mRNA_L-elsbetiae_contig7753.16697.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7753.16697.1
Unique NamemRNA_L-elsbetiae_contig7753.16697.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7753.16697.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7753contigL-elsbetiae_contig7753:3423..3982 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-04_002710.1
Exons1
Model size561
Cds size558
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816859.8975246-CDS-L-elsbetiae_contig7753:3422..39801622816859.8975246-CDS-L-elsbetiae_contig7753:3422..3980Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7753 3423..3980 +
1691683867.6654649-CDS-L-elsbetiae_contig7753:3422..39801691683867.6654649-CDS-L-elsbetiae_contig7753:3422..3980Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7753 3423..3980 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7753.16697.1prot_L-elsbetiae_contig7753.16697.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7753 3423..3980 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7753.16697.1

>prot_L-elsbetiae_contig7753.16697.1 ID=prot_L-elsbetiae_contig7753.16697.1|Name=mRNA_L-elsbetiae_contig7753.16697.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=186bp
ASAAAAYSTRPPPPTPSTQAPAAPKAPVNTKRPGRPAKPPPPTVPAPLPG
TFHGGRGGPRPAMLAPAPIGWGGGRGGGFGSPPLVAPFFPSPYGLSPFAG
APFAGAPPFVARPPFAPSPMAAPPFGAAPFGAAPFGVPPFGAPPFGAPPF
GAPPFGAPPFGALPFAPPFPGFPLQPAAGAWAEAAT
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mRNA from alignment at L-elsbetiae_contig7753:3423..3982+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7753.16697.1 ID=mRNA_L-elsbetiae_contig7753.16697.1|Name=mRNA_L-elsbetiae_contig7753.16697.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=560bp|location=Sequence derived from alignment at L-elsbetiae_contig7753:3423..3982+ (Laminarionema elsbetiae ELsaHSoW15)
GCTAGTGCTGCTGCGGCTTATTCCACACGGCCGCCGCCACCGACACCGTC
TACGCAGGCACCGGCGGCGCCGAAGGCACCCGTCAACACAAAGAGACCCG
GGCGGCCAGCCAAGCCACCGCCGCCGACGGTGCCCGCCCCGCTGCCGGGC
ACGTTCCACGGTGGCCGTGGTGGCCCTCGACCGGCGATGCTTGCGCCGGC
CCCGATAGGGTGGGGTGGTGGGAGGGGCGGCGGCTTTGGGTCTCCTCCGC
TCGTCGCCCCCTTCTTCCCGTCCCCCTACGGCCTCTCTCCCTTCGCCGGT
GCCCCTTTTGCGGGAGCGCCTCCTTTTGTTGCGCGTCCTCCCTTCGCCCC
CTCGCCCATGGCGGCTCCGCCGTTTGGGGCTGCGCCGTTTGGGGCTGCGC
CGTTCGGCGTCCCTCCTTTCGGTGCCCCTCCTTTCGGCGCCCCTCCTTTC
GGCGCCCCTCCTTTCGGCGCCCCTCCTTTCGGCGCCCTTCCGTTTGCTCC
TCCTTTTCCTGGGTTTCCTCTGCAACCTGCGGCGGGAGCGTGGGCGGAAG
CGGCTACGGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7753:3423..3982+

>mRNA_L-elsbetiae_contig7753.16697.1 ID=mRNA_L-elsbetiae_contig7753.16697.1|Name=mRNA_L-elsbetiae_contig7753.16697.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1116bp|location=Sequence derived from alignment at L-elsbetiae_contig7753:3423..3982+ (Laminarionema elsbetiae ELsaHSoW15)
GCTAGTGCTGCTGCGGCTTATTCCACACGGCCGCCGCCACCGACACCGTC
TACGCAGGCACCGGCGGCGCCGAAGGCACCCGTCAACACAAAGAGACCCG
GGCGGCCAGCCAAGCCACCGCCGCCGACGGTGCCCGCCCCGCTGCCGGGC
ACGTTCCACGGTGGCCGTGGTGGCCCTCGACCGGCGATGCTTGCGCCGGC
CCCGATAGGGTGGGGTGGTGGGAGGGGCGGCGGCTTTGGGTCTCCTCCGC
TCGTCGCCCCCTTCTTCCCGTCCCCCTACGGCCTCTCTCCCTTCGCCGGT
GCCCCTTTTGCGGGAGCGCCTCCTTTTGTTGCGCGTCCTCCCTTCGCCCC
CTCGCCCATGGCGGCTCCGCCGTTTGGGGCTGCGCCGTTTGGGGCTGCGC
CGTTCGGCGTCCCTCCTTTCGGTGCCCCTCCTTTCGGCGCCCCTCCTTTC
GGCGCCCCTCCTTTCGGCGCCCCTCCTTTCGGCGCCCTTCCGTTTGCTCC
TCCTTTTCCTGGGTTTCCTCTGCAACCTGCGGCGGGAGCGTGGGCGGAAG
CGGCTACGGCTAGTGCTGCTGCGGCTTATTCCACACGGCCGCCGCCACCG
ACACCGTCTACGCAGGCACCGGCGGCGCCGAAGGCACCCGTCAACACAAA
GAGACCCGGGCGGCCAGCCAAGCCACCGCCGCCGACGGTGCCCGCCCCGC
TGCCGGGCACGTTCCACGGTGGCCGTGGTGGCCCTCGACCGGCGATGCTT
GCGCCGGCCCCGATAGGGTGGGGTGGTGGGAGGGGCGGCGGCTTTGGGTC
TCCTCCGCTCGTCGCCCCCTTCTTCCCGTCCCCCTACGGCCTCTCTCCCT
TCGCCGGTGCCCCTTTTGCGGGAGCGCCTCCTTTTGTTGCGCGTCCTCCC
TTCGCCCCCTCGCCCATGGCGGCTCCGCCGTTTGGGGCTGCGCCGTTTGG
GGCTGCGCCGTTCGGCGTCCCTCCTTTCGGTGCCCCTCCTTTCGGCGCCC
CTCCTTTCGGCGCCCCTCCTTTCGGCGCCCCTCCTTTCGGCGCCCTTCCG
TTTGCTCCTCCTTTTCCTGGGTTTCCTCTGCAACCTGCGGCGGGAGCGTG
GGCGGAAGCGGCTACG
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