mRNA_L-elsbetiae_contig78.16751.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig78.16751.1
Unique NamemRNA_L-elsbetiae_contig78.16751.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig78.16751.1 vs. uniprot
Match: A0A6H5JWL4_9PHAE (ACB domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JWL4_9PHAE)

HSP 1 Score: 159 bits (401), Expect = 1.210e-46
Identity = 74/83 (89.16%), Postives = 82/83 (98.80%), Query Frame = 1
Query:   10 QDTERLFGMAANHMITVKGLSLSSDQRLELYSLFKQATEGDCEEPKPGLIDLVGRAKWGAWDRRRGVEPVEAMKSYLLEVTDL 258
            +DTERLFGMAANHMITVKG++LSSDQRLELYSLFKQATEGDCE+PKPGLIDLVGRAKWGAW+R RG+EPVEAMKSYLL+VT+L
Sbjct:   12 EDTERLFGMAANHMITVKGVALSSDQRLELYSLFKQATEGDCEDPKPGLIDLVGRAKWGAWNRLRGMEPVEAMKSYLLKVTEL 94          
BLAST of mRNA_L-elsbetiae_contig78.16751.1 vs. uniprot
Match: UPI001EE5EA37 (acyl-CoA-binding protein-like n=1 Tax=Haliotis rubra TaxID=36100 RepID=UPI001EE5EA37)

HSP 1 Score: 83.6 bits (205), Expect = 2.890e-19
Identity = 38/80 (47.50%), Postives = 53/80 (66.25%), Query Frame = 1
Query:   19 ERLFGMAANHMITVKGLSLSSDQRLELYSLFKQATEGDCEEPKPGLIDLVGRAKWGAWDRRRGVEPVEAMKSYLLEVTDL 258
            E  F  AA  +  +K    S D+ LE+Y+L+KQAT GDC  PKPG++DL G+AKWGAWD ++G+   EA   Y+ +V +L
Sbjct:    4 EATFNKAAEEVKNLKSKP-SDDEMLEIYALYKQATVGDCNTPKPGMLDLKGKAKWGAWDGKKGISQDEARVQYVAKVEEL 82          
BLAST of mRNA_L-elsbetiae_contig78.16751.1 vs. uniprot
Match: A0A7S3YGI6_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YGI6_HETAK)

HSP 1 Score: 82.0 bits (201), Expect = 2.420e-18
Identity = 41/77 (53.25%), Postives = 48/77 (62.34%), Query Frame = 1
Query:   28 FGMAANHMITVKGLSLSSDQRLELYSLFKQATEGDCEEPKPGLIDLVGRAKWGAWDRRRGVEPVEAMKSYLLEVTDL 258
            F  AA  M   K L +S+DQ+L LY LFKQA   DC+ PKP LI++  RAKW AW+ RRGV    AM  YL  VT L
Sbjct:   28 FEKAAAFMSRNKSLQMSNDQQLNLYGLFKQAQHSDCDTPKPSLINMRDRAKWAAWNERRGVPRARAMAMYLDVVTGL 104          
BLAST of mRNA_L-elsbetiae_contig78.16751.1 vs. uniprot
Match: Q2SPD2_HAHCH (Acyl-CoA-binding protein n=2 Tax=Hahella chejuensis TaxID=158327 RepID=Q2SPD2_HAHCH)

HSP 1 Score: 80.9 bits (198), Expect = 6.530e-18
Identity = 37/87 (42.53%), Postives = 60/87 (68.97%), Query Frame = 1
Query:    1 YSLQDTERLFGMAANHMITVKG-LSLSSDQRLELYSLFKQATEGDCEEPKPGLIDLVGRAKWGAWDRRRGVEPVEAMKSYLLEVTDL 258
            Y++ D ++ F  A N++ T +G  S S++ +LE+Y+L+KQA+EGD    +PG++D VGRAK+ AW + +GV   EAM+ Y+  + DL
Sbjct:   22 YAMSDLQKAFEEALNYVKTAEGDFSPSNEMKLEMYALYKQASEGDVSGSRPGMMDFVGRAKYDAWSKLQGVSKDEAMQRYVDVIADL 108          
BLAST of mRNA_L-elsbetiae_contig78.16751.1 vs. uniprot
Match: A0A451F6W9_9GAMM (Acyl-CoA-binding protein n=1 Tax=Hahella sp. KA22 TaxID=1628392 RepID=A0A451F6W9_9GAMM)

HSP 1 Score: 78.2 bits (191), Expect = 4.100e-17
Identity = 37/85 (43.53%), Postives = 58/85 (68.24%), Query Frame = 1
Query:    7 LQDTERLFGMAANHMITVKG-LSLSSDQRLELYSLFKQATEGDCEEPKPGLIDLVGRAKWGAWDRRRGVEPVEAMKSYLLEVTDL 258
            + D ++ F  A N++ T +G  S S++ +LE+Y+LFKQA+EGD    +PG++D VGRAK+ AW + +GV   EAM+ Y+  + DL
Sbjct:    1 MSDLQKAFEEALNYVKTAEGDFSPSNEMKLEMYALFKQASEGDVSGSRPGMMDFVGRAKYDAWAKLQGVSKDEAMQRYVDVIADL 85          
BLAST of mRNA_L-elsbetiae_contig78.16751.1 vs. uniprot
Match: A0A2G6D1Q8_9PROT (Acyl-CoA-binding protein n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A2G6D1Q8_9PROT)

HSP 1 Score: 77.0 bits (188), Expect = 1.050e-16
Identity = 36/82 (43.90%), Postives = 56/82 (68.29%), Query Frame = 1
Query:    7 LQDTERLFGMAANHMITVKG-LSLSSDQRLELYSLFKQATEGDCEEPKPGLIDLVGRAKWGAWDRRRGVEPVEAMKSYLLEV 249
            + D +  F  A N++ T       S++ +LE+Y+LFKQATEGD    KPG++D+VGRAK+GAW++ +G    EAM++Y+ +V
Sbjct:    1 MSDLKAKFDEAVNYVQTSDSDFKPSNELKLEMYALFKQATEGDVSGKKPGMLDIVGRAKYGAWEKLKGTSSEEAMQAYIDKV 82          
BLAST of mRNA_L-elsbetiae_contig78.16751.1 vs. uniprot
Match: A8JGS4_CHLRE (Acyl-coa-binding protein n=3 Tax=Chlamydomonas TaxID=3052 RepID=A8JGS4_CHLRE)

HSP 1 Score: 77.0 bits (188), Expect = 1.170e-16
Identity = 33/63 (52.38%), Postives = 46/63 (73.02%), Query Frame = 1
Query:   70 SLSSDQRLELYSLFKQATEGDCEEPKPGLIDLVGRAKWGAWDRRRGVEPVEAMKSYLLEVTDL 258
            +LS+D++LELY+LFKQA EGDC   +PG+ D  GRAKW AW+ ++G+   EAM+ Y+  V  L
Sbjct:   21 TLSNDEKLELYALFKQANEGDCNTAQPGIFDPKGRAKWSAWNAKKGLGKEEAMQKYIDYVASL 83          
BLAST of mRNA_L-elsbetiae_contig78.16751.1 vs. uniprot
Match: A0A835XIU0_9CHLO (ACB domain-containing protein n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A835XIU0_9CHLO)

HSP 1 Score: 77.0 bits (188), Expect = 1.200e-16
Identity = 37/77 (48.05%), Postives = 48/77 (62.34%), Query Frame = 1
Query:   28 FGMAANHMITVKGLSLSSDQRLELYSLFKQATEGDCEEPKPGLIDLVGRAKWGAWDRRRGVEPVEAMKSYLLEVTDL 258
            F  AA         S+++D+RLELY LFKQA EGDC    PG++D  GRAKW AW+ ++G+   EAMK Y+  V  L
Sbjct:    7 FDAAAKEATDTLPDSVTNDERLELYGLFKQAKEGDCNTSCPGILDPKGRAKWNAWNGKKGMAKDEAMKKYIEYVAGL 83          
BLAST of mRNA_L-elsbetiae_contig78.16751.1 vs. uniprot
Match: A0A5N5PCB4_PANHP (ACB domain-containing protein n=2 Tax=Pangasianodon hypophthalmus TaxID=310915 RepID=A0A5N5PCB4_PANHP)

HSP 1 Score: 76.6 bits (187), Expect = 1.530e-16
Identity = 36/81 (44.44%), Postives = 52/81 (64.20%), Query Frame = 1
Query:   16 TERLFGMAANHMITVKGLSLSSDQRLELYSLFKQATEGDCEEPKPGLIDLVGRAKWGAWDRRRGVEPVEAMKSYLLEVTDL 258
            TE  F  AA  +  +K    S  + LE+YSLFKQAT GD    +PG++D  G+AKW AWD ++G+   +AMK+Y+ +V +L
Sbjct:    2 TEEAFQKAAEEVKQLKAKP-SDAEMLEIYSLFKQATVGDVNTARPGMLDFTGKAKWDAWDAKKGMSKEDAMKAYISKVEEL 81          
BLAST of mRNA_L-elsbetiae_contig78.16751.1 vs. uniprot
Match: D8UAF3_VOLCA (ACB domain-containing protein n=3 Tax=Volvox TaxID=3066 RepID=D8UAF3_VOLCA)

HSP 1 Score: 76.6 bits (187), Expect = 1.660e-16
Identity = 33/63 (52.38%), Postives = 45/63 (71.43%), Query Frame = 1
Query:   70 SLSSDQRLELYSLFKQATEGDCEEPKPGLIDLVGRAKWGAWDRRRGVEPVEAMKSYLLEVTDL 258
            +LS+D++LELY+LFKQA EGDC   +PG+ D  GRAKW AW+ ++G    +AMK Y+  V  L
Sbjct:   21 TLSNDEKLELYALFKQAKEGDCNTSQPGIFDPKGRAKWNAWNGKKGTSQEDAMKQYIEYVAAL 83          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig78.16751.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JWL4_9PHAE1.210e-4689.16ACB domain-containing protein n=2 Tax=Ectocarpus T... [more]
UPI001EE5EA372.890e-1947.50acyl-CoA-binding protein-like n=1 Tax=Haliotis rub... [more]
A0A7S3YGI6_HETAK2.420e-1853.25Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
Q2SPD2_HAHCH6.530e-1842.53Acyl-CoA-binding protein n=2 Tax=Hahella chejuensi... [more]
A0A451F6W9_9GAMM4.100e-1743.53Acyl-CoA-binding protein n=1 Tax=Hahella sp. KA22 ... [more]
A0A2G6D1Q8_9PROT1.050e-1643.90Acyl-CoA-binding protein n=1 Tax=Proteobacteria ba... [more]
A8JGS4_CHLRE1.170e-1652.38Acyl-coa-binding protein n=3 Tax=Chlamydomonas Tax... [more]
A0A835XIU0_9CHLO1.200e-1648.05ACB domain-containing protein n=1 Tax=Edaphochlamy... [more]
A0A5N5PCB4_PANHP1.530e-1644.44ACB domain-containing protein n=2 Tax=Pangasianodo... [more]
D8UAF3_VOLCA1.660e-1652.38ACB domain-containing protein n=3 Tax=Volvox TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig78contigL-elsbetiae_contig78:61259..61970 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score144.1
Seed ortholog evalue3.1e-32
Seed eggNOG ortholog2880.D7G738
Preferred nameACBD6
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006163,GO:0006637,GO:0006725,GO:0006732,GO:0006753,GO:0006790,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009117,GO:0009150,GO:0009259,GO:0009987,GO:0019637,GO:0019693,GO:0033865,GO:0033875,GO:0034032,GO:0034641,GO:0035383,GO:0043603,GO:0044237,GO:0044238,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0051186,GO:0055086,GO:0071704,GO:0072521,GO:1901135,GO:1901360,GO:1901564
EggNOG free text desc.acyl-coa-binding protein
EggNOG OGsCOG4281@1,KOG0817@2759
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Ec32 ortholog descriptionmembrane acyl-CoA binding protein
Ec32 orthologEc-01_011160.1
Exons2
Model size258
Cds size258
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816864.3919308-CDS-L-elsbetiae_contig78:61258..614401622816864.3919308-CDS-L-elsbetiae_contig78:61258..61440Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig78 61259..61440 +
1691683870.9763725-CDS-L-elsbetiae_contig78:61258..614401691683870.9763725-CDS-L-elsbetiae_contig78:61258..61440Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig78 61259..61440 +
1622816864.4048676-CDS-L-elsbetiae_contig78:61894..619701622816864.4048676-CDS-L-elsbetiae_contig78:61894..61970Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig78 61895..61970 +
1691683870.9919705-CDS-L-elsbetiae_contig78:61894..619701691683870.9919705-CDS-L-elsbetiae_contig78:61894..61970Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig78 61895..61970 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig78.16751.1prot_L-elsbetiae_contig78.16751.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig78 61259..61970 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig78.16751.1

>prot_L-elsbetiae_contig78.16751.1 ID=prot_L-elsbetiae_contig78.16751.1|Name=mRNA_L-elsbetiae_contig78.16751.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=86bp
YSLQDTERLFGMAANHMITVKGLSLSSDQRLELYSLFKQATEGDCEEPKP
GLIDLVGRAKWGAWDRRRGVEPVEAMKSYLLEVTDL
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mRNA from alignment at L-elsbetiae_contig78:61259..61970+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig78.16751.1 ID=mRNA_L-elsbetiae_contig78.16751.1|Name=mRNA_L-elsbetiae_contig78.16751.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=712bp|location=Sequence derived from alignment at L-elsbetiae_contig78:61259..61970+ (Laminarionema elsbetiae ELsaHSoW15)
TATTCCCTGCAGGACACGGAGCGACTGTTTGGCATGGCGGCGAACCACAT GATCACCGTCAAAGGACTGAGCCTGTCGTCCGACCAGAGGCTGGAGCTGT ACTCGCTGTTCAAGCAGGCCACGGAGGGAGACTGTGAAGAGCCCAAGCCC GGGCTGATCGATCTCGTCGGGAGAGCAAAATGGTGAGCGCGATAGAGGGG GAGTTGGGGCGGGGTTGATCAAGACAGACAAAATGTCCTAAATACGGTGT GCAAGTTGTTGGGGTACATAAGGGGTAGAATGCGGTCAGTGTCGTCGTTT GCAGCGCACAATGTTGGAGTTCGAGCACTCGAGTCTCGGTATGACCCCGC GGTGGAGCAAGAGTAGGCAGATCGACAGGCAGGCCGACAGCAGCGCAGGA CTTGTTGGTATCACACCACAGAAGGTAGACACCGAGTGGGAAAAGAGCAG GTGGCTCAGATGGATAAAGCTGTCATCCGATAAATACGCCCCCGCTGGTT GCATTTCTCGGCGGACTCACGGCTGAGCTCGCGGATGCGCGAGCTGATCA TTTTCCAAACGCATGGCGGTCTCTCTTTTTTTTTTGTCAACACATTTTGC GCGAACGTCTCTGATTGGTTGTGTCTGTGGCGGCAGGGGGGCGTGGGATC GACGCCGCGGGGTTGAGCCTGTAGAGGCGATGAAGTCCTACCTTCTCGAG GTCACAGATCTT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig78:61259..61970+

>mRNA_L-elsbetiae_contig78.16751.1 ID=mRNA_L-elsbetiae_contig78.16751.1|Name=mRNA_L-elsbetiae_contig78.16751.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=516bp|location=Sequence derived from alignment at L-elsbetiae_contig78:61259..61970+ (Laminarionema elsbetiae ELsaHSoW15)
TATTCCCTGCAGGACACGGAGCGACTGTTTGGCATGGCGGCGAACCACAT
GATCACCGTCAAAGGACTGAGCCTGTCGTCCGACCAGAGGCTGGAGCTGT
ACTCGCTGTTCAAGCAGGCCACGGAGGGAGACTGTGAAGAGCCCAAGCCC
GGGCTGATCGATCTCGTCGGGAGAGCAAAATGTATTCCCTGCAGGACACG
GAGCGACTGTTTGGCATGGCGGCGAACCACATGATCACCGTCAAAGGACT
GAGCCTGTCGTCCGACCAGAGGCTGGAGCTGTACTCGCTGTTCAAGCAGG
CCACGGAGGGAGACTGTGAAGAGCCCAAGCCCGGGCTGATCGATCTCGTC
GGGAGAGCAAAATGGGGGGCGTGGGATCGACGCCGCGGGGTTGAGCCTGT
AGAGGCGATGAAGTCCTACCTTCTCGAGGTCACAGATCTTGGGGGCGTGG
GATCGACGCCGCGGGGTTGAGCCTGTAGAGGCGATGAAGTCCTACCTTCT
CGAGGTCACAGATCTT
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