mRNA_L-elsbetiae_contig7772.16719.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7772.16719.1
Unique NamemRNA_L-elsbetiae_contig7772.16719.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig7772.16719.1 vs. uniprot
Match: D7FRQ8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FRQ8_ECTSI)

HSP 1 Score: 205 bits (522), Expect = 1.490e-57
Identity = 159/290 (54.83%), Postives = 180/290 (62.07%), Query Frame = 1 
Query:  259 MAATELSELRAELWRTRDDLERMKSRGTGTPPSASRSPRRHFDRGLH---PSTTAXXXXXXSEGRRTDRSSRRHWHKSI---GGVDKRTGS-GEDGGGIRSAPTSAPTSGDSSPGSDVERNDGSSRGLGSSRRAN----GRRIRVSSSPAARKHPSSRGASTSSGEGAPQGSSEEVAAEETLCNLELEGAAFQNWTEEASSIAVRLIEEVKTLRWEKASWEGRERAAEREAGHAAAELRARADHLEELLQSAEADGRESQAALARAQQDAEQERARAKVERAKADGLRAA 1095
            MAA+ELSELRAELWRTRDDLER+KSRGT  PPSA  SPRRHFDR  H   PS T        E R  DR  RRH H       G++   G+ G+ GGGIRS P          PGS  + +D + RGLG +  +     GR+++  SS       SS G + + G     GSSEEVAAEETLCNLELEGAAF+NWTEEASSIAVRLIEEVK LRWEKASW  RERAAE            +ADHLEE L  AEADGR +Q ALARAQQD E+           A+GLRAA
Sbjct:    1 MAASELSELRAELWRTRDDLERIKSRGT--PPSADCSPRRHFDRRRHRASPSPTLAATTAC-EVRNKDRDYRRHRHSEQHKGDGLEAGGGARGDSGGGIRSXPXXXXXXXXXXPGSGADYDDEAPRGLGGTASSGSSHGGRQLKFGSSRGRVGSASSEGENAAKG-----GSSEEVAAEETLCNLELEGAAFKNWTEEASSIAVRLIEEVKMLRWEKASWAERERAAEXXXXXXXXXXXXQADHLEERLGLAEADGRRAQEALARAQQDVERXXXXXXXXXXXAEGLRAA 282
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7772.16719.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FRQ8_ECTSI1.490e-5754.83Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7772contigL-elsbetiae_contig7772:5350..6848 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-00_003480.1
Exons2
Model size1110
Cds size852
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7772.16719.1prot_L-elsbetiae_contig7772.16719.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7772 5997..6848 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816861.6418216-UTR-L-elsbetiae_contig7772:5349..54361622816861.6418216-UTR-L-elsbetiae_contig7772:5349..5436Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7772 5350..5436 +
1691683868.9697928-UTR-L-elsbetiae_contig7772:5349..54361691683868.9697928-UTR-L-elsbetiae_contig7772:5349..5436Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7772 5350..5436 +
1622816861.655805-UTR-L-elsbetiae_contig7772:5825..59961622816861.655805-UTR-L-elsbetiae_contig7772:5825..5996Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7772 5826..5996 +
1691683868.980566-UTR-L-elsbetiae_contig7772:5825..59961691683868.980566-UTR-L-elsbetiae_contig7772:5825..5996Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7772 5826..5996 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816861.6690223-CDS-L-elsbetiae_contig7772:5996..68481622816861.6690223-CDS-L-elsbetiae_contig7772:5996..6848Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7772 5997..6848 +
1691683868.990031-CDS-L-elsbetiae_contig7772:5996..68481691683868.990031-CDS-L-elsbetiae_contig7772:5996..6848Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7772 5997..6848 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7772.16719.1

>prot_L-elsbetiae_contig7772.16719.1 ID=prot_L-elsbetiae_contig7772.16719.1|Name=mRNA_L-elsbetiae_contig7772.16719.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=284bp
MAATELSELRAELWRTRDDLERMKSRGTGTPPSASRSPRRHFDRGLHPST
TAAAAAAASEGRRTDRSSRRHWHKSIGGVDKRTGSGEDGGGIRSAPTSAP
TSGDSSPGSDVERNDGSSRGLGSSRRANGRRIRVSSSPAARKHPSSRGAS
TSSGEGAPQGSSEEVAAEETLCNLELEGAAFQNWTEEASSIAVRLIEEVK
TLRWEKASWEGRERAAEREAGHAAAELRARADHLEELLQSAEADGRESQA
ALARAQQDAEQERARAKVERAKADGLRAAAAAQQ
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mRNA from alignment at L-elsbetiae_contig7772:5350..6848+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7772.16719.1 ID=mRNA_L-elsbetiae_contig7772.16719.1|Name=mRNA_L-elsbetiae_contig7772.16719.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1499bp|location=Sequence derived from alignment at L-elsbetiae_contig7772:5350..6848+ (Laminarionema elsbetiae ELsaHSoW15)
GGCCCAACGAGACGCTGATAAGGGTGGACCGGCGTGGGTGTGAGAGAGGA
AGGCGAGGGGCTTGGAACTTCAGGCAAAAATCGGCCGGTGAGAGCCGATG
AGATGCACTGATTTTTTGGCAATAGCTGAACACGGCAAGCGTTACTCTCC
GATAGCACCGAGTAACGATGGTTGCGGAGTCAAACAACCACCCCCTCTTC
ACCCTCAGCCACGACTCGGCCCGGTGTAGGGTCGACTCGAATATAATAGG
GCCCGAGCTGTGAATGATGGGCCAGGCCAAGCCGACGTTGACTCGTTGGT
TCGATTTGAACCACGCGGTGCTGTAACGCAGCGGGTTCGGGAGATATGTA
CAACAAACGGAACACACGCCGGCGTTCATGTGAATTCTCCCCAACACCAG
AAGACCAGCAGAATAGAGTGGATACTTCGCCACCTCTTGATTCCCTGCCT
TTTTCATGCCTGCCCTCGAAAAACAGAAGCAGCTCAAAGGTGGTAGATAC
CAGCACGCGGGTACCTACGTCTGCAAAGGCCGCCGCTCCACGGTTTCTCG
CCGAGACGTGTGGCCTGGTTTACCGCAGCGGCACCGTTCGCAAGGCAAGG
TCTGAGCCCGAGACGTAGGCAACAACATATCCCTTTGGTTACGAGACATG
GCGGCGACCGAGCTGTCGGAGCTACGCGCCGAGTTATGGCGAACGCGCGA
CGACCTCGAGCGCATGAAGTCTCGCGGCACGGGCACCCCGCCGAGCGCCA
GCCGATCGCCCCGACGCCATTTCGATCGTGGCCTGCACCCTTCAACCACT
GCTGCTGCTGCTGCTGCTGCCAGCGAAGGGAGAAGGACGGATCGAAGTAG
TCGGCGACATTGGCACAAGAGCATCGGTGGGGTGGACAAGAGAACCGGCA
GCGGTGAGGACGGCGGGGGGATAAGAAGCGCGCCGACCAGCGCGCCGACA
AGCGGAGACTCCTCCCCAGGATCGGACGTCGAAAGAAACGACGGCAGCAG
CAGAGGTCTGGGGTCATCGAGGAGGGCTAACGGCCGCCGAATACGGGTCT
CTTCCTCTCCCGCCGCTCGAAAGCACCCAAGCAGTCGTGGCGCCAGCACG
AGCTCGGGCGAGGGCGCGCCGCAAGGCTCGTCGGAGGAGGTCGCAGCGGA
GGAGACCCTCTGCAACCTGGAGCTGGAGGGCGCGGCGTTCCAGAACTGGA
CCGAGGAAGCCTCTTCCATAGCTGTCCGCCTCATCGAGGAGGTCAAGACG
CTCCGCTGGGAGAAGGCCAGCTGGGAGGGCAGGGAGCGCGCGGCGGAGCG
CGAGGCGGGGCACGCGGCGGCGGAGCTGAGGGCGCGGGCCGACCACCTGG
AGGAGCTCCTGCAGTCGGCCGAGGCGGACGGGCGGGAGTCGCAGGCGGCG
CTGGCGCGGGCGCAGCAGGACGCAGAACAGGAGCGGGCCCGGGCGAAGGT
GGAGCGAGCAAAGGCCGACGGTCTTCGAGCGGCGGCAGCGGCGCAGCAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7772:5350..6848+

>mRNA_L-elsbetiae_contig7772.16719.1 ID=mRNA_L-elsbetiae_contig7772.16719.1|Name=mRNA_L-elsbetiae_contig7772.16719.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1704bp|location=Sequence derived from alignment at L-elsbetiae_contig7772:5350..6848+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGCGGCGACCGAGCTGTCGGAGCTACGCGCCGAGTTATGGCGAACGCG
CGACGACCTCGAGCGCATGAAGTCTCGCGGCACGGGCACCCCGCCGAGCG
CCAGCCGATCGCCCCGACGCCATTTCGATCGTGGCCTGCACCCTTCAACC
ACTGCTGCTGCTGCTGCTGCTGCCAGCGAAGGGAGAAGGACGGATCGAAG
TAGTCGGCGACATTGGCACAAGAGCATCGGTGGGGTGGACAAGAGAACCG
GCAGCGGTGAGGACGGCGGGGGGATAAGAAGCGCGCCGACCAGCGCGCCG
ACAAGCGGAGACTCCTCCCCAGGATCGGACGTCGAAAGAAACGACGGCAG
CAGCAGAGGTCTGGGGTCATCGAGGAGGGCTAACGGCCGCCGAATACGGG
TCTCTTCCTCTCCCGCCGCTCGAAAGCACCCAAGCAGTCGTGGCGCCAGC
ACGAGCTCGGGCGAGGGCGCGCCGCAAGGCTCGTCGGAGGAGGTCGCAGC
GGAGGAGACCCTCTGCAACCTGGAGCTGGAGGGCGCGGCGTTCCAGAACT
GGACCGAGGAAGCCTCTTCCATAGCTGTCCGCCTCATCGAGGAGGTCAAG
ACGCTCCGCTGGGAGAAGGCCAGCTGGGAGGGCAGGGAGCGCGCGGCGGA
GCGCGAGGCGGGGCACGCGGCGGCGGAGCTGAGGGCGCGGGCCGACCACC
TGGAGGAGCTCCTGCAGTCGGCCGAGGCGGACGGGCGGGAGTCGCAGGCG
GCGCTGGCGCGGGCGCAGCAGGACGCAGAACAGGAGCGGGCCCGGGCGAA
GGTGGAGCGAGCAAAGGCCGACGGTCTTCGAGCGGCGGCAGCGGCGCAGC
AGATGGCGGCGACCGAGCTGTCGGAGCTACGCGCCGAGTTATGGCGAACG
CGCGACGACCTCGAGCGCATGAAGTCTCGCGGCACGGGCACCCCGCCGAG
CGCCAGCCGATCGCCCCGACGCCATTTCGATCGTGGCCTGCACCCTTCAA
CCACTGCTGCTGCTGCTGCTGCTGCCAGCGAAGGGAGAAGGACGGATCGA
AGTAGTCGGCGACATTGGCACAAGAGCATCGGTGGGGTGGACAAGAGAAC
CGGCAGCGGTGAGGACGGCGGGGGGATAAGAAGCGCGCCGACCAGCGCGC
CGACAAGCGGAGACTCCTCCCCAGGATCGGACGTCGAAAGAAACGACGGC
AGCAGCAGAGGTCTGGGGTCATCGAGGAGGGCTAACGGCCGCCGAATACG
GGTCTCTTCCTCTCCCGCCGCTCGAAAGCACCCAAGCAGTCGTGGCGCCA
GCACGAGCTCGGGCGAGGGCGCGCCGCAAGGCTCGTCGGAGGAGGTCGCA
GCGGAGGAGACCCTCTGCAACCTGGAGCTGGAGGGCGCGGCGTTCCAGAA
CTGGACCGAGGAAGCCTCTTCCATAGCTGTCCGCCTCATCGAGGAGGTCA
AGACGCTCCGCTGGGAGAAGGCCAGCTGGGAGGGCAGGGAGCGCGCGGCG
GAGCGCGAGGCGGGGCACGCGGCGGCGGAGCTGAGGGCGCGGGCCGACCA
CCTGGAGGAGCTCCTGCAGTCGGCCGAGGCGGACGGGCGGGAGTCGCAGG
CGGCGCTGGCGCGGGCGCAGCAGGACGCAGAACAGGAGCGGGCCCGGGCG
AAGGTGGAGCGAGCAAAGGCCGACGGTCTTCGAGCGGCGGCAGCGGCGCA
GCAG
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