGAACCAGGGGGT
GTATACCCCCGGTTGGTGATGTTGGCGTGTTCAGTTTTGTATTTTACCTC
GCATAGATGATGTACGGAGTAGTAGTTACGTTGGCATATACTGGTATTTA
TTTATATTGGGGTGTTAACAAAAGGCTGGGCACTACTGTATGTAGCAGTG
ACGAGAGGAGACTCTCCGTGTTTTTCATGCTTAATGCTTCGCGCCATTTT
GGGTCGATACGACCAGTCGCGAGTCGCCAAGATACTCATGTTGGGATTCA
GCATGGCGGTGTAAGCCGCCAAAGGCCTGTTTCTTTCGTGGACGGGTCCT
TCTCCCTGTGTGGGTCGTTTGTGCAATGCTCTCTCGATCAACGCGCACGC
GTGTTGTCTGTTCCTTTTGGGCGGATTCGTGTGTGTTGTAGATATACATG
TTGTCCGGCACGGAACACCCTGGCATTGTTAGGGTGCCAAGATAGAACCA
GGGGGTGTATACCCCCGGTTGGTGATGTTGGCGTGTTCAGTTTTGTATTT
TACCTCGCATAG
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