mRNA_L-elsbetiae_contig78.16749.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig78.16749.1
Unique NamemRNA_L-elsbetiae_contig78.16749.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig78.16749.1 vs. uniprot
Match: A0A6H5JND9_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JND9_9PHAE)

HSP 1 Score: 472 bits (1215), Expect = 1.350e-165
Identity = 238/322 (73.91%), Postives = 276/322 (85.71%), Query Frame = 1
Query:    1 MSTAQRFRRFDFGNKAIEGIFDSSVVGGAVTIASVLLMVVLVLSELVMYIKVDTTSHMAVADVHEHDVVTARLHATFPFVECKADLEVITDHSRGGVPRSAEGVAVDRRPATKAEIRPFQPKGGGSGCTLDGTVEVERAAGSIVVHVVHHDPKRVIWRGPFISTTPGETRSGPKGVAGQNVTHKIHDFGFGPPLKGSVGTGRNSLAGSTFVSDRGAGIVKYSLKVVPISHQRIHGAEVKTHTYSSNIAFVPEDDAIRDVSSA-LLLGVVFSFDFTPVMVRYTDTRRSLFELVTSVCAIVGGIYTVSGLLVRGVHGVSRKKHD 963
            M TA R RRFD G KA++G+ D S+VG  V+IASV LM VLV+SEL+ YIKVDT+SHMAVAD HEHD VTARLHATFPFVECK DLEV+TDH +GGVP S E V+V +RPA+K E  PFQP+GGG GCTLDGTV VERAAG+I++HV+HHDP RVI+ G F++ T GETRSGPK VAGQN+THKIHDFGFGPP+KG VG GRNSLA STFVS+ G+G+VKYSLKVVPI H+R+HGAEV THTYSSN+AFVPE D ++D+SS+ LLLGV FS+DFT VMV+YTDTRRS+FEL+TSVCAIVGGIYTVSGL VRG+  VS KKHD
Sbjct:    1 MFTASRLRRFDLGQKAVQGVLDKSLVGALVSIASVTLMAVLVISELLAYIKVDTSSHMAVADFHEHDAVTARLHATFPFVECK-DLEVVTDHPQGGVPNS-EAVSVHKRPASKTERYPFQPQGGGLGCTLDGTVTVERAAGTIMIHVMHHDPSRVIFTGRFLARTKGETRSGPKAVAGQNMTHKIHDFGFGPPVKGPVGVGRNSLARSTFVSEAGSGLVKYSLKVVPIFHRRMHGAEVNTHTYSSNVAFVPEADVLQDLSSSSLLLGVEFSYDFTSVMVKYTDTRRSMFELITSVCAIVGGIYTVSGLFVRGLQVVSPKKHD 320          
BLAST of mRNA_L-elsbetiae_contig78.16749.1 vs. uniprot
Match: A0A7S2UYF2_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UYF2_9STRA)

HSP 1 Score: 140 bits (353), Expect = 1.430e-35
Identity = 96/324 (29.63%), Postives = 168/324 (51.85%), Query Frame = 1
Query:    1 MSTAQRFRRFDFGNKAIEGIFDSSVVGGAVTIASVLLMVVLVLSELVMYIKVDTTSHMAVADVHE--HDVVTARLHATFPFVECKADLEVITDHSRGG-----VPRSAEGVAVDRRPATKAEIRPFQPKGG---GSGCTLDGTVEVERAAGSIVVHVVHHDPKRVIWRGPFISTTPGETRSGPKGVAGQNVTHKIHDFGFGPP-LKGSVGTGRNSLAGSTFVSDRGAGIVKYSLKVVPISHQRIHGAEVKTHTYSSNIAFVPEDDAIRDVSSALLLGVVFSFDFTPVMVRYTDTRRSLFELVTSVCAIVGGIYTVSGLLVRGVH 939
            M  +Q  +  D  +K +  I + +  G  V+IAS+ +M +L++SE+ +Y KVD  SHM V+ + E         LH TFP + C+ DL++  ++ +GG     +   +    +D R +   E+  F+ +        CT++G++++ R  GSI +      P  +      +     +  + P      NV+H IH+  FG   L G    G   L  +    D G+G+ +Y +K+VP +++ +H   VK H   S +    +D A   +SS   LG+  S+DF+P+MV Y + ++S+F+ +T++CAI+GG++T S LLV  +H
Sbjct:    1 MGLSQLMKSLDGFSKPMADIQEKTTAGAVVSIASLAIMALLLISEIWLYFKVDVVSHMGVSHLKEGMEQPFDVHLHITFPHMRCE-DLDLRVENLKGGDAADVMKMLSSSKTLDMRQSKPNEVVLFKDEARFKMNETCTVEGSLKLPRVGGSIDI-ASRRKPVDIASLLSALFLNTAQLGNVP------NVSHVIHELWFGDKILGGDQMAGSLPLKDACNAVDHGSGLFRYEVKIVPTTYEWLHTHRVKEHYQYSVVENFVKDSA--GISSLSTLGLEISYDFSPIMVEYVEQKQSIFQFLTNLCAIMGGVFTTSSLLVGLIH 314          
BLAST of mRNA_L-elsbetiae_contig78.16749.1 vs. uniprot
Match: B8BZR7_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BZR7_THAPS)

HSP 1 Score: 114 bits (285), Expect = 1.220e-25
Identity = 101/347 (29.11%), Postives = 167/347 (48.13%), Query Frame = 1
Query:   22 RRFDFGNKAIEGIFDSSVVGGAVTIASVLLMVVLVLSELVMYIKVDTTSHMAVAD-------------VHEHDVVTARLHATFPFVECKADLEVITDHSRGGVPRS---------AEGVAVDRRPAT----KAEIRPFQPKGGG--SGCTLDGTVEVERAAGSIVVHVVHHDPKRVIWRGPFISTTPGETRSGPKGVAGQNVTHKIHDFGFGPPLKGSVGTGRNSLAGSTFVSDRGAGIV--KYSLKVVPISHQR-IHGAEVKTHTYSSNIA-FVPEDDAIRDVSSALLLGVVFSFDFTPVMVRYTDTRRSLFELVTSVCAIVGGIYT----VSGLLVRGVHGVSRK 954
            R +D   K I+GI + SV GG +T+ + +   +L LS++++YI+VDT   M +A+             +     +  R+H TFP + CKA      D+S+ G   S         A      R P      KA +  F+        GCTL GT++V R  G++ + V     +R      F     G+ +    G    NVTH +HD  FG P       G N L G   V D G+G+     ++K+VP +++R I+ A+    TY ++++  + + + +    S LL G++ ++DFTP+ VR+ ++R +    ++S+  IVGG++     VSG LV     V++K
Sbjct:    4 RTYDAFAKPIDGIRERSVSGGFITLLASITAALLFLSQIILYIQVDTRHSMHLAESVPSALFNKSPQNILSGHQIPLRVHVTFPHLPCKA-----LDYSQDGNSESTGKFEHYHSAPYTFTKRVPTVIDYKKAAVSGFKDVNTARRQGCTLVGTIKVPRVGGTMSISVSPEAWRRATSILSF-GVDLGKDQDMFHGKL-PNVTHYVHDITFGDPFP----PGSNPLKGVHHVMDNGSGVALANVAVKLVPTTYKRTIYSAK---ETYQASVSRHIVQPETLAAQRSTLLPGLMLTYDFTPLAVRHVESRENWLVFLSSLVGIVGGVFVTVGLVSGCLVNSAQAVAKK 336          
BLAST of mRNA_L-elsbetiae_contig78.16749.1 vs. uniprot
Match: A0A7S2AXB8_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2AXB8_9STRA)

HSP 1 Score: 112 bits (281), Expect = 2.310e-25
Identity = 91/314 (28.98%), Postives = 154/314 (49.04%), Query Frame = 1
Query:   10 AQRFRRFDFGNKAIEGIFDSSVVGGAVTIASVLLMVVLVLSELVMYIKVDTTSHMAV-ADVHEHDVVTARLHATFPFVECKA-DLEVITDHSRGGVPRSAEGVAVDRRPATKAEIRPFQPKGGGSGCTLDGTVEVERAAGSIVVHVVHHDPKRVIWRGPFISTTPG-ETRSGPKG-VAGQNVTHKIHDFGFGPPLKGSVGTGRNSLAGSTFVSDRGAGIVKYSLKVVPISHQRIHGAEVKTHTYSSNIAFVPEDDAIRDVSSALLLGVVFSFDFTPVMVRYTDTRRSLFELVTSVCAIVGGIYTVSGLLVRGVH 939
            A   ++FD   KA++G+   ++ G  +T+AS  L+V+L  SEL+++  V T  HM V +   +   V   LHATFP + C + +LEV    +  G P      ++ + P             G  GC+L G + V +  G+  +          +   P +  + G  + +G  G   G N++H IH   FGP   G      N L   T V     G  ++ +KV+P  ++ +  + V ++ YS +  FV + D +  + ++   G+ F +DF PVMV Y + + S+ + +T +C I+GGI+TVSGL+   +H
Sbjct:    2 ADWLKKFDVHVKALDGVRKRTLPGAILTLASSTLIVLLCFSELLVFSSVKTVHHMTVDSAAADRPSVRISLHATFPHLACDSTNLEV---EATRGDPTMDVVNSIVKTPV------------GEGGCSLKGELLVGKVGGNFHIST----GMAGLPSSPMLQLSSGLMSATGLMGSFKGVNMSHTIHHLSFGPKFPGRS----NPLEEVTNVVSTDVGQYQFHIKVIPTVYKYLRRSPVYSNQYSLSEQFV-KLDLMSALKASSAPGIFFYYDFYPVMVEYDEEKVSILQFLTRICGIIGGIFTVSGLIDGFLH 291          
BLAST of mRNA_L-elsbetiae_contig78.16749.1 vs. uniprot
Match: A0A067CWK1_SAPPC (Uncharacterized protein n=3 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067CWK1_SAPPC)

HSP 1 Score: 107 bits (267), Expect = 1.600e-23
Identity = 84/318 (26.42%), Postives = 147/318 (46.23%), Query Frame = 1
Query:   13 QRFRRFDFGNKAIEGIFDSSVVGGAVTIASVLLMVVLVLSELVMYIKVDTTSHMAVADVHEHDVVTARLHATFPFVECKADLEVITDHSRGGVPRSAEGVAVDRRPATKAEIRPFQPKGGGSGCTLDGTVEVERAAGSIVVHVVHHDPKRVIWRGPFISTTPGETRSGPKGVAGQNVTHKIHDFGFGPPLKGSVGTGRNSLAGSTFVSDRGAGIVKYSLKVVPISHQRIHGAEVKTHTYS-SNIAFVPEDDAIRDVSSALLLGVVFSFDFTPVMVRYTDTRRSLFELVTSVCAIVGGIYTVSGLLVRGVHGVSRKKHD 963
            QR R++D   K +EGI   +  G  +T+ S++++++L LSEL +Y   +  + M V    +  ++   +  TF   E + D+ +    ++G           +R    K+++  +  +    GC   G V+V++ AG I  +  H     +     F+                 N +H +H   FGP    S+    N L     V      I KY L +VP  +  ++G  ++T+ YS +  A  P ++           GVVFS++F+P+ V Y +T+ S  + +TS CAIVGG++ V+ +L   VH V+ +K D
Sbjct:    3 QRLRQYDVYTKGVEGIQMRTTSGAIITLVSLVVVLLLFLSELGIYTTTEVVNRMYVDIDPQDTIMHVEVDITF-LHEPETDVAMDASDTKG-----------NREVIVKSDVIAYPLENSEEGCRFTGYVDVQKTAGDI--NFAHEGSLNMFTFLEFLDF---------------NSSHIVHSLRFGP----SIPEMTNPLQDVHKVVVENFKIYKYGLSIVPTQYTPLYGPSIQTYQYSVTEHASDPNENGRFSFP-----GVVFSYEFSPIKVEYIETKPSFLQFLTSTCAIVGGVFAVARILDGLVHSVASRKLD 282          
BLAST of mRNA_L-elsbetiae_contig78.16749.1 vs. uniprot
Match: A0A7S1CC96_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CC96_9STRA)

HSP 1 Score: 106 bits (265), Expect = 4.260e-23
Identity = 91/318 (28.62%), Postives = 146/318 (45.91%), Query Frame = 1
Query:   22 RRFDFGNK-AIEGIFDSSVVGGAVTIASVLLMVVLVLSELVMYIKVDTTSHMAVADVHEHDVVTARLHATFPFVECKADLEVITDHSRGGVPRSAEGVAVDRRPATKAEIRPFQPKGGGSGCTLDGTVEVERAAGSIVVHVVHHDPKRVIWRGPFISTTPGETRSGPKGVAGQNVTHKIHDFGFGPPLKGSVGTGRNSLAGSTFVSDRGAGIVKYSLKVVPISHQRIHGAEVKTHTYSSNIAFVPEDDA--IRDVSSALL------LGVVFSFDFTPVMVRYTDTRRSLFELVTSVCAIVGGIYTVSGLLVRGVHGVS 948
            + FD   K A E +   ++ G  +T A   L V LV++E  ++   +   H+ V D      +   L+  FP V C+ DL V    +RG +  +   V +++ P   A+     P     GC + GT  V + AG I +                 +  PG  R G    A  N +H I    FG P  G V     +L G T          +Y ++ VP  ++ + GA + +H YS+   FV + +A    D  + ++       GV F F+F+PVMVR  +T+R++ + +TS+CAIVGG++TV+G++    H  S
Sbjct:    2 KAFDLHVKVAHEHLVKRTLCGAVLTAAFAALSVALVVNEASLWATTEVEDHLRV-DAGVSMPLDVALNIAFPHVRCR-DLRVTVSDARG-LTYAELRVNLEKTPFPDADKGDQAP-----GCVVAGTATVRKVAGLINIEA------------GAAAQIPGFRRDGD--TAALNTSHVIRKLSFGDPFPGMV----EALGGFTSPPRDKPARYQYFIQAVPTVYEPLRGARIASHQYSAT-KFVTDVEAPDANDFEAIMMGGGVQPAGVYFKFEFSPVMVRVVETKRTVLQFLTSICAIVGGVFTVAGMVDATAHRTS 292          
BLAST of mRNA_L-elsbetiae_contig78.16749.1 vs. uniprot
Match: A0A1W0A9T6_9STRA (Endoplasmic reticulum-Golgi intermediate compartment protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A9T6_9STRA)

HSP 1 Score: 103 bits (257), Expect = 4.260e-22
Identity = 84/319 (26.33%), Postives = 148/319 (46.39%), Query Frame = 1
Query:   13 QRFRRFDFGNKAIEGIFDSSVVGGAVTIASVLLMVVLVLSELVMYIKVDTTSHMAVADVHEHDVVT-ARLHATFPFVECKADLEVITDHSRGGVPRSAEGVAVDRRPATKAEIRPFQPKGGGSGCTLDGTVEVERAAGSIVVHVVHHDPKRVIWRGPFISTTPGETRSGPKGVAGQNVTHKIHDFGFGPPLKGSVGTGRNSLAGSTFVSDRGAGIVKYSLKVVPISHQRIHGAEVKTHTYS-SNIAFVPEDDAIRDVSSALLLGVVFSFDFTPVMVRYTDTRRSLFELVTSVCAIVGGIYTVSGLLVRGVHGVSRKKHD 963
            QR R++D   K +EGI + +  G  +T+ S++++++L LSEL +Y   +  + M V DV   D V    +  TF    C +D+ +    ++G           +R    ++++  +  +    GC   G V++++ AG I  +  H     +     F+                 N +H +H   FGP +   V    N L     V      + KY + +VP  +  ++G+ V+T+ YS +  A  P ++           GV FS++F+P+ V Y +T+ S  + +TS CAIVGG++ V+ +L   V+ VS  K D
Sbjct:    3 QRLRQYDVYTKGVEGIQERTTGGAIITLTSLVVVLLLFLSELGIYTTTEVANRMYV-DVDPQDTVMHVEVDITFLHEPC-SDVAMDASDTKG-----------NREVIVQSDVVAYPLEDEKEGCRFKGFVDLKKIAGDI--NFAHEGSLNMFTFLEFLDF---------------NSSHIVHSLRFGPSIPNMV----NPLENVHKVVIENFKLYKYRISIVPTQYTPLYGSPVQTYQYSVTEHASDPNENGRFSFP-----GVAFSYEFSPIKVEYIETKPSFLQFLTSTCAIVGGVFAVARILDGFVYSVSAHKVD 282          
BLAST of mRNA_L-elsbetiae_contig78.16749.1 vs. uniprot
Match: A0A8J9RYZ5_9CHLO (Endoplasmic reticulum-Golgi intermediate compartment protein n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9RYZ5_9CHLO)

HSP 1 Score: 102 bits (255), Expect = 2.500e-21
Identity = 93/347 (26.80%), Postives = 141/347 (40.63%), Query Frame = 1
Query:   19 FRRFDFGNKAIEGIFDSSVVGGAVTIASVLLMVVLVLSELVMYIKVDTTSHMAVADVHEHDVVTARLHATFPFVECKADLEVITDHS---RGGVPRSAEGVAVDRRPATKAE------------------------IRPFQPKGGGSGCTLDGTVEVERAAGSIVVHVVHHDPKRVIWR-----GPFISTTPGETRSGPKGV------AGQNVTHKIHDFGFGPPLKGSVGTGRNSLAGSTFVSDRGAGIVKYSLKVVPISHQRIHGAEVKTHTYSSNIAFVPEDDAIRDVSSALLLGVVFSFDFTPVMVRYTDTRRSLFELVTSVCAIVGGIYTVSGLLVRGVHGV 945
            F RF    +A   +   +  G  VT+  V+L +VL  +EL  Y K  +       D      +    + T+P + C+      TD S    G    +A G     R + + E                        +   Q      GC + G ++++R AG+  V V H D    + R        +         G   +       G N +H IH   FGP   G V    N L G+  +  + +G  KY LKVVP  + ++ G   KTH YS     V E D +       +  V FS+DF P+ V  T TR+S   L+T +CA++GG++ V+G+L R VH +
Sbjct:    6 FNRFSAYARAESHLVQRTYFGAIVTVLGVILAIVLFTNELQEYRKPFSIQTQMSVDTTRAHHIRMNFNFTYPAMPCQVLSLDATDSSGQRSGDSGHAANGEIHKVRLSKEGERIGLGEYIPPRRWGFMLGKPRQEVMEVNQAMDAHEGCNIFGWLDLQRVAGNFRVSV-HVDDFFALTRTQESIAEALQAQLSHMDGGMHAIQLQADTTGINSSHIIHRVSFGPTYPGQV----NPLDGAERILQKESGTFKYFLKVVPTEYVKLDGTRTKTHQYS-----VTEYDTVVHKGEMQMPSVWFSYDFAPISVTITQTRKSFAHLLTRLCAVIGGVFAVTGMLDRWVHRI 342          
BLAST of mRNA_L-elsbetiae_contig78.16749.1 vs. uniprot
Match: A0A2D4CFI8_PYTIN (Endoplasmic reticulum-Golgi intermediate compartment protein, putative n=2 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CFI8_PYTIN)

HSP 1 Score: 95.9 bits (237), Expect = 2.660e-19
Identity = 79/312 (25.32%), Postives = 140/312 (44.87%), Query Frame = 1
Query:   19 FRRFDFGNKAIEGIFDSSVVGGAVTIASVLLMVVLVLSELVMYIKVDTTSHMAVADVHEHDVVTARLHATFPFVECKADLEVITDHSRGGVPRSAEGVAVDRRPATKAEIRPFQPKGGGSGCTLDGTVEVERAAGSIVVHVVHHDPKRVIWRGPFISTTPGETRSGPKGVAGQNVTHKIHDFGFGPPLKGSVGTGRNSLAGSTFVSDRGAGIVKYSLKVVPISHQRIHGAEVKTHTYSSNIAFVPEDDAIRDVSSALLLGVVFSFDFTPVMVRYTDTRRSLFELVTSVCAIVGGIYTVSGLLVRGVHGVSRK 954
            +RRFD   K +EGI + ++ GG VT+ S  +++ L+LSEL ++  V+ T  M V    ++  +   +   F   +C  D+ +    ++G           ++    + E+R  +   G +GC   G V V++ AG I     H     +     F++                N +H I+    GP +          L   T          KY + +VP  +    G EV T+ YS       E  A R     L  GV+FS++F+P+ V+Y +++ S+ + +TS  AI+GG++ V+ ++   ++ VS+K
Sbjct:    3 WRRFDLNLKGVEGIQERTIGGGIVTLVSSEVVLFLLLSELSVWWTVEVTHRMHVDTQPQNLPIRMDVDIVFLHEKC-TDVAIDVSDAKG-----------NKEILLEDEVR--EEPYGETGCRFIGAVSVKKVAGDI--SFAHEGSLNIFSFHDFLNF---------------NASHHINHLRIGPAIPNM----ETPLVDVTKTIVNNVATYKYFVNIVPTKYVYYSGREVVTYQYSVT---EHESKAGRSQGQMLFPGVIFSYEFSPIAVKYVESKPSVLQFLTSSSAIIGGVFAVARMVDGAIYSVSKK 276          
BLAST of mRNA_L-elsbetiae_contig78.16749.1 vs. uniprot
Match: UPI000C875DCD (endoplasmic reticulum-Golgi intermediate compartment protein 3-like n=1 Tax=Dioscorea cayennensis subsp. rotundata TaxID=55577 RepID=UPI000C875DCD)

HSP 1 Score: 97.1 bits (240), Expect = 4.330e-19
Identity = 62/200 (31.00%), Postives = 102/200 (51.00%), Query Frame = 1
Query:  373 GSGCTLDGTVEVERAAGSIVVHVVHHDPKRVIWRGPFISTTPGETRSGPKGVAGQNVTHKIHDFGFGPPLKGSVGTGRNSLAGSTFVSDRGAGIVKYSLKVVPISHQRIHGAEVKTHTYSSNIAFVPEDDAIRDVSSALLLGVVFSFDFTPVMVRYTDTRRSLFELVTSVCAIVGGIYTVSGLLVRGV---HGVSRKKHD 963
            G GC ++G +EV + AG+      H  P +        +    E  + P  +   N++HKI+   FG    G V    N L G+ +     +GI +Y +KVVP  +  I G ++ ++ +S    F  E D     +S  L GV F +DF+P+ V +T+  +S+   +T++CAI+GG++TVSG++   V   H   +KK D
Sbjct:  199 GEGCNINGFLEVSKVAGNF-----HFSPGKSFHHSNIRAQ---ELLAVP--IGNYNISHKINKLSFGKEFPGVV----NPLDGAQWTQQMSSGIYQYFVKVVPTIYIDIRGHKIHSNQFSVTEHFSDEKD-----NSKSLQGVFFYYDFSPIKVIFTEENKSILHFLTNICAIIGGVFTVSGIIDAFVYHGHRAIKKKVD 379          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig78.16749.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JND9_9PHAE1.350e-16573.91Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S2UYF2_9STRA1.430e-3529.63Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
B8BZR7_THAPS1.220e-2529.11Uncharacterized protein n=1 Tax=Thalassiosira pseu... [more]
A0A7S2AXB8_9STRA2.310e-2528.98Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A067CWK1_SAPPC1.600e-2326.42Uncharacterized protein n=3 Tax=Saprolegniaceae Ta... [more]
A0A7S1CC96_9STRA4.260e-2328.62Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]
A0A1W0A9T6_9STRA4.260e-2226.33Endoplasmic reticulum-Golgi intermediate compartme... [more]
A0A8J9RYZ5_9CHLO2.500e-2126.80Endoplasmic reticulum-Golgi intermediate compartme... [more]
A0A2D4CFI8_PYTIN2.660e-1925.32Endoplasmic reticulum-Golgi intermediate compartme... [more]
UPI000C875DCD4.330e-1931.00endoplasmic reticulum-Golgi intermediate compartme... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig78contigL-elsbetiae_contig78:50951..55017 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score474.2
Seed ortholog evalue4.9e-131
Seed eggNOG ortholog2880.D7G740
KEGG koko:K20365,ko:K20367
Hectar predicted targeting categorysignal anchor
GOsGO:0008150,GO:0009825,GO:0009987,GO:0016049,GO:0040007
EggNOG free text desc.vesicle-mediated transport
EggNOG OGsCOG0445@1,KOG2667@2759
COG Functional cat.D
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Ec32 ortholog descriptionEndoplasmic reticulum vesicle transporter, C-terminal
Ec32 orthologEc-01_011140.1
Exons3
Model size966
Cds size966
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig78.16749.1prot_L-elsbetiae_contig78.16749.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig78 50951..55017 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816864.251381-CDS-L-elsbetiae_contig78:50950..510381622816864.251381-CDS-L-elsbetiae_contig78:50950..51038Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig78 50951..51038 +
1691683870.8790486-CDS-L-elsbetiae_contig78:50950..510381691683870.8790486-CDS-L-elsbetiae_contig78:50950..51038Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig78 50951..51038 +
1622816864.2628894-CDS-L-elsbetiae_contig78:51547..517091622816864.2628894-CDS-L-elsbetiae_contig78:51547..51709Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig78 51548..51709 +
1691683870.8979225-CDS-L-elsbetiae_contig78:51547..517091691683870.8979225-CDS-L-elsbetiae_contig78:51547..51709Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig78 51548..51709 +
1622816864.2757995-CDS-L-elsbetiae_contig78:54301..550171622816864.2757995-CDS-L-elsbetiae_contig78:54301..55017Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig78 54302..55017 +
1691683870.9078853-CDS-L-elsbetiae_contig78:54301..550171691683870.9078853-CDS-L-elsbetiae_contig78:54301..55017Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig78 54302..55017 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig78.16749.1

>prot_L-elsbetiae_contig78.16749.1 ID=prot_L-elsbetiae_contig78.16749.1|Name=mRNA_L-elsbetiae_contig78.16749.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=322bp
MSTAQRFRRFDFGNKAIEGIFDSSVVGGAVTIASVLLMVVLVLSELVMYI
KVDTTSHMAVADVHEHDVVTARLHATFPFVECKADLEVITDHSRGGVPRS
AEGVAVDRRPATKAEIRPFQPKGGGSGCTLDGTVEVERAAGSIVVHVVHH
DPKRVIWRGPFISTTPGETRSGPKGVAGQNVTHKIHDFGFGPPLKGSVGT
GRNSLAGSTFVSDRGAGIVKYSLKVVPISHQRIHGAEVKTHTYSSNIAFV
PEDDAIRDVSSALLLGVVFSFDFTPVMVRYTDTRRSLFELVTSVCAIVGG
IYTVSGLLVRGVHGVSRKKHD*
back to top

mRNA from alignment at L-elsbetiae_contig78:50951..55017+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig78.16749.1 ID=mRNA_L-elsbetiae_contig78.16749.1|Name=mRNA_L-elsbetiae_contig78.16749.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4067bp|location=Sequence derived from alignment at L-elsbetiae_contig78:50951..55017+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTCGACAGCTCAACGATTCCGACGGTTTGACTTCGGCAACAAAGCCAT AGAGGGAATCTTCGACAGCTCGGTAGTGGGTGGTGCAGGTGTGTGGGTTG TGCAGTGCAGTTCATCGCAGAGCCGAGTTTCGCCGCACCCATCGGAATGA GAGATCCCAATCTTATAGGAGTACAATATTCGAAGCAACGAGTGTGCCAC CCTCTGCTACATATATACAGCCCACCATAAATCGAAGCGAGTCGACACTA CTGCAACATTAGTCCACTACTTGATTGCATTACAGTGTTTAGAAGGATTA CTCATCTTTCGGTAACAGCTGTGTGTTGTAGCTAACATACACAGCTCGCC GGGGTGACCCCTCACAGCAGTTATTTTGATCTCGATTGCCCACGGAGCGC CGCTCTGTTGAGTTGATCAATACAAATAGAGGGTTCCAGAACGTGGGATC GGGGCCAGCATGTTTAATTTTGATGTATTGAGAGCACACGAGCCAACGGG ATATCGGAAGTGAAACCGATTAGATAATGTTCTCTGCTGTGCAAGATAGC CACGTGCTGCGACTCTGACTAATGATGGCTTCTGCTCCGACGCGCAGTTA CGATAGCGTCAGTGCTGCTGATGGTGGTGCTCGTCCTCTCGGAGCTAGTG ATGTACATCAAGGTTGATACAACGAGCCATATGGCGGTGGCCGACGTTCA CGAGCATGACGTCGTAACGGCTCGCTTGCACGCCACGTTCCCATTCGTTG AGTGCAAAGGTGAGCTGGAGTGTGTTGAACGCAGCATGTGATTTAGTCAG CAGAGAGAAAGCTGCGCGTCCAAGAGCTGTAGCGGTAGGCATATCCCGTC GGTGTGGTGCGTGTTCGGCCCAGAAATTTGTTCCAACATCAGTACGTAGA ACCGTAGTTGCAAAATAAGGTAGTGTGGGTAGCGCAAGGTCGAGGTCTGG GTCGGAGTCAGTGGTGATGTCGTCCACCACTGAAGACGGGCGTCCTCGGG TTTATCGGCTTCATTGCCGGGGTGAGTTTTCTTTCCCGACGGGATGGCGG CTGAGCAGCTTTAGAGTAGGTACTCTGCTGCTGCTGCTGCTGTTGTTGCT GTTGCTTCTTCTTTTTCTTTTGGGCGCCACTCTGATGGCGTGCGCCAGAG CCCTTCGTGGGTGCGCACCTCCCGCGGCTCGCGGGCGGGGAAGTTGTTTG GCATCGTGTTTTTTTTTTGTATTCTCAAAAAATAAGACACCGCTCCTTCG TCGAGCACCAATGTGGGTAGCGCTTCAGGTCGAGATCTAGGTCGGGGTCG GTGGTGATGTAGTCCACCACTGAAGACGGGCGTAGTCTTTCTTCGCTACG ATGTTGCGAGAATTTGCCAAGTATTGACCGAGTGTACTCGGTCAAGCCAA GGGCGAGGTTCGAGAGTGGGCGGAGCCGTCTTGGACCCAACTTTCCCATC TCAAGATCCATCCGAGGTTCGCAGCAACGGGGGATCATTTGTGTAAAGAT TCCAGAACATGGAGACTGTTCTCATATGGATCTGAATATCCTACTCTTGT GTATTGTATGTGTGTGTGCATTTGCATGGTGTTGCCTCAACTGGTCTACA CAGTAGAGGAAAGTTTGCTGCAGAGAAAGTGGCCGTATGTCTACGTACAT ATCTAAAAATATAAGAACGACCACCTGCCTGATGAGGAGATATGGCGCTT TTTCTTATCATATAAATTGCTCTGCGTGGCATCGCGCTTCCAGTTTTCTT TTCCTTTCTTTGGACCGGAACACAACGATACACACACGACAACGAACGGT AGCTTTGACGAAGTCACACACAATCGTTCTAGTCCAAAATACGTTGTTCT ACGTTCGCAATGGCCCGCAAGTAGGCAGCGTGAGAGTCGCTGATGCATCC GGGGGAACGCCAATCGCTATTCGCAGCAAAACGCCTCTTTGTCATGTTAT ATTGTTTTTTGTGTGGAGGCCAGGTTGTGGATAAGAAATTGAAGCCTCGT TTCCAGTGGTGAACGATATCACCACTGACTCCCACCTAGCTTAGCCCGAG ACTACACATCTACATTTGTGCGAAATAACGTACAAACCCAGCTAGACACT GCCAACAAAAAAATGATTTTTTACGCCGGCGACTCTCGGACAGCGGAAAG ACAGAGCAGTAGACTACTCTAGACAAAGTAACGCTACACCTCCACAGATG ACAGCCGACACCGATCATACCACACAGATGATGATGTCTAAGAAGCAGTG GGGACGTCTGCGGAGTAGGAGGGCGTGGCGGGGAACACACAAGACGAGAC CTTTCGAAACGAGGAGCAGCACAGCGTCGGTTATTACTGATGTTGCACAA CTCGATAACCCCCCCTACCTGCCAACCTCTCTCTGCTGCTGACACAACGG GAAACAGCACCGACGTGCGCTGCTGCTGTGTGTTCACATCTCTTGTTCGG TCGGGCATTGTGATGTGCATTGCTGTGCTGTGTGCATCGCATGTGTCGTC TTGACTGTTGTCACCCGATGTTTGCAGCAGTTCTGCTCTATCTAAAGATG CGACCGTCGTATCTCATGACAAACTTGGAGATTGACGATGAGAATTGGCA GAGAGCAGCTACGGTTGTGTGTCGAGGCGCCCGCGGAAGGAATAAGCGAT TGCTTCGTCTTTGAGAAATATATCCCTAAAAAATGAAGATCTACGAGATC AAAAGGGGTTACAGTATGGATTCGGTCCACAAAGTCGACGGCCGTATTTG ATCAGAACCTTCGAGACTGAGGTTGACGCTTGGCAGAGAGCAGCTACTGC TCTGTGCTGAGGCACTCCTGCAAGGATTAGGCATTTGGTTTCTGTTTGAG AAAGATAGCTGCAAAAAAACGAAATCGATAGGGACTAAACTATAGGAAAA AAGGGGTCATGTTTTCTGTCACAGGATTTCTGTCACAGGATTTCTGTCAC AAAAAAAGATATAGCTCACGAGAAAGGCCTGAGAGAACAACCTACTGAAA ATTGGAAAAGGGGAGGTTTTCGAACAGTCAAATCGGGAAAAGCACCAAAA ACAACCCATACAACTCGAGTGCATGGTTGGCGAGTATGGTTGCACTTGTA CTACGTCGGTGCTTGTTGCACGCACGAGTGGATCCATAGTTTGTCCCTCA TTCCACCGAGTGTTGGACCTGCAAACAACATTGGCGTGTTTCCCCTTCCT TTCCGTTGCCACACGCAGATTTCATCGACGTGTACACCACGCTTTGCCTA CATTTGTCGAGATGGTTTTTTCACCCCAATCTATCCCCGCCAGCAATCAA TCACCCACCCACGCGCGCCCTGAACTCCACCACCACCCCCGCACAACCAA GCAGATCTTGAGGTGATCACCGATCACTCGCGAGGGGGTGTCCCACGTTC AGCAGAGGGAGTGGCGGTGGATAGGAGACCAGCGACCAAGGCCGAGATAA GACCTTTCCAGCCAAAGGGAGGCGGGTCGGGCTGCACGTTGGACGGTACC GTGGAAGTAGAGCGAGCGGCGGGGTCTATCGTGGTACACGTAGTGCACCA CGATCCTAAAAGGGTCATCTGGAGGGGCCCCTTCATCTCGACCACCCCGG GAGAGACTCGATCTGGGCCGAAAGGCGTGGCGGGGCAAAACGTAACCCAC AAGATCCACGACTTTGGTTTCGGGCCGCCGTTGAAGGGGTCGGTGGGGAC AGGGAGGAACTCGTTGGCAGGGAGCACGTTTGTGTCGGACCGGGGGGCGG GTATTGTCAAGTACTCCTTGAAGGTGGTGCCGATTTCCCACCAGCGGATA CACGGGGCGGAGGTGAAGACGCACACCTACTCGTCGAACATTGCCTTCGT GCCAGAAGACGACGCCATCAGAGACGTGTCCTCCGCGCTCCTGCTGGGCG TGGTGTTCTCGTTCGATTTTACGCCCGTCATGGTGCGCTACACCGACACA CGGCGGTCGTTGTTCGAGCTGGTCACCAGCGTTTGCGCTATTGTGGGGGG GATTTATACGGTTAGCGGTCTACTCGTTCGGGGTGTGCACGGTGTGTCGA GAAAGAAACATGATTAA
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig78:50951..55017+

>mRNA_L-elsbetiae_contig78.16749.1 ID=mRNA_L-elsbetiae_contig78.16749.1|Name=mRNA_L-elsbetiae_contig78.16749.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1932bp|location=Sequence derived from alignment at L-elsbetiae_contig78:50951..55017+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTCGACAGCTCAACGATTCCGACGGTTTGACTTCGGCAACAAAGCCAT
AGAGGGAATCTTCGACAGCTCGGTAGTGGGTGGTGCAGATGTCGACAGCT
CAACGATTCCGACGGTTTGACTTCGGCAACAAAGCCATAGAGGGAATCTT
CGACAGCTCGGTAGTGGGTGGTGCAGTTACGATAGCGTCAGTGCTGCTGA
TGGTGGTGCTCGTCCTCTCGGAGCTAGTGATGTACATCAAGGTTGATACA
ACGAGCCATATGGCGGTGGCCGACGTTCACGAGCATGACGTCGTAACGGC
TCGCTTGCACGCCACGTTCCCATTCGTTGAGTGCAAAGTTACGATAGCGT
CAGTGCTGCTGATGGTGGTGCTCGTCCTCTCGGAGCTAGTGATGTACATC
AAGGTTGATACAACGAGCCATATGGCGGTGGCCGACGTTCACGAGCATGA
CGTCGTAACGGCTCGCTTGCACGCCACGTTCCCATTCGTTGAGTGCAAAG
CAGATCTTGAGGTGATCACCGATCACTCGCGAGGGGGTGTCCCACGTTCA
GCAGAGGGAGTGGCGGTGGATAGGAGACCAGCGACCAAGGCCGAGATAAG
ACCTTTCCAGCCAAAGGGAGGCGGGTCGGGCTGCACGTTGGACGGTACCG
TGGAAGTAGAGCGAGCGGCGGGGTCTATCGTGGTACACGTAGTGCACCAC
GATCCTAAAAGGGTCATCTGGAGGGGCCCCTTCATCTCGACCACCCCGGG
AGAGACTCGATCTGGGCCGAAAGGCGTGGCGGGGCAAAACGTAACCCACA
AGATCCACGACTTTGGTTTCGGGCCGCCGTTGAAGGGGTCGGTGGGGACA
GGGAGGAACTCGTTGGCAGGGAGCACGTTTGTGTCGGACCGGGGGGCGGG
TATTGTCAAGTACTCCTTGAAGGTGGTGCCGATTTCCCACCAGCGGATAC
ACGGGGCGGAGGTGAAGACGCACACCTACTCGTCGAACATTGCCTTCGTG
CCAGAAGACGACGCCATCAGAGACGTGTCCTCCGCGCTCCTGCTGGGCGT
GGTGTTCTCGTTCGATTTTACGCCCGTCATGGTGCGCTACACCGACACAC
GGCGGTCGTTGTTCGAGCTGGTCACCAGCGTTTGCGCTATTGTGGGGGGG
ATTTATACGGTTAGCGGTCTACTCGTTCGGGGTGTGCACGGTGTGTCGAG
AAAGAAACATGATTAACAGATCTTGAGGTGATCACCGATCACTCGCGAGG
GGGTGTCCCACGTTCAGCAGAGGGAGTGGCGGTGGATAGGAGACCAGCGA
CCAAGGCCGAGATAAGACCTTTCCAGCCAAAGGGAGGCGGGTCGGGCTGC
ACGTTGGACGGTACCGTGGAAGTAGAGCGAGCGGCGGGGTCTATCGTGGT
ACACGTAGTGCACCACGATCCTAAAAGGGTCATCTGGAGGGGCCCCTTCA
TCTCGACCACCCCGGGAGAGACTCGATCTGGGCCGAAAGGCGTGGCGGGG
CAAAACGTAACCCACAAGATCCACGACTTTGGTTTCGGGCCGCCGTTGAA
GGGGTCGGTGGGGACAGGGAGGAACTCGTTGGCAGGGAGCACGTTTGTGT
CGGACCGGGGGGCGGGTATTGTCAAGTACTCCTTGAAGGTGGTGCCGATT
TCCCACCAGCGGATACACGGGGCGGAGGTGAAGACGCACACCTACTCGTC
GAACATTGCCTTCGTGCCAGAAGACGACGCCATCAGAGACGTGTCCTCCG
CGCTCCTGCTGGGCGTGGTGTTCTCGTTCGATTTTACGCCCGTCATGGTG
CGCTACACCGACACACGGCGGTCGTTGTTCGAGCTGGTCACCAGCGTTTG
CGCTATTGTGGGGGGGATTTATACGGTTAGCGGTCTACTCGTTCGGGGTG
TGCACGGTGTGTCGAGAAAGAAACATGATTAA
back to top