mRNA_L-elsbetiae_contig7822.16778.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7822.16778.1
Unique NamemRNA_L-elsbetiae_contig7822.16778.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7822.16778.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7822contigL-elsbetiae_contig7822:6208..7033 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size254
Cds size252
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7822.16778.1prot_L-elsbetiae_contig7822.16778.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7822 6208..7033 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816866.8265646-CDS-L-elsbetiae_contig7822:6207..62731622816866.8265646-CDS-L-elsbetiae_contig7822:6207..6273Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7822 6208..6273 -
1691683872.7755115-CDS-L-elsbetiae_contig7822:6207..62731691683872.7755115-CDS-L-elsbetiae_contig7822:6207..6273Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7822 6208..6273 -
1622816866.8398197-CDS-L-elsbetiae_contig7822:6555..66271622816866.8398197-CDS-L-elsbetiae_contig7822:6555..6627Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7822 6556..6627 -
1691683872.7879455-CDS-L-elsbetiae_contig7822:6555..66271691683872.7879455-CDS-L-elsbetiae_contig7822:6555..6627Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7822 6556..6627 -
1622816866.8503828-CDS-L-elsbetiae_contig7822:6919..70331622816866.8503828-CDS-L-elsbetiae_contig7822:6919..7033Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7822 6920..7033 -
1691683872.800162-CDS-L-elsbetiae_contig7822:6919..70331691683872.800162-CDS-L-elsbetiae_contig7822:6919..7033Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7822 6920..7033 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7822.16778.1

>prot_L-elsbetiae_contig7822.16778.1 ID=prot_L-elsbetiae_contig7822.16778.1|Name=mRNA_L-elsbetiae_contig7822.16778.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=84bp
VNQCAGEELYNLNGEVKSRRCGRPAMRGAFSCSLHGPQVNSAAGGFSTAD
AVDVDGAMHGQEALPPLQKSVDIETPKATIDSLG
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mRNA from alignment at L-elsbetiae_contig7822:6208..7033-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7822.16778.1 ID=mRNA_L-elsbetiae_contig7822.16778.1|Name=mRNA_L-elsbetiae_contig7822.16778.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=826bp|location=Sequence derived from alignment at L-elsbetiae_contig7822:6208..7033- (Laminarionema elsbetiae ELsaHSoW15)
GTAAACCAATGCGCTGGCGAAGAGCTATACAACCTGAACGGGGAGGTCAA
GTCTCGCCGGTGCGGACGCCCAGCTATGCGCGGCGCCTTCTCGTGCTCTC
TCCACGGCCCACAGGTAAGGTACCTTTGGCGAATTTATTTTTTTTGGTGA
GCATGTGGTTGGTTGTCGTGGGTTCCGCGTTTTTTGTTTTGAAGAGAGTT
TTGCTCTCTCTCTCTCCCTCCTGCGACTCTGTGTCCTCGTGCAAGTCGAG
TGCCGAGAAACGCTTGGTGACCCCTGCTTCGGCGTGAAACATCTTTGTGC
TGCGGGCGGAGTAAGCGAATACTGGTCACAAAAACAAGAGTAGTACTACG
CATGACGGACAGCCACTCAACAAGGCTGACAATGACACAAAAATTCCCAC
CTTCAGGTGAACTCGGCTGCTGGTGGCTTCTCCACAGCCGATGCCGTGGA
TGTTGATGGCGCCATGCACGGGCAGGAGGTGACATTGCGTTCCTGTGTGT
TCGTCCGGTATTGTTTGTGATGCATGCTGTTTGGTTGTTGCTTTGCTGGC
CCTTCGGGTCCATTTCATTTTTCGTGTACCTTTTCCTGGGTATAAATTAG
CCTGTCACCACGAGGAATCAACATACATACATTGATTCGGCGGCGACGCA
TAAGTTCGGCGTCCATTCTTCAGCATAAGTGGAGGCGCTCTATTCTCAAT
CCACACCACCAACTGTCTGTCGTGCGCCTTGCTTGCATTCGCGGTCGCTA
ATGCTTCCAGGCGCTGCCGCCGCTGCAGAAGAGCGTCGACATCGAGACAC
CCAAGGCCACTATCGACAGCTTGGGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7822:6208..7033-

>mRNA_L-elsbetiae_contig7822.16778.1 ID=mRNA_L-elsbetiae_contig7822.16778.1|Name=mRNA_L-elsbetiae_contig7822.16778.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=504bp|location=Sequence derived from alignment at L-elsbetiae_contig7822:6208..7033- (Laminarionema elsbetiae ELsaHSoW15)
GTAAACCAATGCGCTGGCGAAGAGCTATACAACCTGAACGGGGAGGTCAA
GTCTCGCCGGTGCGGACGCCCAGCTATGCGCGGCGCCTTCTCGTGCTCTC
TCCACGGCCCACAGGTAAACCAATGCGCTGGCGAAGAGCTATACAACCTG
AACGGGGAGGTCAAGTCTCGCCGGTGCGGACGCCCAGCTATGCGCGGCGC
CTTCTCGTGCTCTCTCCACGGCCCACAGGTGAACTCGGCTGCTGGTGGCT
TCTCCACAGCCGATGCCGTGGATGTTGATGGCGCCATGCACGGGCAGGAG
GTGAACTCGGCTGCTGGTGGCTTCTCCACAGCCGATGCCGTGGATGTTGA
TGGCGCCATGCACGGGCAGGAGGCGCTGCCGCCGCTGCAGAAGAGCGTCG
ACATCGAGACACCCAAGGCCACTATCGACAGCTTGGGGGCGCTGCCGCCG
CTGCAGAAGAGCGTCGACATCGAGACACCCAAGGCCACTATCGACAGCTT
GGGG
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