mRNA_L-elsbetiae_contig7735.16683.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7735.16683.1
Unique NamemRNA_L-elsbetiae_contig7735.16683.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig7735.16683.1 vs. uniprot
Match: D8LEZ3_ECTSI (Vac14_Fig4_bd domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LEZ3_ECTSI)

HSP 1 Score: 168 bits (425), Expect = 6.100e-47
Identity = 83/89 (93.26%), Postives = 88/89 (98.88%), Query Frame = 1
Query:    1 MADESGVGTPAESPLAPAILRGLGDRSYDKRKNAALEIEALIKTLEDNNETDRICAIIVLLGQDFATSTNPNHRKGGLIGLAASSIGLM 267
            MA++S VGTPAESPLAPAILRGLGDRSYDKRKNAALEIEALIKTLEDNNETDRIC+IIVLLGQDFATSTNPNHRKGGLIGLAA++IGLM
Sbjct:    1 MAEDSSVGTPAESPLAPAILRGLGDRSYDKRKNAALEIEALIKTLEDNNETDRICSIIVLLGQDFATSTNPNHRKGGLIGLAATAIGLM 89          
BLAST of mRNA_L-elsbetiae_contig7735.16683.1 vs. uniprot
Match: A0A7S2F296_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2F296_9STRA)

HSP 1 Score: 140 bits (354), Expect = 2.880e-41
Identity = 67/80 (83.75%), Postives = 75/80 (93.75%), Query Frame = 1
Query:   28 PAESPLAPAILRGLGDRSYDKRKNAALEIEALIKTLEDNNETDRICAIIVLLGQDFATSTNPNHRKGGLIGLAASSIGLM 267
            PAESPL PAILR LGDRSYDKRKNAALEIEALIK L++NN+TDRIC++I +LGQDFATSTN NHRKGGLIGLAA++IGLM
Sbjct:   19 PAESPLPPAILRSLGDRSYDKRKNAALEIEALIKALQENNDTDRICSVIAMLGQDFATSTNANHRKGGLIGLAATAIGLM 98          
BLAST of mRNA_L-elsbetiae_contig7735.16683.1 vs. uniprot
Match: F0YGU5_AURAN (Uncharacterized protein n=2 Tax=Ochrophyta TaxID=2696291 RepID=F0YGU5_AURAN)

HSP 1 Score: 140 bits (353), Expect = 2.020e-39
Identity = 66/83 (79.52%), Postives = 77/83 (92.77%), Query Frame = 1
Query:   19 VGTPAESPLAPAILRGLGDRSYDKRKNAALEIEALIKTLEDNNETDRICAIIVLLGQDFATSTNPNHRKGGLIGLAASSIGLM 267
            + +P+ESPL PAILR LGDRSYDKRKNAALEIEALIK L++NN+TDRIC++I +LGQDFATSTN NHRKGGLIGLAA++IGLM
Sbjct:    9 LSSPSESPLPPAILRSLGDRSYDKRKNAALEIEALIKALQENNDTDRICSVIAMLGQDFATSTNANHRKGGLIGLAATAIGLM 91          
BLAST of mRNA_L-elsbetiae_contig7735.16683.1 vs. uniprot
Match: F0YIP2_AURAN (Vac14_Fig4_bd domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YIP2_AURAN)

HSP 1 Score: 141 bits (355), Expect = 3.230e-37
Identity = 67/83 (80.72%), Postives = 76/83 (91.57%), Query Frame = 1
Query:   19 VGTPAESPLAPAILRGLGDRSYDKRKNAALEIEALIKTLEDNNETDRICAIIVLLGQDFATSTNPNHRKGGLIGLAASSIGLM 267
            V  P+ESPL PAILR LGDRSYDKRKNAALEIEALIK L++NN+TDRIC++I +LGQDFATSTN NHRKGGLIGLAA++IGLM
Sbjct:    9 VSAPSESPLPPAILRSLGDRSYDKRKNAALEIEALIKALQENNDTDRICSVIAMLGQDFATSTNANHRKGGLIGLAATAIGLM 91          
BLAST of mRNA_L-elsbetiae_contig7735.16683.1 vs. uniprot
Match: A0A835YJ67_9STRA (Vacuolar protein 14 C-terminal Fig4p binding-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJ67_9STRA)

HSP 1 Score: 139 bits (351), Expect = 9.770e-37
Identity = 66/80 (82.50%), Postives = 77/80 (96.25%), Query Frame = 1
Query:   28 PAESPLAPAILRGLGDRSYDKRKNAALEIEALIKTLEDNNETDRICAIIVLLGQDFATSTNPNHRKGGLIGLAASSIGLM 267
            PAESPLAPAILRGLGDRSYDKRKNAALEIEA++++L+++ +TDRIC+II LLGQDFATSTN NHRKGGLIGLAA++IGLM
Sbjct:   14 PAESPLAPAILRGLGDRSYDKRKNAALEIEAVVRSLQESRDTDRICSIIALLGQDFATSTNANHRKGGLIGLAATAIGLM 93          
BLAST of mRNA_L-elsbetiae_contig7735.16683.1 vs. uniprot
Match: A0A8J2SHG9_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SHG9_9STRA)

HSP 1 Score: 138 bits (347), Expect = 4.100e-36
Identity = 66/80 (82.50%), Postives = 74/80 (92.50%), Query Frame = 1
Query:   28 PAESPLAPAILRGLGDRSYDKRKNAALEIEALIKTLEDNNETDRICAIIVLLGQDFATSTNPNHRKGGLIGLAASSIGLM 267
            PAESPL PAILR LGDRSYDKRKNAALEIEAL+KTL+  ++TDRIC++I LLGQDFATSTN NHRKGGLIGLAA++IGLM
Sbjct:    6 PAESPLPPAILRSLGDRSYDKRKNAALEIEALVKTLQQKSDTDRICSVIALLGQDFATSTNTNHRKGGLIGLAATAIGLM 85          
BLAST of mRNA_L-elsbetiae_contig7735.16683.1 vs. uniprot
Match: A0A7S3NMZ6_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NMZ6_9STRA)

HSP 1 Score: 135 bits (340), Expect = 4.790e-35
Identity = 64/79 (81.01%), Postives = 74/79 (93.67%), Query Frame = 1
Query:   31 AESPLAPAILRGLGDRSYDKRKNAALEIEALIKTLEDNNETDRICAIIVLLGQDFATSTNPNHRKGGLIGLAASSIGLM 267
            +ESPL PAILR LGDRSYDKRKNAALEIEALIK+L++N +TDRIC++I +LGQDFATSTN NHRKGGLIGLAA++IGLM
Sbjct:   32 SESPLPPAILRSLGDRSYDKRKNAALEIEALIKSLQENTDTDRICSVIAMLGQDFATSTNANHRKGGLIGLAATAIGLM 110          
BLAST of mRNA_L-elsbetiae_contig7735.16683.1 vs. uniprot
Match: A0A7S3XZQ6_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XZQ6_HETAK)

HSP 1 Score: 128 bits (321), Expect = 4.690e-33
Identity = 63/87 (72.41%), Postives = 74/87 (85.06%), Query Frame = 1
Query:    7 DESGVGTPAESPLAPAILRGLGDRSYDKRKNAALEIEALIKTLEDNNETDRICAIIVLLGQDFATSTNPNHRKGGLIGLAASSIGLM 267
            D SG G PAESPL+P ILRGL DRSYDKRKNAA EI  L+K L+++N+TDR+C+I+ +LGQDFATSTN NHRKGGLIGLA  +IGLM
Sbjct:    5 DISGSG-PAESPLSPGILRGLSDRSYDKRKNAAGEIVELVKHLQEDNDTDRVCSIVAMLGQDFATSTNSNHRKGGLIGLAGCAIGLM 90          
BLAST of mRNA_L-elsbetiae_contig7735.16683.1 vs. uniprot
Match: W7TIC2_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TIC2_9STRA)

HSP 1 Score: 103 bits (257), Expect = 3.230e-26
Identity = 49/78 (62.82%), Postives = 62/78 (79.49%), Query Frame = 1
Query:   34 ESPLAPAILRGLGDRSYDKRKNAALEIEALIKTLEDNNETDRICAIIVLLGQDFATSTNPNHRKGGLIGLAASSIGLM 267
            E P+ P I+RGLGDRSY+KRKNAAL++E  +K L + N+  R+ A + LLGQ+F TSTN NHRKGGLI LAA++IGLM
Sbjct:   77 EPPIPPHIIRGLGDRSYEKRKNAALDLEQHVKYLTERNDKTRLQATLHLLGQEFCTSTNSNHRKGGLIALAAAAIGLM 154          
BLAST of mRNA_L-elsbetiae_contig7735.16683.1 vs. uniprot
Match: A0A7S4HSB2_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4HSB2_9STRA)

HSP 1 Score: 107 bits (266), Expect = 4.700e-25
Identity = 50/78 (64.10%), Postives = 65/78 (83.33%), Query Frame = 1
Query:   34 ESPLAPAILRGLGDRSYDKRKNAALEIEALIKTLEDNNETDRICAIIVLLGQDFATSTNPNHRKGGLIGLAASSIGLM 267
            ESPL PA+ R LGDR+YDKRKNAALEIEAL+K+L++ N T  I +++ +L +DF TS N N+RKGGLIG+AA++IGLM
Sbjct:   91 ESPLPPAVQRCLGDRAYDKRKNAALEIEALVKSLQETNNTAMIHSVLAVLSKDFCTSMNANYRKGGLIGIAATAIGLM 168          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7735.16683.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LEZ3_ECTSI6.100e-4793.26Vac14_Fig4_bd domain-containing protein n=2 Tax=Ec... [more]
A0A7S2F296_9STRA2.880e-4183.75Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
F0YGU5_AURAN2.020e-3979.52Uncharacterized protein n=2 Tax=Ochrophyta TaxID=2... [more]
F0YIP2_AURAN3.230e-3780.72Vac14_Fig4_bd domain-containing protein (Fragment)... [more]
A0A835YJ67_9STRA9.770e-3782.50Vacuolar protein 14 C-terminal Fig4p binding-domai... [more]
A0A8J2SHG9_9STRA4.100e-3682.50Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S3NMZ6_9STRA4.790e-3581.01Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A7S3XZQ6_HETAK4.690e-3372.41Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
W7TIC2_9STRA3.230e-2662.82Uncharacterized protein (Fragment) n=1 Tax=Nannoch... [more]
A0A7S4HSB2_9STRA4.700e-2564.10Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7735contigL-elsbetiae_contig7735:581..847 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score167.9
Seed ortholog evalue2.1e-39
Seed eggNOG ortholog2880.D8LEZ3
Preferred nameVAC14
KEGG koko:K10875,ko:K15305
KEGG Pathwayko03440,ko05166,ko05203,map03440,map05166,map05203
Hectar predicted targeting categoryother localisation
GOsGO:0000139,GO:0000306,GO:0000322,GO:0000323,GO:0000324,GO:0000329,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005769,GO:0005770,GO:0005773,GO:0005774,GO:0005794,GO:0005942,GO:0006629,GO:0006644,GO:0006650,GO:0006661,GO:0006793,GO:0006796,GO:0006950,GO:0006970,GO:0007154,GO:0007165,GO:0007267,GO:0008047,GO:0008150,GO:0008152,GO:0008610,GO:0008654,GO:0009058,GO:0009628,GO:0009893,GO:0009987,GO:0010008,GO:0010562,GO:0012505,GO:0016020,GO:0019207,GO:0019209,GO:0019220,GO:0019222,GO:0019637,GO:0019898,GO:0023052,GO:0030154,GO:0030234,GO:0030674,GO:0031090,GO:0031312,GO:0031323,GO:0031325,GO:0031410,GO:0031901,GO:0031902,GO:0031982,GO:0031984,GO:0032502,GO:0032991,GO:0033674,GO:0035032,GO:0038023,GO:0042325,GO:0042327,GO:0043085,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043549,GO:0044093,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044433,GO:0044437,GO:0044440,GO:0044444,GO:0044446,GO:0044464,GO:0045017,GO:0045165,GO:0045168,GO:0045937,GO:0046331,GO:0046474,GO:0046486,GO:0046488,GO:0048518,GO:0048522,GO:0048869,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051174,GO:0051338,GO:0051347,GO:0051716,GO:0060089,GO:0060090,GO:0061695,GO:0065007,GO:0065009,GO:0070772,GO:0071704,GO:0090407,GO:0097708,GO:0098588,GO:0098772,GO:0098791,GO:0098796,GO:0098805,GO:0098852,GO:1901576,GO:1902494,GO:1990234
EggNOG free text desc.phosphatidylinositol biosynthetic process
EggNOG OGsKOG0212@1,KOG0212@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03400
Exons1
Model size267
Cds size267
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816858.9229403-CDS-L-elsbetiae_contig7735:580..8471622816858.9229403-CDS-L-elsbetiae_contig7735:580..847Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7735 581..847 -
1691683866.941674-CDS-L-elsbetiae_contig7735:580..8471691683866.941674-CDS-L-elsbetiae_contig7735:580..847Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7735 581..847 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7735.16683.1prot_L-elsbetiae_contig7735.16683.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7735 581..847 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7735.16683.1

>prot_L-elsbetiae_contig7735.16683.1 ID=prot_L-elsbetiae_contig7735.16683.1|Name=mRNA_L-elsbetiae_contig7735.16683.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=89bp
MADESGVGTPAESPLAPAILRGLGDRSYDKRKNAALEIEALIKTLEDNNE
TDRICAIIVLLGQDFATSTNPNHRKGGLIGLAASSIGLM
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mRNA from alignment at L-elsbetiae_contig7735:581..847-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7735.16683.1 ID=mRNA_L-elsbetiae_contig7735.16683.1|Name=mRNA_L-elsbetiae_contig7735.16683.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=267bp|location=Sequence derived from alignment at L-elsbetiae_contig7735:581..847- (Laminarionema elsbetiae ELsaHSoW15)
ATGGCTGATGAGTCGGGCGTGGGCACCCCAGCGGAGTCTCCGCTGGCACC GGCAATCCTGCGAGGGTTGGGCGACCGTTCCTACGACAAACGCAAGAATG CAGCGCTCGAGATCGAGGCCTTGATCAAGACTCTCGAGGACAACAACGAG ACCGACCGCATCTGCGCTATCATCGTCCTGCTCGGACAGGACTTCGCCAC CTCTACCAACCCGAACCACCGCAAGGGTGGGCTCATTGGTCTCGCTGCGT CTTCGATCGGATTGATG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7735:581..847-

>mRNA_L-elsbetiae_contig7735.16683.1 ID=mRNA_L-elsbetiae_contig7735.16683.1|Name=mRNA_L-elsbetiae_contig7735.16683.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=534bp|location=Sequence derived from alignment at L-elsbetiae_contig7735:581..847- (Laminarionema elsbetiae ELsaHSoW15)
ATGGCTGATGAGTCGGGCGTGGGCACCCCAGCGGAGTCTCCGCTGGCACC
GGCAATCCTGCGAGGGTTGGGCGACCGTTCCTACGACAAACGCAAGAATG
CAGCGCTCGAGATCGAGGCCTTGATCAAGACTCTCGAGGACAACAACGAG
ACCGACCGCATCTGCGCTATCATCGTCCTGCTCGGACAGGACTTCGCCAC
CTCTACCAACCCGAACCACCGCAAGGGTGGGCTCATTGGTCTCGCTGCGT
CTTCGATCGGATTGATGATGGCTGATGAGTCGGGCGTGGGCACCCCAGCG
GAGTCTCCGCTGGCACCGGCAATCCTGCGAGGGTTGGGCGACCGTTCCTA
CGACAAACGCAAGAATGCAGCGCTCGAGATCGAGGCCTTGATCAAGACTC
TCGAGGACAACAACGAGACCGACCGCATCTGCGCTATCATCGTCCTGCTC
GGACAGGACTTCGCCACCTCTACCAACCCGAACCACCGCAAGGGTGGGCT
CATTGGTCTCGCTGCGTCTTCGATCGGATTGATG
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