mRNA_L-elsbetiae_contig782.16771.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig782.16771.1 vs. uniprot
Match: A0A6H5LIJ3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LIJ3_9PHAE) HSP 1 Score: 131 bits (329), Expect = 3.210e-28 Identity = 65/112 (58.04%), Postives = 81/112 (72.32%), Query Frame = 1 Query: 118 KSRCLDAFIVALNQACQGGTGRWYTSTLQLQLASLELCRACRSVPALHVRVDDRTPRTLCSPRKTHIAELDTRGSEARRSSRVPAMQVLRLTWALSDSRMMPSAAIEQWGWS 453 ++RCLDAF++AL+QAC+GG RWY STL+LQL SL+LCRACR+ LHV VDD+TPR+L S R T +TR SSRVP ++ LRLTWALS ++ AAIE W WS Sbjct: 8 RTRCLDAFVIALSQACEGGEKRWYASTLELQLTSLDLCRACRTTSILHVHVDDQTPRSLWSSR-TAQTRPNTRSWNLHISSRVPVVRALRLTWALSMEALLRKAAIELWTWS 118
BLAST of mRNA_L-elsbetiae_contig782.16771.1 vs. uniprot
Match: D7G7F9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7F9_ECTSI) HSP 1 Score: 119 bits (299), Expect = 1.010e-27 Identity = 62/114 (54.39%), Postives = 77/114 (67.54%), Query Frame = 1 Query: 103 MDANGKSRCLDAFIVALNQACQGGTGRWYTSTLQLQLASLELCRACRSVPALHVRVDDRTPRTLCSPRKTHIAELDTRGSEARRSSRVPAMQVLRLTWALSDSRMMPSAAIEQW 444 M G +R DAF +AL+QAC+GG RWYTST +LQL SL++CRACRS P LHVRV TP +L SP T A +T+ S+ R SRVP ++ LRLTWA S ++ AAIE W Sbjct: 1 MPTEGYTRSFDAFAIALSQACEGGEKRWYTSTTELQLGSLDICRACRSTPTLHVRVTGGTPTSLWSP-PTVQALPNTQSSKVRVVSRVPVVRALRLTWAFSMETLVQRAAIELW 113
BLAST of mRNA_L-elsbetiae_contig782.16771.1 vs. uniprot
Match: A0A6H5KLV1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLV1_9PHAE) HSP 1 Score: 120 bits (300), Expect = 1.410e-25 Identity = 63/108 (58.33%), Postives = 75/108 (69.44%), Query Frame = 1 Query: 115 GKSRCLDAFIVALNQACQGGTGRWYTSTLQLQLASLELCRACRSVPALHVRVDDRTPRTLCSPRKTHIAELDTRGSEARRSSRVPAMQVLRLTWALSDSRMMPSAAIE 438 G+S CL AFIVALNQ C G RWY STL+LQL SLE C ACR VP LHVRVD +TPR+L SP K+H A R EA S+RVPA+Q LTWAL ++ ++A+E Sbjct: 13 GRSECLRAFIVALNQTCNGQEKRWYASTLELQLVSLEFCGACRRVPTLHVRVDRQTPRSLWSPCKSH-ATTKKRSREACVSNRVPAVQASGLTWALDMEVLLQTSAVE 119
BLAST of mRNA_L-elsbetiae_contig782.16771.1 vs. uniprot
Match: A0A6H5KNI6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNI6_9PHAE) HSP 1 Score: 113 bits (282), Expect = 3.180e-22 Identity = 72/177 (40.68%), Postives = 86/177 (48.59%), Query Frame = 1 Query: 103 MDANGKSRCLDAFIVALNQACQGGTGRWYTSTLQLQLASLELCRACRSVPALHVRVDDRTPRTLCSPRKTHIAELDTRGSEARRSSRVPAMQVLRLTWAL-------------------------SDSRMMPSAAIEQ-----------------WGWSLQEMSFGTDFNQCIAAVA 507 M G S+CLDAF+VALNQAC G RWY STL+LQL SLE+C ACR V LHVRV +TP +L P + H + R + SSRVP +Q LTWAL S + + SA Q W SLQ++SFG FNQ I VA Sbjct: 1 MTTKGNSKCLDAFVVALNQACDGQEKRWYVSTLELQLVSLEVCGACRRVQTLHVRVKPQTPPSLWFPSQNHTTT-NNRSPKVCISSRVPVVQAFGLTWALPMGVLQQRSATEVRSGSGCRRANTHSSAASLESAVWPQRLKRMVFESDMTVNTASWPASLQQLSFGCGFNQAIVGVA 176
BLAST of mRNA_L-elsbetiae_contig782.16771.1 vs. uniprot
Match: D7G0Z9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0Z9_ECTSI) HSP 1 Score: 101 bits (251), Expect = 1.200e-21 Identity = 47/67 (70.15%), Postives = 52/67 (77.61%), Query Frame = 1 Query: 118 KSRCLDAFIVALNQACQGGTGRWYTSTLQLQLASLELCRACRSVPALHVRVDDRTPRTLCSPRKTHI 318 +S+CLDAF+VALNQ C G RWY STL+LQL SLE C ACR VP LHVRVD RTPR+L SPR T I Sbjct: 38 RSKCLDAFVVALNQTCDGQEKRWYASTLELQLVSLEFCGACRHVPTLHVRVDRRTPRSLWSPRTTPI 104
BLAST of mRNA_L-elsbetiae_contig782.16771.1 vs. uniprot
Match: A0A6H5L1V9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1V9_9PHAE) HSP 1 Score: 108 bits (271), Expect = 1.420e-21 Identity = 60/114 (52.63%), Postives = 70/114 (61.40%), Query Frame = 1 Query: 103 MDANGKSRCLDAFIVALNQACQGGTGRWYTSTLQLQLASLELCRACRSVPALHVRVDDRTPRTLCSPRKTHIAELDTRGSEARRSSRVPAMQVLRLTWALSDSRMMPSAAIEQW 444 M + + RCLDAF+VAL+Q +GG RWYTSTLQLQLASLE C ACRS P LHV VD TP TL S L A S+RVPA+Q + LTWA + SA+ E W Sbjct: 1 MTSEAQRRCLDAFVVALSQCYEGGEKRWYTSTLQLQLASLEFCGACRSTPMLHVYVDAETPPTLWS--------LGQANPTAGTSTRVPAVQAVGLTWARPTESPLGSASSELW 106
BLAST of mRNA_L-elsbetiae_contig782.16771.1 vs. uniprot
Match: A0A6H5KXX4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXX4_9PHAE) HSP 1 Score: 105 bits (263), Expect = 3.130e-20 Identity = 62/141 (43.97%), Postives = 76/141 (53.90%), Query Frame = 1 Query: 103 MDANGKSRCLDAFIVALNQACQGGTGRWYTSTLQLQLASLELCRACRSVPALHVRVDDRTPRTLCSPR----KTHIAELDTRGS-----------------------EARRSSRVPAMQVLRLTWALSDSRMMPSAAIEQW 444 MD+ G SR DA I+A++QA +G RWYTSTL+L+LASLE CRACR VP +HVRVD TP +L SP + H TR +AR SSRVP Q L LTWAL ++ A+E W Sbjct: 1 MDSEGASRGFDALIIAISQAYEGRGKRWYTSTLELRLASLETCRACRRVPTIHVRVDANTPPSLWSPHAMPTRAHTRSSKTRAXXXXXXXXXXXXXXXXXXXXXXXXKARISSRVPVGQALGLTWALPTEILLQGVAVELW 141
BLAST of mRNA_L-elsbetiae_contig782.16771.1 vs. uniprot
Match: D7FTK8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTK8_ECTSI) HSP 1 Score: 99.0 bits (245), Expect = 1.370e-19 Identity = 60/133 (45.11%), Postives = 72/133 (54.14%), Query Frame = 1 Query: 106 DANGKSRCLDAFIVALNQACQGGTGRWYTSTLQLQLASLELCRACRSVPALHVRVDDRTPRTLCSPRKTHIAELDTRGSEARRSSRVPAMQVLRLTWALSDSRMMPSAAIEQWGWSLQEMSFGTDFNQCIAAV 504 + G LD IVALNQAC G RWY STL+LQL SLELC ACRS LHV V + TP TL S R + R E S+RVPA+Q L TWAL R+ AA E + + + G F + +V Sbjct: 82 NTEGGGSSLDTLIVALNQACDGQEKRWYVSTLELQLVSLELCGACRSAQLLHVFVREDTPPTLWSSRTSRTTP-SQRSPEVCTSNRVPAVQALCWTWALPMDRLPQRAAAEPQPVTERRLQDGHSFAASVESV 213
BLAST of mRNA_L-elsbetiae_contig782.16771.1 vs. uniprot
Match: A0A6H5KVM8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVM8_9PHAE) HSP 1 Score: 92.4 bits (228), Expect = 7.620e-19 Identity = 48/87 (55.17%), Postives = 61/87 (70.11%), Query Frame = 1 Query: 115 GKSRCLDAFIVALNQACQGGTGRWYTSTLQLQLASLELCRACRSVPALHVRVDDRTPRTLCSPRKTHIAELDTRGSEARRSSRVPAM 375 G ++C DAF+VAL+QAC+GG R YTSTL+L LASL++CRA RS LHVRV +TPR+ SP K + D S+ R SSRVP + Sbjct: 18 GPTQCFDAFVVALSQACEGGNKRSYTSTLELPLASLDICRAGRSTSTLHVRVQYQTPRSFWSPPKVQLRP-DEGSSKIRLSSRVPVV 103
BLAST of mRNA_L-elsbetiae_contig782.16771.1 vs. uniprot
Match: A0A6H5K8K9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8K9_9PHAE) HSP 1 Score: 101 bits (252), Expect = 8.950e-19 Identity = 56/108 (51.85%), Postives = 68/108 (62.96%), Query Frame = 1 Query: 115 GKSRCLDAFIVALNQACQGGTGRWYTSTLQLQLASLELCRACRSVPALHVRVDDRTPRTLCSPRKTHIAELDTRGSEARRSSRVPAMQVLRLTWALSDSRMMPSAAIE 438 G+S CLDAFIVAL QA G RWY STL+LQL SLE C ACRS + V++ +TP +L SPRK+H L R EA SRVPA+Q WAL ++P +A E Sbjct: 25 GRSECLDAFIVALKQAGDGRAKRWYVSTLELQLVSLEFCGACRSALSFDVQIHRQTPHSLWSPRKSH-GTLKKRSREACIPSRVPAVQANGWMWALPMEILLPRSATE 131 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig782.16771.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig782.16771.1 >prot_L-elsbetiae_contig782.16771.1 ID=prot_L-elsbetiae_contig782.16771.1|Name=mRNA_L-elsbetiae_contig782.16771.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=149bp MHMDANGKSRCLDAFIVALNQACQGGTGRWYTSTLQLQLASLELCRACRSback to top mRNA from alignment at L-elsbetiae_contig782:12766..17736+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig782.16771.1 ID=mRNA_L-elsbetiae_contig782.16771.1|Name=mRNA_L-elsbetiae_contig782.16771.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4971bp|location=Sequence derived from alignment at L-elsbetiae_contig782:12766..17736+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig782:12766..17736+ >mRNA_L-elsbetiae_contig782.16771.1 ID=mRNA_L-elsbetiae_contig782.16771.1|Name=mRNA_L-elsbetiae_contig782.16771.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=894bp|location=Sequence derived from alignment at L-elsbetiae_contig782:12766..17736+ (Laminarionema elsbetiae ELsaHSoW15)back to top |