mRNA_L-elsbetiae_contig777.16713.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig777.16713.1
Unique NamemRNA_L-elsbetiae_contig777.16713.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig777.16713.1 vs. uniprot
Match: D8LSC5_ECTSI (EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSC5_ECTSI)

HSP 1 Score: 70.5 bits (171), Expect = 9.390e-13
Identity = 43/81 (53.09%), Postives = 48/81 (59.26%), Query Frame = 3 
Query:    3 ATGSQLHSLEATRRLLMMVKAVHAVSWLWACDVPSAIHAAEEGAGKAKRAISTPLICISPILRRRAGKKTRVLLAALSRHS 245
            AT  QLH L+A RRLL+ V AVHAVSWLW  D PS +HA E   G   R    PL    PIL+RRA K   V +A L R S
Sbjct:  128 ATEEQLHRLQAIRRLLLRVDAVHAVSWLWPSDAPSIVHAVERSCGPEPR--RPPLSLTLPILKRRA-KTCHVFVATLLRSS 205
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BLAST of mRNA_L-elsbetiae_contig777.16713.1 vs. uniprot
Match: A0A6H5KJA9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJA9_9PHAE)

HSP 1 Score: 66.2 bits (160), Expect = 8.890e-11
Identity = 42/84 (50.00%), Postives = 53/84 (63.10%), Query Frame = 3 
Query:    3 ATGSQLHSLEATRRLLMMVKAVHAVSWLWACDVPSAIHAAEEGAGKAKRAISTPLICISPILRRRAGKKTRVLLAALSRHSGKP 254
            A+  QLH LEA RRLL+ V+AVHAVSWLW  D+ +   AA  G  +   AIST +     + RRRA +  +V LAAL R+S KP
Sbjct:  354 ASPEQLHKLEAIRRLLLRVEAVHAVSWLWPSDISTITRAAARGTDRTT-AISTAVTLPMLVTRRRA-RGRKVPLAALLRYSSKP 435
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BLAST of mRNA_L-elsbetiae_contig777.16713.1 vs. uniprot
Match: A0A6H5JMS6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMS6_9PHAE)

HSP 1 Score: 60.8 bits (146), Expect = 5.550e-9
Identity = 36/80 (45.00%), Postives = 54/80 (67.50%), Query Frame = 3 
Query:    6 TGSQLHSLEATRRLLMMVKAVHAVSWLWACDVPSAIHAAEEGAGK--AKRAISTPLICISPILRRRAGKKTRVLLAALSR 239
            T  QL++LEA RRLL+ V+AVHAVSWLW+ D+ +  ++  +G G+  +K    TPL+ ++   R R+ ++  VLLAAL R
Sbjct:  211 TEEQLNALEAIRRLLLRVEAVHAVSWLWSSDISTFTYSTAQGTGRTTSKSTPGTPLV-LTMRQRARSRRELEVLLAALLR 289
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BLAST of mRNA_L-elsbetiae_contig777.16713.1 vs. uniprot
Match: D7FVU3_ECTSI (EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVU3_ECTSI)

HSP 1 Score: 58.5 bits (140), Expect = 4.560e-8
Identity = 37/83 (44.58%), Postives = 50/83 (60.24%), Query Frame = 3 
Query:    3 ATGSQLHSLEATRRLLMMVKAVHAVSWLWACDVPSAIHAAEEGAGKAKRAISTPLICISPILRRRAGKKTRVLLAALSRHSGK 251
            AT  QL  LEATRR+L+ V AVHAVSW+W  D P  + A    + +  +   T L  + P+LRRRAG++  +L   L R+S K
Sbjct:  326 ATDEQLLRLEATRRVLLRVVAVHAVSWIWPSDAP--LLARPANSPRTAKHSPTQLTTVLPVLRRRAGRRA-LLWDTLFRYSKK 405
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BLAST of mRNA_L-elsbetiae_contig777.16713.1 vs. uniprot
Match: D7G1Y3_ECTSI (EsV-1-199 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G1Y3_ECTSI)

HSP 1 Score: 50.1 bits (118), Expect = 4.400e-5
Identity = 38/79 (48.10%), Postives = 46/79 (58.23%), Query Frame = 3 
Query:   15 QLHSLEATRRLLMMVKAVHAVSWLWACDVPSAI--HAAEEGAGKAKRAISTPLICISPILRRRAGKKTRVLLAALSRHS 245
            QL  LEA RRLL+ V+AVHA SW+W      ++   AAE  AG       T L     ILRRRA ++  VLL ALSR+S
Sbjct:  298 QLGRLEAVRRLLLRVEAVHATSWVWPSSAAGSVAQDAAEVKAGAETE--PTRLTSTLQILRRRATRRG-VLLRALSRYS 373
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig777.16713.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D8LSC5_ECTSI9.390e-1353.09EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
A0A6H5KJA9_9PHAE8.890e-1150.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JMS6_9PHAE5.550e-945.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FVU3_ECTSI4.560e-844.58EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
D7G1Y3_ECTSI4.400e-548.10EsV-1-199 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G1... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig777contigL-elsbetiae_contig777:17875..18596 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons2
Model size265
Cds size210
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig777.16713.1prot_L-elsbetiae_contig777.16713.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig777 17880..18546 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816861.137681-UTR-L-elsbetiae_contig777:17874..178791622816861.137681-UTR-L-elsbetiae_contig777:17874..17879Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig777 17875..17879 -
1691683868.5757372-UTR-L-elsbetiae_contig777:17874..178791691683868.5757372-UTR-L-elsbetiae_contig777:17874..17879Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig777 17875..17879 -
1622816861.1779552-UTR-L-elsbetiae_contig777:18546..185961622816861.1779552-UTR-L-elsbetiae_contig777:18546..18596Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig777 18547..18596 -
1691683868.6136074-UTR-L-elsbetiae_contig777:18546..185961691683868.6136074-UTR-L-elsbetiae_contig777:18546..18596Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig777 18547..18596 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816861.148024-CDS-L-elsbetiae_contig777:17879..179011622816861.148024-CDS-L-elsbetiae_contig777:17879..17901Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig777 17880..17901 -
1691683868.586993-CDS-L-elsbetiae_contig777:17879..179011691683868.586993-CDS-L-elsbetiae_contig777:17879..17901Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig777 17880..17901 -
1622816861.1596587-CDS-L-elsbetiae_contig777:18358..185461622816861.1596587-CDS-L-elsbetiae_contig777:18358..18546Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig777 18359..18546 -
1691683868.5997732-CDS-L-elsbetiae_contig777:18358..185461691683868.5997732-CDS-L-elsbetiae_contig777:18358..18546Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig777 18359..18546 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig777.16713.1

>prot_L-elsbetiae_contig777.16713.1 ID=prot_L-elsbetiae_contig777.16713.1|Name=mRNA_L-elsbetiae_contig777.16713.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=70bp
MMVKAVHAVSWLWACDVPSAIHAAEEGAGKAKRAISTPLICISPILRRRA
GKKTRVLLAALSRHSGKPY*
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mRNA from alignment at L-elsbetiae_contig777:17875..18596-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig777.16713.1 ID=mRNA_L-elsbetiae_contig777.16713.1|Name=mRNA_L-elsbetiae_contig777.16713.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=722bp|location=Sequence derived from alignment at L-elsbetiae_contig777:17875..18596- (Laminarionema elsbetiae ELsaHSoW15)
ACGCTACAGGGAGCCAGCTACACAGCCTGGAGGCTACGCGGCGGTTGCTG
ATGATGGTGAAGGCCGTTCATGCGGTCTCTTGGCTATGGGCATGCGACGT
GCCCTCCGCCATCCACGCTGCTGAAGAGGGTGCAGGCAAGGCCAAGAGAG
CAATTTCGACCCCGCTGATATGTATTTCGCCCATCTTGAGGCGAAGGGCT
GGGAAGAAGACCAGGGTGCTCTTAGCAGCCCTGTCCAGGTGGGTGCCATG
TGTCGATGATCCATAGGATGGTGAGATGGCTTCTGAACATAGACTACATA
GTTTGAAGCCAGAGAGAGCGGTGGGCTGATGGTTGGTGCGCTAGGGTGTC
CTGGCGCCTTTTCCCTTCCTGCCCTCGCTGCTGTCGTGTCCCTGTTCTAT
GTTATTGTTTTTCCGGGGCTGAATACTGCTATCGTGCTCCCGCAGCCAAT
GTGTTTTCTGTGGGCGTAACGGCGCTGCGTCGTATCTATCTTCTCGAAAC
AGTGTGGCAGACATTCAGGAAGTGTACATAATCGTGTGCCTAACCGCTTC
CTTGCCCATGTTGTGTACCTTCTGAAGGACTAAACTCCTAAAACAGCCGG
CGGCCATGTTCGCGCCGAACCATCGACAAACCCAATGTTTTGTCCATGAC
ACGTTCTTCCCCGCTCGCCGTGTTATCTCACCCGCTTTTTGACAGGCATT
CGGGGAAGCCTTACTGACGGAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig777:17875..18596-

>mRNA_L-elsbetiae_contig777.16713.1 ID=mRNA_L-elsbetiae_contig777.16713.1|Name=mRNA_L-elsbetiae_contig777.16713.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=420bp|location=Sequence derived from alignment at L-elsbetiae_contig777:17875..18596- (Laminarionema elsbetiae ELsaHSoW15)
ATGATGGTGAAGGCCGTTCATGCGGTCTCTTGGCTATGGGCATGCGACGT
GCCCTCCGCCATCCACGCTGCTGAAGAGGGTGCAGGCAAGGCCAAGAGAG
CAATTTCGACCCCGCTGATATGTATTTCGCCCATCTTGAGGCGAAGGGCT
GGGAAGAAGACCAGGGTGCTCTTAGCAGCCCTGTCCAGATGATGGTGAAG
GCCGTTCATGCGGTCTCTTGGCTATGGGCATGCGACGTGCCCTCCGCCAT
CCACGCTGCTGAAGAGGGTGCAGGCAAGGCCAAGAGAGCAATTTCGACCC
CGCTGATATGTATTTCGCCCATCTTGAGGCGAAGGGCTGGGAAGAAGACC
AGGGTGCTCTTAGCAGCCCTGTCCAGGCATTCGGGGAAGCCTTACTGAGC
ATTCGGGGAAGCCTTACTGA
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