mRNA_L-elsbetiae_contig778.16728.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
|
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig778.16728.1 vs. uniprot
Match: A0A6H5KQ21_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQ21_9PHAE) HSP 1 Score: 1077 bits (2786), Expect = 0.000e+0 Identity = 800/1292 (61.92%), Postives = 846/1292 (65.48%), Query Frame = 1
Query: 226 GTKRSKRCGICVGCRAKSCDQCKYCRDSKKNNGPNKLKQPCIKRRCRNLPGDAIDWTDALLPDRRDSGGGALAPPELECEYCFKRARELCSPMVVDLSPVEAEAFLKQQEAEHSVNGSGGGGSEGGHRKVRFPRFRRASRGEXXXXXXXXXXXEGSPRASVGPTVHEACAQSMFKARAERAQHKLRGLREQAVEEAIRLGGYQTLPLGRDRHGRFYYRFPRDSRRVFVSQPVREGDGDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSERPSSQGEGSLVRAFSPAAGRP-------------PLEEDLMVYENDGDVEALMAWLNESGQREGPLRAALLRAFPP---SPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGA-------------------------------------------RRGPRRGGXX--GDA-NDRGVLARPSRNQELPRMLAEGGVELRIAVNPPGANNNVLVPATEAVVEFDNDGEAAEDDPSN--GGAVTWSKKYHAVRLHDASSGEVLVPSQRQGISVVYEIWRGQQLVEFTPCDVPFDKNGVYFFTAPKFHRTGTFRLVFHVVPAQFYAAPPPVQVGGEAAPVEKKKGFNIKPLEFHVQVSPRFTYTGAVAALHKLRAVQYLKHRHRQEPDAVAVDLDLSFDCDEVECLKMGIFTMLNALPKGAFKEGGGGGVGASATDTLGDDESCDGFEQQSAGLAAAASGWTPSLRECWVPHVASATKSQDLMEALLLLESCLDPKWLKQWYRPVQQKMQSTSHLLRLSTPAAVALRLFGLDRAILYDKVATRAQRGSRLRSGIQLRDRSGADSSRGXXXXXXXXXXXXXXGAAANGRRSRTSLQAAAEAAPSRPRGRQSRTSRAAEGREEGGGRGSRYPPRRGRAAKKVXXXXXXXXXXXXXDLSPGSWXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDASASATSTWKCPICTVDNELASDKCVVCAHRRPATALPRGSRKRQRQERNEPLDDGNVGGGRSSDEQDASGXXXXXXXXXXXXXXXXTSTVGAGERRGGETTRQRRGVPRVNYAEDND--------DGGAAGMARGRGAKASAAKQGRRGGGAGKPAARGGGKSRNAPLSLSGELRLEVKGEEEALPGDVRAFRRLVRSVVKGLSREAFAVHFLDAVDLNSYPQYVEVVAEPMHLGKIMFKLRQGEYDSRE 3885
G KRSKRCGICVGCRAK+CD+CKYC DSKKNNGPNKLKQPCIKRRCRNLPGDAIDW DALLPD R +GGG ELECEYCFK +ELCSPMVVDLSP EAE FLK QEAE + +GSGG HRKVRFPRF RA GE XXXXXX SPRAS GP VHE CAQSMFKARAERAQHKLRGLREQAVEEAIRLGGYQTLPLGRDRHGRFYYRFP DSRRVFVSQPVREG GDG SE + G G +A AA +P P EED MVYENDGDV+AL+AWLNESGQREGPLRAALLRAFPP SP XX XXXXXXXXXXXXXX GA R G RR GDA +DRGVLARPSRNQELPR+LAEGGVELR+AVNPPGA+NNV+VP TE VVEFDNDGEA EDD N GG+V+WSKKY+AVRLHDAS+GEVLVPSQRQGISVVYEIWRGQQLVEFTPCDVPFDKNGVYFFTAPKFHRTG FRLVFHVVPAQFYAAP P G E A +KKGF IKPLEFHVQVSPRFTYTGAVAALHKLRAV YLK RHR+E +AV VDLDL FDCDE+ECLKMG+FT+LNALPKGAFKEGG TD + ++ SGWTPSLRECWV VASAT+ QDLMEALLLLE CLD KWLK WYRP QQKMQS HLLRLSTPAAVALRLF LDRAILYDKVATRAQRGSRLR+GIQLR RS A S G XXXXX G R +GR +R PPRRGR AKK DLSPGSW XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX D A A +TW CP CTVDNELA DKCVVC+ RRPA ALPRG XXXXXXXXXXXXXXXX G RQRRGV RVNYAEDND GAK S + RNAPL L ELR V EE L DVR FRR+VRS VK S+EA+ +HF DAVDL +YPQY ++V EPM L +I+FKLRQGEYDS+E
Sbjct: 2036 GAKRSKRCGICVGCRAKACDRCKYCLDSKKNNGPNKLKQPCIKRRCRNLPGDAIDWADALLPDPRANGGGGGG--ELECEYCFKMEKELCSPMVVDLSPEEAETFLKHQEAEQNGDGSGGAECSNPHRKVRFPRFSRARPGEGXXXXXXVGK---SPRAS-GPVVHEVCAQSMFKARAERAQHKLRGLREQAVEEAIRLGGYQTLPLGRDRHGRFYYRFPGDSRRVFVSQPVREGKGDGLDSVV---------------------------SEATGADGGGGDAKAAGVAAAQPSWRKLVPSPGGPAPAEEDFMVYENDGDVDALVAWLNESGQREGPLRAALLRAFPPASPSPPXXEAALALEKADHGDGLKPSAAAMVADGEGXXXXXXXXXXXXXXXGADNVAAATAAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGRGGARRSSSRRAGDAASDRGVLARPSRNQELPRLLAEGGVELRVAVNPPGASNNVVVPETEVVVEFDNDGEAVEDDARNEGGGSVSWSKKYYAVRLHDASTGEVLVPSQRQGISVVYEIWRGQQLVEFTPCDVPFDKNGVYFFTAPKFHRTGRFRLVFHVVPAQFYAAPQP---GDEGAATAEKKGFKIKPLEFHVQVSPRFTYTGAVAALHKLRAVPYLKQRHREESEAVEVDLDLRFDCDELECLKMGLFTLLNALPKGAFKEGG------LTTDEVEGLSEQQXXXRERLPATTTTSGWTPSLRECWVSQVASATRGQDLMEALLLLELCLDQKWLKPWYRPAQQKMQSAWHLLRLSTPAAVALRLFALDRAILYDKVATRAQRGSRLRNGIQLRGRSSASSRGGGDTKAARALXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEG------RGDDGR-------NRKPPRRGRPAKKTSGGGSR-------DLSPGSWEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAESGDGV-------DDDALAPTTWSCPTCTVDNELADDKCVVCSKRRPAAALPRGX-------------------------XXXXXXXXXXXXXXXXXXXXXXXXXXXGR------DRQRRGVARVNYAEDNDVDSDEXXXXXXXXXXXXXXGAKKSKVVR----------------MGRNAPLPLKDELRRGV-AEEVVLLCDVREFRRVVRSAVKRSSKEAYTLHFRDAVDLVAYPQYTDIVKEPMDLARILFKLRQGEYDSQE 3210
BLAST of mRNA_L-elsbetiae_contig778.16728.1 vs. uniprot
Match: D8LI13_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI13_ECTSI) HSP 1 Score: 1025 bits (2651), Expect = 0.000e+0 Identity = 786/1228 (64.01%), Postives = 824/1228 (67.10%), Query Frame = 1
Query: 232 KRSKRCGICVGCRAKSCDQCKYCRDSKKNNGPNKLKQPCIKRRCRNLPGDAIDWTDALLPDRRDSGGGALAPPELECEYCFKRARELCSPMVVDLSPVEAEAFLKQQEAEHSVNGSGGGGSEGGHRKVRFPRFRRASRGEXXXXXXXXXXXEGSPRASVGPTVHEACAQSMFKARAERAQHKLRGLREQAVEEAIRLGGYQTLPLGRDRHGRFYYRFPRDSRRVFVSQPVREGDGDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSERPSSQGEGSLVRAFSPAAGRP-PLEEDLMVYENDGDVEALMAWLNESGQREGPLRAALLRAFPPSPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGARRGPRRGGXX---GDA-NDRGVLARPSRNQELPRMLAEGGVELRIAVNPPGANNNVLVPATEAVVEFDNDGEAAEDDPSNGG--AVTWSKKYHAVRLHDASSGEVLVPSQRQGISVVYEIWRGQQLVEFTPCDVPFDKNGVYFFTAPKFHRTGTFRLVFHVVPAQFYAAPPPVQVGGEAAPVEKKKGFNIKPLEFHVQVSPRFTYTGAVAALHKLRAVQYLKHRHRQEPDAVAVDLDLSFDCDEVECLKMGIFTMLNALPKGAFKEGGGGGVGASATDTLGDDESCDGFEQQSAGLAAAASGWTPSLRECWVPHVASATKSQDLMEALLLLESCLDPKWLKQWYRPVQQKMQSTSHLLRLSTPAAVALRLFGLDRAILYDKVATRAQRGSRLRSGIQLRDRSGADSSRGXXXXXXXXXXXXXXGAAANGRRSRTSLQAAAEAAPSRPRGRQSRTSRAAEGREEGGGRGSRYPPRRGRAAKKVXXXXXXXXXXXXXDLSPGSWXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDASASATSTWKCPICTVDNELASDKCVVCAHRRPATALPRGSRKRQRQERNEPLDDGNVGGGRSSDEQDASGXXXXXXXXXXXXXXXXTSTVGAGERRGGETTRQRRGVPRVNYAEDND---DGGAAGMARGRGAKASAAKQGRRGGGAGKPAARGGGKSRNAPLSLSGELRLEVKGEEEALPGDVRAFRRLVRSVVKGLSREAFAVHFLDAVDLNSYPQYVEVVAEPMHLGKIMFKLRQGEYDSRE 3885
KRSKRCGICV KYC DSKKNNGPNKLKQPCIKRRCRNLPGDAIDW DALLPD R +GGG ELECEYCFK +ELCSPMVVDLSP EAE FLKQQEAE + +GSG G+ HRKVRFPRF RA GE SPRAS GP VHE CAQSMFKARAERAQHKLRGLREQAVEEAIRLGGYQTLPLGRDRHGRFYYRFP DSRRVFVS PVREG GDG XXXXXXXXXXX R P+ G P P EEDLMVYENDGDV+AL+AWLNESGQREGPLRAALLRAFPP+ XXXXXXX XXXXXXXX XX GDA +DRGVLARPSRNQELPR+LAEGGVELR+AVNPPGA+NNVLVP TE VVEFDNDGEA E+D NGG +V+WSKKYHAVRLHDAS+GEVLVPSQRQGISVVYEIWRGQQLVEFTPCDVPFDKNGVYFFTAPKFHRTG FRLVFHVVPAQFYAAP P G AA EKKKGFNIKPLEFHVQVSPRFTYTGAVAALHKLRAV YLK RHR+E +AV VDLDL FDCDE LP +AT T SGWTPSLRECWV HVASAT+SQDLMEALLLLE CLD KWLK WYRP QQKMQS HLLRLSTPAAVALRLF LDRAILYDKVATRAQRGSRLR+GIQLR RS A S G XXXXX G R +GR SR PPRRGR AKK DLSPGSW XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX D A A +TW CPICTVDN+LA DKCVVC+ RRPA ALPRGSR XXXXXXXXXXXXXXXX G RQRRGV RVNYAEDND D AK+ + R G RNAP+ L ELR V EEE LPGDVR FRR+VRS VKG S+EAF +HF DAVDL +YPQY ++V EPM L +I+FKLRQGEYDS+E
Sbjct: 1672 KRSKRCGICVXXXXXXXXXXKYCLDSKKNNGPNKLKQPCIKRRCRNLPGDAIDWADALLPDPRANGGGGGG--ELECEYCFKMEKELCSPMVVDLSPEEAETFLKQQEAEQNGDGSGAEGANP-HRKVRFPRFSRARPGEGGGGGVGR-----SPRAS-GPVVHEVCAQSMFKARAERAQHKLRGLREQAVEEAIRLGGYQTLPLGRDRHGRFYYRFPGDSRRVFVSHPVREGKGDGLDIVVSEATGADGAGGDAKAAXXXXXXXXXXXXXX--------XXRKLVPSPGGPAPAEEDLMVYENDGDVDALVAWLNESGQREGPLRAALLRAFPPAXXXXXXXXAAAALEKTDDGDGLKPLASAAMVADGEGDGXXXXXXXXXXXXXXXXXXXXXXRAGDAASDRGVLARPSRNQELPRLLAEGGVELRVAVNPPGASNNVLVPETEVVVEFDNDGEAVEEDARNGGGGSVSWSKKYHAVRLHDASTGEVLVPSQRQGISVVYEIWRGQQLVEFTPCDVPFDKNGVYFFTAPKFHRTGRFRLVFHVVPAQFYAAPQPGDEG--AATAEKKKGFNIKPLEFHVQVSPRFTYTGAVAALHKLRAVPYLKQRHREESEAVEVDLDLRFDCDE-------------GLP--------------AATTT---------------------SGWTPSLRECWVSHVASATRSQDLMEALLLLELCLDQKWLKPWYRPAQQKMQSAWHLLRLSTPAAVALRLFALDRAILYDKVATRAQRGSRLRNGIQLRGRSSASSRGGGDTKAARAVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEG------RGDDGR-------SRKPPRRGRPAKKTSGGGSR-------DLSPGSWEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSAESVDGV---DDDALAPTTWSCPICTVDNDLADDKCVVCSQRRPAAALPRGSRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPLSS---GGRDRQRRGVARVNYAEDNDVDSDEXXXXXXXXXXXXXXXAKKSK--------VVRSG---RNAPVPLKDELRRGV-AEEEVLPGDVREFRRVVRSAVKGFSKEAFTLHFRDAVDLVAYPQYTDIVKEPMDLARILFKLRQGEYDSQE 2794
BLAST of mRNA_L-elsbetiae_contig778.16728.1 vs. uniprot
Match: A0A4D9D954_9STRA (Uncharacterized protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D954_9STRA) HSP 1 Score: 110 bits (274), Expect = 2.230e-20 Identity = 103/350 (29.43%), Postives = 153/350 (43.71%), Query Frame = 1
Query: 1546 PATEAVVEFDNDGEAAEDDPSNGGAVTWSKKYHAVRLHDASSGEVLVPSQRQGISVVYEIWRGQQLVEFTPCDVPFDKNGVYFFTAPKFHRTGTFRLVFHVVPAQFYAAPPPVQVGGEAAPVEKKKGFNIKPLEFHVQVSPRFTYTGAVAALHKLRAVQYLKHRHRQEPDAVAVDLDLSFDCDEVECLKMGIFTMLNALPKGAFKE------------GGGGGVGASATDTLGDDESCDGFEQQSAGLAAAASGWTPSLRECWVPHVASATKSQDLMEALLLLESCLDPKWLKQWYRPVQQKMQSTS-HLLRL-STPAAVALRLFGLDRAILYDKV--ATRAQRGSRLRS 2547
P V++ + D + D AV ++KYHAV L DA + + + V ++I++G + VE + K+ +++F +F G + L + V IKPL V+V R T + L+ + + R +V+LD+ D DEV L++ + + LP GA E GGGG A D + + A WT +L+ W+ H+ A ++ME LLLLESCL P+WLK W+ P+++ +TS HLLRL +T AA A LF LD+AILYDK R RG RS
Sbjct: 1660 PVPSEVLDIEVDPDIWGDSLERKAAVRKTRKYHAVVLVDAEDKVW----EGRNLGVRFQIFKGGEEVEESSTPRAH-KDHIFWFNVYEFLLPGLYTLRYTV----------------------DTLSREIKPLCLRVEVRARRAATSVRSVLNSHLSFLNISRGGRYSLRQ-SVELDIPEDADEVVGLRIALLQLKETLPNGALLESPEDLGGSIAHLGGGGSTNIHAGDG------------EVGPVRAPVCYWTEALQAQWINHLMEAETPHEVMEGLLLLESCLHPEWLKPWFHPLRRSYAATSSHLLRLGTTAAAAAFHLFILDKAILYDKERKVPRKTRGQSARS 1969
BLAST of mRNA_L-elsbetiae_contig778.16728.1 vs. uniprot
Match: A0A7S0SWC1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0SWC1_9STRA) HSP 1 Score: 105 bits (261), Expect = 1.460e-19 Identity = 97/354 (27.40%), Postives = 169/354 (47.74%), Query Frame = 1
Query: 1471 RMLAEGGVELRIAVNPPGANNNVLVPATEAVVEFDNDGE--AAEDDPSNGGAVTWSKKYHAVRLHDASSGEVLVPSQRQGISVVYEIWRG--QQLVEFTPCDVPFDKNGVYFFTAPKFHRTGTFRLVFHVVPAQFYAAPPPVQVGGEAAPVEKKKGFNIKPLEFHVQVSPRFTYTGAVAALHKLRAVQYLKHRHRQ---EPDAVAVDLDLSFDCDEVECLKMGIFTMLNALPKGAFKEGGGGGVGASATDTLGDDESCDGFEQQSAGLAAAASGWTPSLRECWVPHVASATKSQDLMEALLLLESCLDPKWLKQWYRPVQQKMQSTSHLLRLSTPAAVALRLFGLDRAILYDKV 2511
++L + GV++ NN V+ E V + ND E +DD S+ ++SKKY A+ L + S V +P + I+V Y+I R + ++P P+ N +Y+F++ F ++G + + F + + + NIKPL F+VQV + G++ A+++L A++Y + +RQ + + LD + E + L++ I T+ ALP G+ + D + S D E A L A ++ W+ L + W + S T LME LLLLES + +WL + + + ++ + +++ALRLF LD+AILY+K+
Sbjct: 80 KLLKDKGVDV--------LNNYVI--EEEDVFDDTNDNENVTEDDDISHVEYFSYSKKYFAIALVNKSEKRVKLP--KGTITVTYQIHRQGIASPLAYSPLSEPWSDN-IYYFSSINFKKSGKYTISFLI------------EFKNQNNQTSSVNVANIKPLVFNVQVEAKNVLCGSIHAIYQLNALKYYNYANRQINMNRNDLKTLLDDITNESEFKALQISILTLYAALPLGSLP---------TVDDENSKNSSLD--EVNIANLIAESNNWSDILDQTWRGLIHSTTSLTILMECLLLLESFISKQWLHASNVKLLNALPLPHYAMKSISLSSIALRLFCLDKAILYEKL 397 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig778.16728.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig778.16728.1 >prot_L-elsbetiae_contig778.16728.1 ID=prot_L-elsbetiae_contig778.16728.1|Name=mRNA_L-elsbetiae_contig778.16728.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=1295bp MEFCEDAEDEQRRKKNESALKNMVVERIVDAKIRVEKERRQAKDEAAAVGback to top mRNA from alignment at L-elsbetiae_contig778:23656..32652+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig778.16728.1 ID=mRNA_L-elsbetiae_contig778.16728.1|Name=mRNA_L-elsbetiae_contig778.16728.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=8997bp|location=Sequence derived from alignment at L-elsbetiae_contig778:23656..32652+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig778:23656..32652+ >mRNA_L-elsbetiae_contig778.16728.1 ID=mRNA_L-elsbetiae_contig778.16728.1|Name=mRNA_L-elsbetiae_contig778.16728.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=7770bp|location=Sequence derived from alignment at L-elsbetiae_contig778:23656..32652+ (Laminarionema elsbetiae ELsaHSoW15)back to top |