mRNA_L-elsbetiae_contig7748.16689.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7748.16689.1
Unique NamemRNA_L-elsbetiae_contig7748.16689.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7748.16689.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7748contigL-elsbetiae_contig7748:1180..2328 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size317
Cds size315
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816859.3069456-CDS-L-elsbetiae_contig7748:1181..13191622816859.3069456-CDS-L-elsbetiae_contig7748:1181..1319Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7748 1182..1319 -
1691683867.1854613-CDS-L-elsbetiae_contig7748:1181..13191691683867.1854613-CDS-L-elsbetiae_contig7748:1181..1319Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7748 1182..1319 -
1622816859.319223-CDS-L-elsbetiae_contig7748:2151..23281622816859.319223-CDS-L-elsbetiae_contig7748:2151..2328Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7748 2152..2328 -
1691683867.19713-CDS-L-elsbetiae_contig7748:2151..23281691683867.19713-CDS-L-elsbetiae_contig7748:2151..2328Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7748 2152..2328 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7748.16689.1prot_L-elsbetiae_contig7748.16689.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7748 1182..2328 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7748.16689.1

>prot_L-elsbetiae_contig7748.16689.1 ID=prot_L-elsbetiae_contig7748.16689.1|Name=mRNA_L-elsbetiae_contig7748.16689.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=105bp
SPSLGVSSPAVAMALGGGAGGGGSRWASALASISDSGRVGSRTARPGTDA
AVAGGNHLQLVMCSNCGHAGVLQSRESFTSGSAIFCSCGTQVVPATPAQL
LTALS
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mRNA from alignment at L-elsbetiae_contig7748:1180..2328-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7748.16689.1 ID=mRNA_L-elsbetiae_contig7748.16689.1|Name=mRNA_L-elsbetiae_contig7748.16689.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1149bp|location=Sequence derived from alignment at L-elsbetiae_contig7748:1180..2328- (Laminarionema elsbetiae ELsaHSoW15)
TCTCCCTCCCTCGGCGTTTCTTCCCCGGCCGTGGCGATGGCCCTAGGCGG
CGGCGCCGGCGGCGGAGGTAGCCGCTGGGCCTCGGCGTTGGCGTCGATTT
CGGACTCGGGTCGGGTCGGGTCCAGGACCGCCCGCCCGGGGACGGACGCC
GCGGTGGCCGGCGGCAACCACCTCCAGGTTTGTTGGGTTTGATTTTTCGT
TGCAAGCCTCCTTGTCGTGGCCGATGCTCGCGTAAACGACATGGAAGAAA
GTGCATGCTCGCGTAAACGCAGGAAGAAAGTGCAACAACTACGTCGGTTC
CGACTGCTGTTGCTTCTTGTACTTGTTGGGGGGGGGGGGGATCTGCATGT
GTCAATATGTCCGCGCGCGCGGAGTACGCGAATGGTGAAGTTTTGTTGCT
GTGTCCACCGATTGTCCCGCGAGCTGTTCAATTGTTTTCTTCGTTTTGGC
GGTCCGTAACAAAAAAACGGGAAGGTTTGTTGAAAAGCCGCGCAGCGGTG
GATACACCGAGACCGACTGTTTATGGAATAAAACTGCCTACAATAAATTG
GTTTAGAGGGCGTTTTACCGACGAGTTGGGGTACGCGGAGAAGTATCTCG
TAGCACGGGGGCCCCAGCATGGCGAGTATACCACTCTGTCGGAAGCCACC
TGTTCACCCAAGAGATTTTTAGAGCTCTAGAGAGGGTATTGTAGCGCAGA
GGAGTGGAGCAAGGTGGACACGTCGAATGGCCTCCAGGAGTTGGTCAGCT
TCAGGAGCTCTCAATATGCCGAGCATTTCGTTCTTTAAATCTAGAACTAG
TATTTGAGAAAATATAAAAGCGAAGAGTGCCGAGAGAGCGGCCACACCGC
GAAACAAGCGACGAAAATGCCCTAAAATAGCCCTTTTTCTTACTCTTTGT
CAGGTTTTAATTGTTGTTTGTCTCCCGCTCCGCTCCGCCGCACGTCCGTC
GTACCCACACGTTGCCTGGCCTCGCTTGCTCGCGCCATAATCTCCGTCCA
TCTCACAAGTTGGTGATGTGCTCCAACTGCGGCCACGCGGGCGTGCTGCA
GTCGCGGGAGTCCTTCACGAGCGGGTCCGCGATCTTCTGCAGCTGCGGAA
CCCAGGTGGTCCCGGCCACGCCGGCGCAGCTTCTCACGGCGCTGTCGAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7748:1180..2328-

>mRNA_L-elsbetiae_contig7748.16689.1 ID=mRNA_L-elsbetiae_contig7748.16689.1|Name=mRNA_L-elsbetiae_contig7748.16689.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=630bp|location=Sequence derived from alignment at L-elsbetiae_contig7748:1180..2328- (Laminarionema elsbetiae ELsaHSoW15)
TCTCCCTCCCTCGGCGTTTCTTCCCCGGCCGTGGCGATGGCCCTAGGCGG
CGGCGCCGGCGGCGGAGGTAGCCGCTGGGCCTCGGCGTTGGCGTCGATTT
CGGACTCGGGTCGGGTCGGGTCCAGGACCGCCCGCCCGGGGACGGACGCC
GCGGTGGCCGGCGGCAACCACCTCCAGTCTCCCTCCCTCGGCGTTTCTTC
CCCGGCCGTGGCGATGGCCCTAGGCGGCGGCGCCGGCGGCGGAGGTAGCC
GCTGGGCCTCGGCGTTGGCGTCGATTTCGGACTCGGGTCGGGTCGGGTCC
AGGACCGCCCGCCCGGGGACGGACGCCGCGGTGGCCGGCGGCAACCACCT
CCAGTTGGTGATGTGCTCCAACTGCGGCCACGCGGGCGTGCTGCAGTCGC
GGGAGTCCTTCACGAGCGGGTCCGCGATCTTCTGCAGCTGCGGAACCCAG
GTGGTCCCGGCCACGCCGGCGCAGCTTCTCACGGCGCTGTCGTTGGTGAT
GTGCTCCAACTGCGGCCACGCGGGCGTGCTGCAGTCGCGGGAGTCCTTCA
CGAGCGGGTCCGCGATCTTCTGCAGCTGCGGAACCCAGGTGGTCCCGGCC
ACGCCGGCGCAGCTTCTCACGGCGCTGTCG
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