mRNA_L-elsbetiae_contig7765.16709.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7765.16709.1
Unique NamemRNA_L-elsbetiae_contig7765.16709.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig7765.16709.1 vs. uniprot
Match: A0A6H5JIN4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIN4_9PHAE)

HSP 1 Score: 155 bits (393), Expect = 1.740e-47
Identity = 80/87 (91.95%), Postives = 83/87 (95.40%), Query Frame = 1
Query:    7 GVFDERILVPETTDQFLWILIVAAFGAFFAAFGIGANDVANAFATSVGAKALTIKQAVVLAGIFEFLGAVLLGSHVTKTIRKGIADV 267
            G++ ERILVPETTDQFLWILIV AFGAFFAAFGIGANDVANAFATSVGAKALTIKQAV+LAGIFEFLGAV LGSHVTKTIR GIADV
Sbjct:    4 GLYAERILVPETTDQFLWILIVGAFGAFFAAFGIGANDVANAFATSVGAKALTIKQAVILAGIFEFLGAVFLGSHVTKTIRSGIADV 90          
BLAST of mRNA_L-elsbetiae_contig7765.16709.1 vs. uniprot
Match: D7G5U7_ECTSI (High affinity phosphate transporter n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5U7_ECTSI)

HSP 1 Score: 152 bits (383), Expect = 6.760e-45
Identity = 78/83 (93.98%), Postives = 80/83 (96.39%), Query Frame = 1
Query:   19 ERILVPETTDQFLWILIVAAFGAFFAAFGIGANDVANAFATSVGAKALTIKQAVVLAGIFEFLGAVLLGSHVTKTIRKGIADV 267
            ERIL PE TDQFLWILIVAAFGAFFAAFGIGANDVANAFATSVGAKALTIKQAVVLAG+FEFLGAV LGSHVTKTIRKGIAD+
Sbjct:   33 ERILAPEATDQFLWILIVAAFGAFFAAFGIGANDVANAFATSVGAKALTIKQAVVLAGVFEFLGAVFLGSHVTKTIRKGIADI 115          
BLAST of mRNA_L-elsbetiae_contig7765.16709.1 vs. uniprot
Match: A0A6H5JNE7_9PHAE (Phosphate transporter n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNE7_9PHAE)

HSP 1 Score: 158 bits (400), Expect = 2.720e-44
Identity = 81/89 (91.01%), Postives = 85/89 (95.51%), Query Frame = 1
Query:    1 MDGVFDERILVPETTDQFLWILIVAAFGAFFAAFGIGANDVANAFATSVGAKALTIKQAVVLAGIFEFLGAVLLGSHVTKTIRKGIADV 267
            MDGVF+ERIL PETTDQ+LWILIVA+FGAFFAAFGIGANDVANAFATSVGAKALTIKQAVVLA IFEF GAV LGSHVTKTIRKGIAD+
Sbjct:    1 MDGVFEERILAPETTDQWLWILIVASFGAFFAAFGIGANDVANAFATSVGAKALTIKQAVVLAAIFEFAGAVFLGSHVTKTIRKGIADI 89          
BLAST of mRNA_L-elsbetiae_contig7765.16709.1 vs. uniprot
Match: D7G0K9_ECTSI (Phosphate transporter n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0K9_ECTSI)

HSP 1 Score: 150 bits (379), Expect = 3.110e-41
Identity = 77/86 (89.53%), Postives = 80/86 (93.02%), Query Frame = 1
Query:    7 GVFDERILVPETTDQFLWILIVAAFGAFFAAFGIGANDVANAFATSVGAKALTIKQAVVLAGIFEFLGAVLLGSHVTKTIRKGIAD 264
            G++ ERIL PETTD FLWI+IV AFGAFFAAFGIGANDVANAFATSVGAKALTIKQAVVLAGIFEFLGAV LGSHVTKTIR GIAD
Sbjct:    4 GLYTERILAPETTDHFLWIVIVGAFGAFFAAFGIGANDVANAFATSVGAKALTIKQAVVLAGIFEFLGAVFLGSHVTKTIRSGIAD 89          
BLAST of mRNA_L-elsbetiae_contig7765.16709.1 vs. uniprot
Match: D7FZJ7_ECTSI (Phosphate transporter n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZJ7_ECTSI)

HSP 1 Score: 139 bits (349), Expect = 6.730e-37
Identity = 71/87 (81.61%), Postives = 77/87 (88.51%), Query Frame = 1
Query:    7 GVFDERILVPETTDQFLWILIVAAFGAFFAAFGIGANDVANAFATSVGAKALTIKQAVVLAGIFEFLGAVLLGSHVTKTIRKGIADV 267
            G+  ERIL P+TT+ FLWILIV  FGAFFAAFGIGANDVANAFATSVGAKALT++QAVVLAGIFEFLGAV LGSHVT TIR G AD+
Sbjct:    4 GLNAERILAPDTTNGFLWILIVGTFGAFFAAFGIGANDVANAFATSVGAKALTLRQAVVLAGIFEFLGAVFLGSHVTSTIRSGTADI 90          
BLAST of mRNA_L-elsbetiae_contig7765.16709.1 vs. uniprot
Match: D7FWT9_ECTSI (Phosphate transporter n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWT9_ECTSI)

HSP 1 Score: 137 bits (344), Expect = 3.970e-36
Identity = 69/86 (80.23%), Postives = 76/86 (88.37%), Query Frame = 1
Query:    7 GVFDERILVPETTDQFLWILIVAAFGAFFAAFGIGANDVANAFATSVGAKALTIKQAVVLAGIFEFLGAVLLGSHVTKTIRKGIAD 264
            GV DERIL P  T +FLWI+IV++ GA FAAFGIGAND+ANAFATSVGA+ALTIKQAVVLAG+FEFLGAV LGSHV KTIR GIAD
Sbjct:    4 GVLDERILAPAVTSEFLWIVIVSSIGAVFAAFGIGANDLANAFATSVGARALTIKQAVVLAGVFEFLGAVFLGSHVAKTIRSGIAD 89          
BLAST of mRNA_L-elsbetiae_contig7765.16709.1 vs. uniprot
Match: D8LJQ3_ECTSI (Pho4 high affinity phosphate transporter, probable (IC) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJQ3_ECTSI)

HSP 1 Score: 122 bits (307), Expect = 1.300e-34
Identity = 59/93 (63.44%), Postives = 76/93 (81.72%), Query Frame = 1
Query:    1 MDGVFDERILVPETTDQFLWILIVAAFGAFFAAFGIGANDVANAFATSVGAKALTIKQAVVLAGIFEFLGAVLLGSHVTKTIRKGIADVSFVY 279
            M      R+L PE +DQ+LWI++V AFG+F AAFGIGANDVANAF+TSVGA+A+T+KQA+VLAG+FEFLGA+LLG+ VTK IR+ I +   +Y
Sbjct:    1 MSEALQPRMLAPEASDQWLWIVVVGAFGSFLAAFGIGANDVANAFSTSVGARAVTLKQAIVLAGVFEFLGALLLGAPVTKAIRENIVNSRLIY 93          
BLAST of mRNA_L-elsbetiae_contig7765.16709.1 vs. uniprot
Match: A0A6U1NDP7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A6U1NDP7_9STRA)

HSP 1 Score: 114 bits (286), Expect = 2.670e-30
Identity = 58/74 (78.38%), Postives = 64/74 (86.49%), Query Frame = 1
Query:   46 DQFLWILIVAAFGAFFAAFGIGANDVANAFATSVGAKALTIKQAVVLAGIFEFLGAVLLGSHVTKTIRKGIADV 267
            D +LWI+IV  F A F A+GIGANDVANAF+TSVGAK LT+KQAV+L GIFEFLGA L GSHVTKTIRKGIADV
Sbjct:    7 DDYLWIVIVGGFLAVFTAYGIGANDVANAFSTSVGAKTLTLKQAVILGGIFEFLGAFLFGSHVTKTIRKGIADV 80          
BLAST of mRNA_L-elsbetiae_contig7765.16709.1 vs. uniprot
Match: A0A7S3Y1S0_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y1S0_HETAK)

HSP 1 Score: 108 bits (271), Expect = 7.680e-29
Identity = 57/86 (66.28%), Postives = 68/86 (79.07%), Query Frame = 1
Query:   13 FDERIL-VPETTDQFLWILIVAAFGAFFAAFGIGANDVANAFATSVGAKALTIKQAVVLAGIFEFLGAVLLGSHVTKTIRKGIADV 267
            +D R+L        +LWI++V  F A F ++GIGANDVANAFATSVGAK L++K AV+LA IFEF GAVLLGSHVTKTIRKGIAD+
Sbjct:    3 YDARMLEATYEPKDYLWIVVVGGFLAVFCSYGIGANDVANAFATSVGAKTLSVKHAVILAAIFEFGGAVLLGSHVTKTIRKGIADI 88          
BLAST of mRNA_L-elsbetiae_contig7765.16709.1 vs. uniprot
Match: A0A7S2V1L4_9STRA (Phosphate transporter n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V1L4_9STRA)

HSP 1 Score: 114 bits (286), Expect = 5.840e-28
Identity = 58/74 (78.38%), Postives = 64/74 (86.49%), Query Frame = 1
Query:   46 DQFLWILIVAAFGAFFAAFGIGANDVANAFATSVGAKALTIKQAVVLAGIFEFLGAVLLGSHVTKTIRKGIADV 267
            D +LWI+IV  F A F A+GIGANDVANAF+TSVGAK LT+KQAV+L GIFEFLGA L GSHVTKTIRKGIADV
Sbjct:    7 DDYLWIVIVGGFLAVFTAYGIGANDVANAFSTSVGAKTLTLKQAVILGGIFEFLGAFLFGSHVTKTIRKGIADV 80          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7765.16709.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JIN4_9PHAE1.740e-4791.95Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G5U7_ECTSI6.760e-4593.98High affinity phosphate transporter n=1 Tax=Ectoca... [more]
A0A6H5JNE7_9PHAE2.720e-4491.01Phosphate transporter n=1 Tax=Ectocarpus sp. CCAP ... [more]
D7G0K9_ECTSI3.110e-4189.53Phosphate transporter n=2 Tax=Ectocarpus siliculos... [more]
D7FZJ7_ECTSI6.730e-3781.61Phosphate transporter n=1 Tax=Ectocarpus siliculos... [more]
D7FWT9_ECTSI3.970e-3680.23Phosphate transporter n=1 Tax=Ectocarpus siliculos... [more]
D8LJQ3_ECTSI1.300e-3463.44Pho4 high affinity phosphate transporter, probable... [more]
A0A6U1NDP7_9STRA2.670e-3078.38Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A7S3Y1S0_HETAK7.680e-2966.28Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S2V1L4_9STRA5.840e-2878.38Phosphate transporter n=1 Tax=Fibrocapsa japonica ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7765contigL-elsbetiae_contig7765:8659..8937 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score162.5
Seed ortholog evalue9.2e-38
Seed eggNOG ortholog2880.D7G0K8
Preferred namePHO89
KEGG koko:K01280,ko:K03306,ko:K14640
KEGG TC2.A.20,2.A.20.2
Hectar predicted targeting categorysignal anchor
GOsGO:0003674,GO:0005215,GO:0005315,GO:0005436,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005886,GO:0005887,GO:0006810,GO:0006811,GO:0006812,GO:0006814,GO:0006817,GO:0006820,GO:0008150,GO:0008324,GO:0012505,GO:0015075,GO:0015077,GO:0015081,GO:0015291,GO:0015293,GO:0015294,GO:0015318,GO:0015319,GO:0015370,GO:0015672,GO:0015698,GO:0016020,GO:0016021,GO:0022804,GO:0022857,GO:0022890,GO:0030001,GO:0031224,GO:0031226,GO:0034220,GO:0035435,GO:0035725,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044425,GO:0044444,GO:0044459,GO:0044464,GO:0046873,GO:0051179,GO:0051234,GO:0055085,GO:0071944,GO:0098655,GO:0098656,GO:0098660,GO:0098661,GO:0098662
EggNOG free text desc.inorganic phosphate transmembrane transporter activity
EggNOG OGsCOG0306@1,KOG2493@2759
EC3.4.14.10
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002,ko02000,ko03110
Exons1
Model size279
Cds size279
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816860.7808406-CDS-L-elsbetiae_contig7765:8658..89371622816860.7808406-CDS-L-elsbetiae_contig7765:8658..8937Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7765 8659..8937 +
1691683868.3040402-CDS-L-elsbetiae_contig7765:8658..89371691683868.3040402-CDS-L-elsbetiae_contig7765:8658..8937Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7765 8659..8937 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7765.16709.1prot_L-elsbetiae_contig7765.16709.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7765 8659..8937 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7765.16709.1

>prot_L-elsbetiae_contig7765.16709.1 ID=prot_L-elsbetiae_contig7765.16709.1|Name=mRNA_L-elsbetiae_contig7765.16709.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=93bp
MDGVFDERILVPETTDQFLWILIVAAFGAFFAAFGIGANDVANAFATSVG
AKALTIKQAVVLAGIFEFLGAVLLGSHVTKTIRKGIADVSFVY
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mRNA from alignment at L-elsbetiae_contig7765:8659..8937+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7765.16709.1 ID=mRNA_L-elsbetiae_contig7765.16709.1|Name=mRNA_L-elsbetiae_contig7765.16709.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=279bp|location=Sequence derived from alignment at L-elsbetiae_contig7765:8659..8937+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGACGGTGTGTTTGACGAGCGCATCCTGGTTCCTGAGACCACTGATCA GTTCCTCTGGATCCTCATTGTCGCCGCCTTCGGTGCTTTCTTCGCCGCCT TCGGGATCGGAGCCAATGATGTCGCCAACGCCTTCGCCACGTCCGTCGGC GCCAAGGCCCTGACGATCAAGCAGGCCGTCGTCCTCGCCGGCATCTTCGA GTTCCTGGGCGCCGTGTTGCTTGGCTCCCACGTGACCAAGACCATTCGCA AGGGCATCGCAGACGTGAGTTTTGTGTAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7765:8659..8937+

>mRNA_L-elsbetiae_contig7765.16709.1 ID=mRNA_L-elsbetiae_contig7765.16709.1|Name=mRNA_L-elsbetiae_contig7765.16709.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=558bp|location=Sequence derived from alignment at L-elsbetiae_contig7765:8659..8937+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGACGGTGTGTTTGACGAGCGCATCCTGGTTCCTGAGACCACTGATCA
GTTCCTCTGGATCCTCATTGTCGCCGCCTTCGGTGCTTTCTTCGCCGCCT
TCGGGATCGGAGCCAATGATGTCGCCAACGCCTTCGCCACGTCCGTCGGC
GCCAAGGCCCTGACGATCAAGCAGGCCGTCGTCCTCGCCGGCATCTTCGA
GTTCCTGGGCGCCGTGTTGCTTGGCTCCCACGTGACCAAGACCATTCGCA
AGGGCATCGCAGACGTGAGTTTTGTGTACATGGACGGTGTGTTTGACGAG
CGCATCCTGGTTCCTGAGACCACTGATCAGTTCCTCTGGATCCTCATTGT
CGCCGCCTTCGGTGCTTTCTTCGCCGCCTTCGGGATCGGAGCCAATGATG
TCGCCAACGCCTTCGCCACGTCCGTCGGCGCCAAGGCCCTGACGATCAAG
CAGGCCGTCGTCCTCGCCGGCATCTTCGAGTTCCTGGGCGCCGTGTTGCT
TGGCTCCCACGTGACCAAGACCATTCGCAAGGGCATCGCAGACGTGAGTT
TTGTGTAC
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