mRNA_L-elsbetiae_contig7813.16765.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7813.16765.1
Unique NamemRNA_L-elsbetiae_contig7813.16765.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7813.16765.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7813contigL-elsbetiae_contig7813:6600..7478 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size846
Cds size528
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7813.16765.1prot_L-elsbetiae_contig7813.16765.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7813 6931..7458 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816865.806939-UTR-L-elsbetiae_contig7813:6599..68061622816865.806939-UTR-L-elsbetiae_contig7813:6599..6806Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7813 6600..6806 +
1691683872.1151943-UTR-L-elsbetiae_contig7813:6599..68061691683872.1151943-UTR-L-elsbetiae_contig7813:6599..6806Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7813 6600..6806 +
1622816865.8203979-UTR-L-elsbetiae_contig7813:6839..69301622816865.8203979-UTR-L-elsbetiae_contig7813:6839..6930Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7813 6840..6930 +
1691683872.1290877-UTR-L-elsbetiae_contig7813:6839..69301691683872.1290877-UTR-L-elsbetiae_contig7813:6839..6930Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7813 6840..6930 +
1622816865.8528502-UTR-L-elsbetiae_contig7813:7458..74781622816865.8528502-UTR-L-elsbetiae_contig7813:7458..7478Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7813 7459..7478 +
1691683872.1502857-UTR-L-elsbetiae_contig7813:7458..74781691683872.1502857-UTR-L-elsbetiae_contig7813:7458..7478Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7813 7459..7478 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816865.8357127-CDS-L-elsbetiae_contig7813:6930..74581622816865.8357127-CDS-L-elsbetiae_contig7813:6930..7458Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7813 6931..7458 +
1691683872.13996-CDS-L-elsbetiae_contig7813:6930..74581691683872.13996-CDS-L-elsbetiae_contig7813:6930..7458Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7813 6931..7458 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7813.16765.1

>prot_L-elsbetiae_contig7813.16765.1 ID=prot_L-elsbetiae_contig7813.16765.1|Name=mRNA_L-elsbetiae_contig7813.16765.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=176bp
MCVCVFFPPIIGIFVVCPTGPPPPIRPAISPNWGGLDPLLRCVPAQRYIC
FFYFAVLHSYLRCFEVASNWGKHGCSDHHGGVASGKPRRCRFGRQPAPAR
PHAKYHFVWTTDSGPFTLKAVYVFGVTYTAHPAAHLASRGCYIYRYCAAG
FLARTCCLSSAGSVATAAASGEVAN*
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mRNA from alignment at L-elsbetiae_contig7813:6600..7478+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7813.16765.1 ID=mRNA_L-elsbetiae_contig7813.16765.1|Name=mRNA_L-elsbetiae_contig7813.16765.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=879bp|location=Sequence derived from alignment at L-elsbetiae_contig7813:6600..7478+ (Laminarionema elsbetiae ELsaHSoW15)
GTGCCACACCTGGAATCAGGTGGCCGTGGGCGCCGCTGTTGGCAGCGGTA
CCGGGGCGTTATGGTATCTTTTGTACTCCAAGGTGAGTTTGATATTTTTT
GGCAGCTCGTTTTTCGGGTTGACATGTGGTATCGTGCAACCCTGCCACGA
AACACTATGTTGGTCCAGCCAAAAGAGAGAAAACCAAGCTTCAATGCGTG
TATTGTAGCCTTAAGAACACGTGCAGGCAGACGGAACAAGGGTGGCATGG
GATCGAGCTTTTCTTACAAGCGAACTATGTCTCCAGCGACAAGTTTTTTC
TCTTCATTTTTACATACATAGCTTGCCAGCGATGTGTGTGTGTGTTTTTT
TCCCGCCCATTATTGGCATATTTGTTGTCTGCCCCACTGGCCCCCCCCCT
CCAATACGACCAGCTATATCACCCAACTGGGGTGGGTTGGACCCCCTCCT
GCGGTGTGTACCAGCTCAGCGATATATCTGCTTCTTCTACTTTGCTGTAC
TCCATTCATATCTTCGTTGCTTCGAAGTCGCGTCAAATTGGGGCAAGCAT
GGTTGCTCCGATCATCATGGGGGTGTGGCCAGTGGAAAACCACGCCGGTG
TCGTTTTGGTCGGCAACCTGCGCCAGCGAGACCACATGCAAAGTACCACT
TTGTCTGGACGACCGACAGCGGACCGTTTACCCTGAAGGCCGTCTATGTA
TTCGGTGTTACATATACCGCACACCCGGCCGCTCATCTTGCTTCGAGAGG
GTGCTACATATATCGCTATTGTGCTGCCGGCTTTCTTGCTCGCACGTGTT
GCCTCTCTTCGGCAGGTTCTGTTGCCACTGCTGCCGCAAGTGGTGAAGTG
GCCAATTAGCCGGGCGCTCTATATCAAGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7813:6600..7478+

>mRNA_L-elsbetiae_contig7813.16765.1 ID=mRNA_L-elsbetiae_contig7813.16765.1|Name=mRNA_L-elsbetiae_contig7813.16765.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1056bp|location=Sequence derived from alignment at L-elsbetiae_contig7813:6600..7478+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTGTGTGTGTGTTTTTTTCCCGCCCATTATTGGCATATTTGTTGTCTG
CCCCACTGGCCCCCCCCCTCCAATACGACCAGCTATATCACCCAACTGGG
GTGGGTTGGACCCCCTCCTGCGGTGTGTACCAGCTCAGCGATATATCTGC
TTCTTCTACTTTGCTGTACTCCATTCATATCTTCGTTGCTTCGAAGTCGC
GTCAAATTGGGGCAAGCATGGTTGCTCCGATCATCATGGGGGTGTGGCCA
GTGGAAAACCACGCCGGTGTCGTTTTGGTCGGCAACCTGCGCCAGCGAGA
CCACATGCAAAGTACCACTTTGTCTGGACGACCGACAGCGGACCGTTTAC
CCTGAAGGCCGTCTATGTATTCGGTGTTACATATACCGCACACCCGGCCG
CTCATCTTGCTTCGAGAGGGTGCTACATATATCGCTATTGTGCTGCCGGC
TTTCTTGCTCGCACGTGTTGCCTCTCTTCGGCAGGTTCTGTTGCCACTGC
TGCCGCAAGTGGTGAAGTGGCCAATTAGATGTGTGTGTGTGTTTTTTTCC
CGCCCATTATTGGCATATTTGTTGTCTGCCCCACTGGCCCCCCCCCTCCA
ATACGACCAGCTATATCACCCAACTGGGGTGGGTTGGACCCCCTCCTGCG
GTGTGTACCAGCTCAGCGATATATCTGCTTCTTCTACTTTGCTGTACTCC
ATTCATATCTTCGTTGCTTCGAAGTCGCGTCAAATTGGGGCAAGCATGGT
TGCTCCGATCATCATGGGGGTGTGGCCAGTGGAAAACCACGCCGGTGTCG
TTTTGGTCGGCAACCTGCGCCAGCGAGACCACATGCAAAGTACCACTTTG
TCTGGACGACCGACAGCGGACCGTTTACCCTGAAGGCCGTCTATGTATTC
GGTGTTACATATACCGCACACCCGGCCGCTCATCTTGCTTCGAGAGGGTG
CTACATATATCGCTATTGTGCTGCCGGCTTTCTTGCTCGCACGTGTTGCC
TCTCTTCGGCAGGTTCTGTTGCCACTGCTGCCGCAAGTGGTGAAGTGGCC
AATTAG
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