mRNA_L-elsbetiae_contig7822.16777.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7822.16777.1
Unique NamemRNA_L-elsbetiae_contig7822.16777.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7822.16777.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7822contigL-elsbetiae_contig7822:4393..5298 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size423
Cds size423
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816866.782309-CDS-L-elsbetiae_contig7822:4392..45901622816866.782309-CDS-L-elsbetiae_contig7822:4392..4590Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7822 4393..4590 -
1691683872.7558687-CDS-L-elsbetiae_contig7822:4392..45901691683872.7558687-CDS-L-elsbetiae_contig7822:4392..4590Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7822 4393..4590 -
1622816866.7950726-CDS-L-elsbetiae_contig7822:5073..52981622816866.7950726-CDS-L-elsbetiae_contig7822:5073..5298Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7822 5074..5298 -
1691683872.7656174-CDS-L-elsbetiae_contig7822:5073..52981691683872.7656174-CDS-L-elsbetiae_contig7822:5073..5298Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7822 5074..5298 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7822.16777.1prot_L-elsbetiae_contig7822.16777.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7822 4393..5298 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7822.16777.1

>prot_L-elsbetiae_contig7822.16777.1 ID=prot_L-elsbetiae_contig7822.16777.1|Name=mRNA_L-elsbetiae_contig7822.16777.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=141bp
IDRPYAQGVRNVTGPWGETAKKCAWAFGGIPLPTVEARKEMLQLKKQVEE
DSATAPWHSGKREDDTDSSLRRHTQGLEACDTGRVQGETKPNKKVPVRAP
LSAKSFESSMAAWCEKKADEPKKKRAFQQQQRMYEAAEADK
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mRNA from alignment at L-elsbetiae_contig7822:4393..5298-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7822.16777.1 ID=mRNA_L-elsbetiae_contig7822.16777.1|Name=mRNA_L-elsbetiae_contig7822.16777.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=906bp|location=Sequence derived from alignment at L-elsbetiae_contig7822:4393..5298- (Laminarionema elsbetiae ELsaHSoW15)
ATCGATAGGCCCTATGCCCAGGGCGTGCGCAACGTCACAGGACCCTGGGG
CGAGACGGCGAAGAAGTGTGCCTGGGCTTTCGGCGGGATCCCTCTTCCAA
CCGTTGAGGCCCGCAAGGAGATGCTTCAGCTGAAGAAGCAGGTTGAAGAA
GACAGCGCGACGGCTCCGTGGCACTCCGGAAAGAGGGAGGACGACACCGA
CTCGAGCCTTCGCCGCCACACCCAGGTGATGGCACAGGCGTGGGAGGAGC
ACTTGGTCAACGACAGGGCCGCGAAGGGCAAGAAGACCGCGAGGGATAAA
TGTGCAGCGCAGGCTTCGTATGAGATACGTACCCCTCCCCTCCTCTTGTT
TTGTTTCTACCGTTGCAGTACAAATGTTTTTTTACTTTCCCTCGGGCGAT
GCCTTCCAACGGGCTTTGTAAGCGCTAGGTTTGGGGTACGTGTAGGTGTT
AATGTGTTGGTTCGTGGGGCGCAAAATCTCCTTTTCTTAGCGCGCGGCAA
TCACTGCAGTGCTCCTAAATTGACTGACGCCATCGAAAAAACGGTAGGCA
CGCATATATATCCAGGTACCACCGCACGTATAACCAGTAGCCGTACTCCA
GTGCTCACGACCGAAGTGGGAAGTGAATGTGGTGTTGAGATTTAATCCTG
ATTTGTCTCCCACCCCCTCCCCCCTCCCGCACTTCTATGCTTATGCGGTG
CAAATCAGGGACTGGAGGCTTGCGACACAGGCCGTGTTCAAGGAGAGACC
AAGCCGAACAAGAAAGTCCCCGTCCGCGCTCCTCTCTCCGCCAAGTCCTT
CGAGAGCAGCATGGCTGCCTGGTGTGAGAAGAAAGCTGACGAACCCAAGA
AGAAGCGAGCCTTTCAACAGCAGCAGCGGATGTACGAGGCGGCGGAAGCC
GACAAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7822:4393..5298-

>mRNA_L-elsbetiae_contig7822.16777.1 ID=mRNA_L-elsbetiae_contig7822.16777.1|Name=mRNA_L-elsbetiae_contig7822.16777.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=846bp|location=Sequence derived from alignment at L-elsbetiae_contig7822:4393..5298- (Laminarionema elsbetiae ELsaHSoW15)
ATCGATAGGCCCTATGCCCAGGGCGTGCGCAACGTCACAGGACCCTGGGG
CGAGACGGCGAAGAAGTGTGCCTGGGCTTTCGGCGGGATCCCTCTTCCAA
CCGTTGAGGCCCGCAAGGAGATGCTTCAGCTGAAGAAGCAGGTTGAAGAA
GACAGCGCGACGGCTCCGTGGCACTCCGGAAAGAGGGAGGACGACACCGA
CTCGAGCCTTCGCCGCCACACCCAGATCGATAGGCCCTATGCCCAGGGCG
TGCGCAACGTCACAGGACCCTGGGGCGAGACGGCGAAGAAGTGTGCCTGG
GCTTTCGGCGGGATCCCTCTTCCAACCGTTGAGGCCCGCAAGGAGATGCT
TCAGCTGAAGAAGCAGGTTGAAGAAGACAGCGCGACGGCTCCGTGGCACT
CCGGAAAGAGGGAGGACGACACCGACTCGAGCCTTCGCCGCCACACCCAG
GGACTGGAGGCTTGCGACACAGGCCGTGTTCAAGGAGAGACCAAGCCGAA
CAAGAAAGTCCCCGTCCGCGCTCCTCTCTCCGCCAAGTCCTTCGAGAGCA
GCATGGCTGCCTGGTGTGAGAAGAAAGCTGACGAACCCAAGAAGAAGCGA
GCCTTTCAACAGCAGCAGCGGATGTACGAGGCGGCGGAAGCCGACAAGGG
ACTGGAGGCTTGCGACACAGGCCGTGTTCAAGGAGAGACCAAGCCGAACA
AGAAAGTCCCCGTCCGCGCTCCTCTCTCCGCCAAGTCCTTCGAGAGCAGC
ATGGCTGCCTGGTGTGAGAAGAAAGCTGACGAACCCAAGAAGAAGCGAGC
CTTTCAACAGCAGCAGCGGATGTACGAGGCGGCGGAAGCCGACAAG
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