mRNA_L-elsbetiae_contig778.16727.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig778.16727.1
Unique NamemRNA_L-elsbetiae_contig778.16727.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig778.16727.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig778contigL-elsbetiae_contig778:3786..6163 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size639
Cds size636
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816862.2898915-CDS-L-elsbetiae_contig778:3785..42481622816862.2898915-CDS-L-elsbetiae_contig778:3785..4248Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig778 3786..4248 +
1691683869.4466925-CDS-L-elsbetiae_contig778:3785..42481691683869.4466925-CDS-L-elsbetiae_contig778:3785..4248Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig778 3786..4248 +
1622816862.304564-CDS-L-elsbetiae_contig778:5989..61621622816862.304564-CDS-L-elsbetiae_contig778:5989..6162Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig778 5990..6162 +
1691683869.4593685-CDS-L-elsbetiae_contig778:5989..61621691683869.4593685-CDS-L-elsbetiae_contig778:5989..6162Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig778 5990..6162 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig778.16727.1prot_L-elsbetiae_contig778.16727.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig778 3786..6162 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig778.16727.1

>prot_L-elsbetiae_contig778.16727.1 ID=prot_L-elsbetiae_contig778.16727.1|Name=mRNA_L-elsbetiae_contig778.16727.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=212bp
VTRAEDDPAARRARVQGRLGPSAAAADGMEEEDGKAKTRCRLPPLVPPAG
AAPGATAAAAVAVRSTGADDGGEGAATTGCHFRGRPGGKGKAAAEAGTAA
GPDPPRLLRAARNIAAAAAAPDGGRRLLRLGRGLPRRHGAGGRRGRTGAV
GARLASAADARRTGGEAGLRHRGSNISSGGGGGTTRARRATTTAATTTAP
PENRTGQQRPHR
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mRNA from alignment at L-elsbetiae_contig778:3786..6163+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig778.16727.1 ID=mRNA_L-elsbetiae_contig778.16727.1|Name=mRNA_L-elsbetiae_contig778.16727.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2378bp|location=Sequence derived from alignment at L-elsbetiae_contig778:3786..6163+ (Laminarionema elsbetiae ELsaHSoW15)
GTGACGCGAGCGGAGGACGATCCAGCCGCTCGACGAGCTCGAGTCCAAGG
GCGTCTCGGCCCGTCGGCGGCGGCAGCGGACGGGATGGAGGAAGAGGACG
GGAAGGCCAAGACGAGGTGCCGCCTTCCCCCTCTGGTTCCGCCAGCAGGC
GCCGCGCCCGGAGCGACAGCAGCAGCGGCCGTGGCCGTTCGGTCGACCGG
CGCCGACGACGGCGGGGAGGGAGCGGCGACGACGGGGTGTCATTTTCGCG
GTCGCCCAGGAGGCAAGGGGAAAGCAGCAGCGGAGGCGGGCACCGCAGCG
GGTCCGGATCCCCCGCGGCTTCTGCGGGCAGCGCGCAACATCGCGGCGGC
GGCGGCGGCTCCCGACGGCGGTCGCCGTCTTCTTCGTCTCGGTCGAGGTC
TCCCGCGCCGCCACGGCGCGGGCGGAAGAAGGGGGAGGACAGGCGCGGTC
GGAGCACGTCTAGGTAAGACTCGCTTATTTGTGCTCGCAGGGGTCACGTC
TGATCTTTTTCGCAGCCCAGACCCGGAGTTTGCAGTTGCGGGTGCGCGTC
TTTCAAAGCATGTTAAAGGTACGCATGTAGCAGAAGAGGCGCGATTTTTG
GGTTGTGAGGCCGAGTTCTGTCACCGCAGAGCGGCGATCTTGTGGCCGGA
AAACAGATGCATCCTGGCGCTGCTGTCGCCGTTGATTTTCTATACCATTT
TCTATCCGAGAAAGACTGCAGGATTGTGCTTGTGCCCGCGCGAGATATGA
ATGTATCGAATGCATGACTTCATGCGCGGTCGTGCCTTGCTCGTTGTGGA
AAGCTTTTGCTGAAATGGTGCCGTTGTCCATTTGTTTCGGTGTCTCCCTT
GATCAACGCAAACACAAACTCTTTCTGCTGTCGTCACTGACCAAATTATC
GCGATGCGAAATACTCGGTCAGCTCTGTGCCGTTAAATACATATCAGCAC
GATGAATTTCGAGCTTTTTTGTACACAGTCCCCTCTTCTCGTATGGGATA
CGTATTATGCGGACAGCCAAACGGTGTGTATCGCGTTGGGGCAAGAGTGT
GTGTGAGTTGGGGCGGGGGGGGGGGATATATTCCTCTTCCTTGTCTCATT
GCAAAAGTACTCGCTCCGTGACGACGTCTGGATCAAGTTTGCGTCTCACT
CCCTCCGTGAAAGTACGGTACGCAGCAGGAAGAGGGGCTCCGCAGTGGTT
TTTGCAGTTTTATCTTACGTGGTAGGTGTGTACCATTTTGGCGGCCAGAG
CCGTGTGGCTGGCCGCGAACGAGCGGGTTTTGATGTCCCATTTTTGTCGC
CACGACACCACGTTGCGCGTGGCGCCCTTTCTTTGTCCCCCCCCCTCCCC
CCCCTCGGTGCTATCATCTCGCCCTAATTCGGCCTATTTATGGACCACAG
ATCCCGTACTCTCCTAAGATACTTGGTTGATGTTCTGTACCAGATATCCA
TGCGGTGCAGCCCCAAGCGTGGAATCAGTCGTCAGAGTGGGGATCAACAC
GACCAAAAAAAAAGGCACACAGAGAAAAAAGCGGAGCGTTGTCAGGCGCG
CGGCGCCCCTCTCCTTGACTCCTCTCCCATGGCTCGTAACGTAACTGTTA
TGCTTGCTGACATGCCGCGCCGTAATCACGACATGACGTGAAGTTGGTTC
CACTCCCGCCCCGGCAGCGTTGATGTGATCGTTTTGTTTTTGTCTTGGCC
TCTCTGTGGAAATATAAACGATGGGTCGTTTTTCGCCCGCGCGTGGCATC
GGACATGCCCCCCCCCCCCCCCCTGCACAGCGTTCGGATTACCCGGAACC
CGCCGGTATCGTGTGGTAGGGGGTCACCAGGAGTGCAGGGCGGGACAATC
ACCCTCCCCCCCCCTGTTTCGCTGTTTTTGTAAGAGTTTTCAGGCCTTGT
CGAAGTTTTGTTCATACTTCTTTGTTAGAGGAATTAATATAAGCCATACT
CTTGTTAACACCCCCCCTGCTAAGTTGGTATCGAGGGGGGGGGTGGTAAG
CAGCGTATGACCATACTAAATCCTATATAAATGACCCTCTTCCCCCCCCC
CCCCCGTCCCCTCCGAATTTGGGGCTATCACAAAGTTTGGAGGTGTGCAT
CCAGCCCTACAATCATGGTGACCCCTTGCGTGCGGTGTTACATAAGAGAC
AAGCTAAAGTGTTGTGTCTTTGTGGCTCTTCCCGCTTGCTCCTCTCCTCT
CCAGCGAGCGCAGCCGACGCGAGGAGAACAGGAGGCGAAGCCGGTCTCCG
TCACCGCGGCAGCAACATCAGCAGCGGCGGCGGCGGCGGTACCACGAGAG
CCCGGCGAGCGACAACGACCGCAGCCACCACCACCGCTCCCCCCGAAAAC
CGAACAGGACAGCAGCGCCCGCACCGCG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig778:3786..6163+

>mRNA_L-elsbetiae_contig778.16727.1 ID=mRNA_L-elsbetiae_contig778.16727.1|Name=mRNA_L-elsbetiae_contig778.16727.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1272bp|location=Sequence derived from alignment at L-elsbetiae_contig778:3786..6163+ (Laminarionema elsbetiae ELsaHSoW15)
GTGACGCGAGCGGAGGACGATCCAGCCGCTCGACGAGCTCGAGTCCAAGG
GCGTCTCGGCCCGTCGGCGGCGGCAGCGGACGGGATGGAGGAAGAGGACG
GGAAGGCCAAGACGAGGTGCCGCCTTCCCCCTCTGGTTCCGCCAGCAGGC
GCCGCGCCCGGAGCGACAGCAGCAGCGGCCGTGGCCGTTCGGTCGACCGG
CGCCGACGACGGCGGGGAGGGAGCGGCGACGACGGGGTGTCATTTTCGCG
GTCGCCCAGGAGGCAAGGGGAAAGCAGCAGCGGAGGCGGGCACCGCAGCG
GGTCCGGATCCCCCGCGGCTTCTGCGGGCAGCGCGCAACATCGCGGCGGC
GGCGGCGGCTCCCGACGGCGGTCGCCGTCTTCTTCGTCTCGGTCGAGGTC
TCCCGCGCCGCCACGGCGCGGGCGGAAGAAGGGGGAGGACAGGCGCGGTC
GGAGCACGTCTAGGTGACGCGAGCGGAGGACGATCCAGCCGCTCGACGAG
CTCGAGTCCAAGGGCGTCTCGGCCCGTCGGCGGCGGCAGCGGACGGGATG
GAGGAAGAGGACGGGAAGGCCAAGACGAGGTGCCGCCTTCCCCCTCTGGT
TCCGCCAGCAGGCGCCGCGCCCGGAGCGACAGCAGCAGCGGCCGTGGCCG
TTCGGTCGACCGGCGCCGACGACGGCGGGGAGGGAGCGGCGACGACGGGG
TGTCATTTTCGCGGTCGCCCAGGAGGCAAGGGGAAAGCAGCAGCGGAGGC
GGGCACCGCAGCGGGTCCGGATCCCCCGCGGCTTCTGCGGGCAGCGCGCA
ACATCGCGGCGGCGGCGGCGGCTCCCGACGGCGGTCGCCGTCTTCTTCGT
CTCGGTCGAGGTCTCCCGCGCCGCCACGGCGCGGGCGGAAGAAGGGGGAG
GACAGGCGCGGTCGGAGCACGTCTAGCGAGCGCAGCCGACGCGAGGAGAA
CAGGAGGCGAAGCCGGTCTCCGTCACCGCGGCAGCAACATCAGCAGCGGC
GGCGGCGGCGGTACCACGAGAGCCCGGCGAGCGACAACGACCGCAGCCAC
CACCACCGCTCCCCCCGAAAACCGAACAGGACAGCAGCGCCCGCACCGCC
GAGCGCAGCCGACGCGAGGAGAACAGGAGGCGAAGCCGGTCTCCGTCACC
GCGGCAGCAACATCAGCAGCGGCGGCGGCGGCGGTACCACGAGAGCCCGG
CGAGCGACAACGACCGCAGCCACCACCACCGCTCCCCCCGAAAACCGAAC
AGGACAGCAGCGCCCGCACCGC
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