mRNA_L-elsbetiae_contig7753.16696.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7753.16696.1
Unique NamemRNA_L-elsbetiae_contig7753.16696.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig7753.16696.1 vs. uniprot
Match: D7FT38_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT38_ECTSI)

HSP 1 Score: 154 bits (388), Expect = 2.420e-39
Identity = 128/271 (47.23%), Postives = 144/271 (53.14%), Query Frame = 1 
Query:   25 MPINENELLELNADLMVLIREKQEQGALADAVSLQIVLHKNLMRLRHYMAAPDMPIPDMPKDWMPPRPRPDTPPAEESDSDPDS-GDEQSSQGRRAARKGKGKQRXXXXXXXXRREGSAPPPTGAVAAPGT-------------LPGFT----------GSANSGNGGERGGVAPGGHGKQPSGEXXXXXXXXXXXXXXXAPSXARRKYKPRRKKSQVGGASASGG-----------------GLGDLLYAGMLTREQTAPHIPSSIPFMP 714
            M I ENELLE+NADLMVLIREKQEQGALADA SLQIVLHKNLMRLR +MAAPD PIP+ PKDWMPP P PDTPPA ESDS+ DS GDEQ  QG RA RKGK    XXXXX   R EG A P   +  A G+             LPGF+          G A +G  G  G     G  +   G                  S + R    R++KS                           GLG LLYAGM + E+ +PHIPSS  F+P
Sbjct:    1 MTITENELLEINADLMVLIREKQEQGALADATSLQIVLHKNLMRLRQFMAAPDEPIPNAPKDWMPPMPTPDTPPAGESDSESDSTGDEQGVQGERATRKGKXX--XXXXXRQPRAEGCAAPGVTSARASGSXXXXXXXXGAVRLLPGFSATETQFVGEHGGAGAGAAGACGAAITDGQQQVRGGVGRSPCAGLPSGTTASLSSPSTR----RKRKSXXXXXXXXXXXXXXXXXXXXXXXXXXXGLGTLLYAGMRSHEKVSPHIPSSSAFVP 265
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7753.16696.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FT38_ECTSI2.420e-3947.23Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7753contigL-elsbetiae_contig7753:1716..3395 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size833
Cds size807
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7753.16696.1prot_L-elsbetiae_contig7753.16696.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7753 1740..3395 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816859.8348825-UTR-L-elsbetiae_contig7753:1715..17391622816859.8348825-UTR-L-elsbetiae_contig7753:1715..1739Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7753 1716..1739 +
1691683867.6161008-UTR-L-elsbetiae_contig7753:1715..17391691683867.6161008-UTR-L-elsbetiae_contig7753:1715..1739Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7753 1716..1739 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816859.8461673-CDS-L-elsbetiae_contig7753:1739..18371622816859.8461673-CDS-L-elsbetiae_contig7753:1739..1837Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7753 1740..1837 +
1691683867.628045-CDS-L-elsbetiae_contig7753:1739..18371691683867.628045-CDS-L-elsbetiae_contig7753:1739..1837Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7753 1740..1837 +
1622816859.8577244-CDS-L-elsbetiae_contig7753:2317..24801622816859.8577244-CDS-L-elsbetiae_contig7753:2317..2480Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7753 2318..2480 +
1691683867.6386068-CDS-L-elsbetiae_contig7753:2317..24801691683867.6386068-CDS-L-elsbetiae_contig7753:2317..2480Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7753 2318..2480 +
1622816859.868474-CDS-L-elsbetiae_contig7753:2849..33951622816859.868474-CDS-L-elsbetiae_contig7753:2849..3395Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7753 2850..3395 +
1691683867.6510794-CDS-L-elsbetiae_contig7753:2849..33951691683867.6510794-CDS-L-elsbetiae_contig7753:2849..3395Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7753 2850..3395 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7753.16696.1

>prot_L-elsbetiae_contig7753.16696.1 ID=prot_L-elsbetiae_contig7753.16696.1|Name=mRNA_L-elsbetiae_contig7753.16696.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=269bp
MPINENELLELNADLMVLIREKQEQGALADAVSLQIVLHKNLMRLRHYMA
APDMPIPDMPKDWMPPRPRPDTPPAEESDSDPDSGDEQSSQGRRAARKGK
GKQRQQRPQQPQRREGSAPPPTGAVAAPGTLPGFTGSANSGNGGERGGVA
PGGHGKQPSGEGEGAGAGGEAGPWPSAPSPARRKYKPRRKKSQVGGASAS
GGGLGDLLYAGMLTREQTAPHIPSSIPFMPMPMTQRATSDYSSAAAARPP
PIPPAPTPPSSFPAHQSPP
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mRNA from alignment at L-elsbetiae_contig7753:1716..3395+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7753.16696.1 ID=mRNA_L-elsbetiae_contig7753.16696.1|Name=mRNA_L-elsbetiae_contig7753.16696.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1680bp|location=Sequence derived from alignment at L-elsbetiae_contig7753:1716..3395+ (Laminarionema elsbetiae ELsaHSoW15)
TGGGCAAAGAGGGAGTGGTGCTCTATGCCAATCAACGAGAATGAGCTGCT
GGAGCTGAACGCTGATTTAATGGTACTGATTCGTGAGAAGCAGGAACAGG
GCGCGCTGGCTGATGCCGTCAGGTGAGAGGTTGATGGAGTATTTGAATTC
GATGTACGGGAGTGTCCATGTATGCATGCTCTGGGTCGTCGTCTACTCTG
TACCCCATGCGTATCGCCGCTCATGTGCTTTTGGTGGCTTTTCATGGTGC
AGGATGGAGTTCTTGTCCACACACGCACACCCACACTCGTACTCAACAGC
AGTAACATTAATTAAGACGTCCAATCCCGTGTTCGTGTCGGAGCAAGGCA
AACGACGAATCCGCAGACGCCGTACAGCTGCATGTAGTGCATATGCAGCT
ACGTCGCTCCACATAGACGCATCAAACACCGCAGGCATTCATTCAGCTGT
GGCGGTGTGCGAATGAATGTGCAGTGCAGGACTTAGGCGCCCCACCCGTA
TGCCGCCGGTGCTCTCATCACGTAGATTACATACCTACACAACACCGCTA
CTTGTCCCGCCGCCGCTCCAACAGTCCCGCCGATTCCTCCACCCAAATGC
AGCCTCCAGATAGTGCTCCACAAGAACCTCATGCGACTCCGGCACTACAT
GGCTGCTCCCGACATGCCGATACCGGACATGCCTAAGGACTGGATGCCCC
CGAGGCCCAGGCCCGACACGCCTCCAGCCGAAGAGAGCGACAGCGACCCC
GACTCTGGCGACGAAGTGAGCCACCCGAAAGGTCCAGAAGATGTAACACA
TTTTCGGAGTTGGTTTCTTGTGGTTGTGCGTTGTGTGATACGCAGCTGCG
GTCGCCGCGCTGGTGTTGGGTGGGATCCCCTCTCGAATCGTTCCAAGGGG
CGCGATTTGGATCTTCAGTGGGTCGGACTTGTTCACTTGTTCTGCGTGCC
GGAATGCTCGCATTCTCTCCCATGGGGTAGTCTGCACGTTTCGATGATTG
TGGCTCATTCCCCGCGGTTCCCGCTGCAAGATGTGTCCGTTGTGCTTGGA
GTGGCCTGATGTCTCTGGCGCGGCCACTTGTCTCTTGTCTCATCCTGCTG
GGGTACTAAAATTTCGCTCGCCTGTTGTTTGCAGCAATCCTCGCAAGGCC
GACGCGCAGCTAGAAAGGGAAAAGGGAAGCAGCGGCAGCAGCGGCCGCAG
CAGCCGCAAAGGAGGGAGGGTTCCGCACCACCACCCACCGGAGCGGTCGC
AGCACCAGGAACTCTCCCAGGCTTCACCGGCAGCGCTAATAGCGGCAACG
GCGGCGAAAGGGGTGGTGTCGCTCCTGGCGGGCATGGGAAGCAGCCTAGC
GGGGAAGGAGAAGGAGCAGGGGCAGGGGGAGAAGCAGGCCCATGGCCAAG
CGCGCCGTCTCCCGCGAGACGAAAGTACAAACCCCGGAGGAAAAAAAGCC
AGGTCGGAGGCGCCAGCGCAAGCGGTGGTGGTCTGGGAGACCTTCTCTAC
GCGGGCATGCTCACGCGCGAGCAGACCGCGCCGCACATCCCCAGCAGCAT
TCCATTCATGCCAATGCCGATGACGCAACGGGCGACCAGCGACTACAGCT
CCGCTGCTGCCGCTCGGCCTCCCCCCATCCCCCCTGCCCCAACGCCCCCT
TCTTCCTTCCCTGCGCACCAATCTCCTCCT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7753:1716..3395+

>mRNA_L-elsbetiae_contig7753.16696.1 ID=mRNA_L-elsbetiae_contig7753.16696.1|Name=mRNA_L-elsbetiae_contig7753.16696.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1614bp|location=Sequence derived from alignment at L-elsbetiae_contig7753:1716..3395+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCCAATCAACGAGAATGAGCTGCTGGAGCTGAACGCTGATTTAATGGT
ACTGATTCGTGAGAAGCAGGAACAGGGCGCGCTGGCTGATGCCGTCAGAT
GCCAATCAACGAGAATGAGCTGCTGGAGCTGAACGCTGATTTAATGGTAC
TGATTCGTGAGAAGCAGGAACAGGGCGCGCTGGCTGATGCCGTCAGCCTC
CAGATAGTGCTCCACAAGAACCTCATGCGACTCCGGCACTACATGGCTGC
TCCCGACATGCCGATACCGGACATGCCTAAGGACTGGATGCCCCCGAGGC
CCAGGCCCGACACGCCTCCAGCCGAAGAGAGCGACAGCGACCCCGACTCT
GGCGACGAACCTCCAGATAGTGCTCCACAAGAACCTCATGCGACTCCGGC
ACTACATGGCTGCTCCCGACATGCCGATACCGGACATGCCTAAGGACTGG
ATGCCCCCGAGGCCCAGGCCCGACACGCCTCCAGCCGAAGAGAGCGACAG
CGACCCCGACTCTGGCGACGAACAATCCTCGCAAGGCCGACGCGCAGCTA
GAAAGGGAAAAGGGAAGCAGCGGCAGCAGCGGCCGCAGCAGCCGCAAAGG
AGGGAGGGTTCCGCACCACCACCCACCGGAGCGGTCGCAGCACCAGGAAC
TCTCCCAGGCTTCACCGGCAGCGCTAATAGCGGCAACGGCGGCGAAAGGG
GTGGTGTCGCTCCTGGCGGGCATGGGAAGCAGCCTAGCGGGGAAGGAGAA
GGAGCAGGGGCAGGGGGAGAAGCAGGCCCATGGCCAAGCGCGCCGTCTCC
CGCGAGACGAAAGTACAAACCCCGGAGGAAAAAAAGCCAGGTCGGAGGCG
CCAGCGCAAGCGGTGGTGGTCTGGGAGACCTTCTCTACGCGGGCATGCTC
ACGCGCGAGCAGACCGCGCCGCACATCCCCAGCAGCATTCCATTCATGCC
AATGCCGATGACGCAACGGGCGACCAGCGACTACAGCTCCGCTGCTGCCG
CTCGGCCTCCCCCCATCCCCCCTGCCCCAACGCCCCCTTCTTCCTTCCCT
GCGCACCAATCTCCTCCTCAATCCTCGCAAGGCCGACGCGCAGCTAGAAA
GGGAAAAGGGAAGCAGCGGCAGCAGCGGCCGCAGCAGCCGCAAAGGAGGG
AGGGTTCCGCACCACCACCCACCGGAGCGGTCGCAGCACCAGGAACTCTC
CCAGGCTTCACCGGCAGCGCTAATAGCGGCAACGGCGGCGAAAGGGGTGG
TGTCGCTCCTGGCGGGCATGGGAAGCAGCCTAGCGGGGAAGGAGAAGGAG
CAGGGGCAGGGGGAGAAGCAGGCCCATGGCCAAGCGCGCCGTCTCCCGCG
AGACGAAAGTACAAACCCCGGAGGAAAAAAAGCCAGGTCGGAGGCGCCAG
CGCAAGCGGTGGTGGTCTGGGAGACCTTCTCTACGCGGGCATGCTCACGC
GCGAGCAGACCGCGCCGCACATCCCCAGCAGCATTCCATTCATGCCAATG
CCGATGACGCAACGGGCGACCAGCGACTACAGCTCCGCTGCTGCCGCTCG
GCCTCCCCCCATCCCCCCTGCCCCAACGCCCCCTTCTTCCTTCCCTGCGC
ACCAATCTCCTCCT
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