|
Homology
BLAST of mRNA_L-elsbetiae_contig7732.16681.1 vs. uniprot
Match: D7FQA2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQA2_ECTSI) HSP 1 Score: 353 bits (907), Expect = 2.410e-111 Identity = 238/398 (59.80%), Postives = 280/398 (70.35%), Query Frame = 1
Query: 1 CMSAFETAIEGDLNTQLDAQTEQCAQRWSEEKEKTEAAHAGLVELEELTVARLEGLGQVLKDRQGTVLAALKHEREANTRKILASALSDPLEEGQLLFERQVEETQLEGRRKQRRRLLDLSEQGVQVRQDEIEAALLKAARDQVENLMQVVDKMQTQQTRLLVALQAEKKKVSMMRQHVSNRLGTPSQKEARAAANAAKQETLQSHGKKSTAAKRGKIAALAVEAAATFGKTTANVAEVEDDASEEVDGEHNDNSLGGERDQLSGAELLDVCNFLEDDNLGLRQRLAKLELQRMQKEHGEDDEEPND-DSQLALVLEAKSELQGQLKGLQMANEERSKELERAQG-------VTPGPPAATAIVEATKTVTPEP-ENVYATGNATTDEFKADIEAEAS 1167
CM AF A+EGDL+T+LD T+QC +R EEKEKTEAA AGLVELEE TVARLE LG+VLKDRQ TVL ALKHEREANTRKILAS L DPLEEG+ LF +QVEET+LEG+ KQRRRLLDL+ QGV V+Q+EIEAA+LKA+RD+V+NLMQVVDKMQ QQT+LLV LQAEKK +S MRQHVS RLG E+ AA +E S G K A+K+GK AALAV AA T + + DG+ D QLSG ELL C LE+ N+ LRQRLAKLELQ MQKEHG D++E N DS+L VLE K EL+G+L+GLQMANEERSKELER +G + GP A + + T T TP P + A GN + D+F A IEAE +
Sbjct: 123 CMVAFNKAVEGDLDTRLDTMTQQCTERHIEEKEKTEAAQAGLVELEEQTVARLEALGKVLKDRQETVLVALKHEREANTRKILASTLGDPLEEGRKLFNKQVEETELEGKLKQRRRLLDLNSQGVSVQQEEIEAAMLKASRDEVDNLMQVVDKMQNQQTKLLVTLQAEKKNISAMRQHVSKRLGASVDNESIAAT--PPREGGPSGGIKRHASKKGKTAALAVTAAFTMSNPGEGILD---------DGDSLDVIS-----QLSGIELLHACERLENHNVTLRQRLAKLELQTMQKEHGGDEDELNKTDSRLPRVLETKKELEGKLEGLQMANEERSKELERIRGGGDVPTTKSAGPTTAMSSIPTT-TETPGPVKRPDANGNGS-DDFMATIEAETT 502
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Hectar predicted targeting category | other localisation |
Exons | 6 |
Model size | 1188 |
Cds size | 1185 |
Stop | 1 |
Start | 1 |
Relationships
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622816858.7540483-CDS-L-elsbetiae_contig7732:5025..5274 | 1622816858.7540483-CDS-L-elsbetiae_contig7732:5025..5274 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig7732 5026..5274 - |
1691683866.7974057-CDS-L-elsbetiae_contig7732:5025..5274 | 1691683866.7974057-CDS-L-elsbetiae_contig7732:5025..5274 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig7732 5026..5274 - |
1622816858.766516-CDS-L-elsbetiae_contig7732:5983..6400 | 1622816858.766516-CDS-L-elsbetiae_contig7732:5983..6400 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig7732 5984..6400 - |
1691683866.8076816-CDS-L-elsbetiae_contig7732:5983..6400 | 1691683866.8076816-CDS-L-elsbetiae_contig7732:5983..6400 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig7732 5984..6400 - |
1622816858.7783723-CDS-L-elsbetiae_contig7732:6640..6775 | 1622816858.7783723-CDS-L-elsbetiae_contig7732:6640..6775 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig7732 6641..6775 - |
1691683866.817021-CDS-L-elsbetiae_contig7732:6640..6775 | 1691683866.817021-CDS-L-elsbetiae_contig7732:6640..6775 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig7732 6641..6775 - |
1622816858.7908368-CDS-L-elsbetiae_contig7732:7236..7395 | 1622816858.7908368-CDS-L-elsbetiae_contig7732:7236..7395 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig7732 7237..7395 - |
1691683866.8269067-CDS-L-elsbetiae_contig7732:7236..7395 | 1691683866.8269067-CDS-L-elsbetiae_contig7732:7236..7395 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig7732 7237..7395 - |
1622816858.801661-CDS-L-elsbetiae_contig7732:7744..7906 | 1622816858.801661-CDS-L-elsbetiae_contig7732:7744..7906 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig7732 7745..7906 - |
1691683866.8407178-CDS-L-elsbetiae_contig7732:7744..7906 | 1691683866.8407178-CDS-L-elsbetiae_contig7732:7744..7906 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig7732 7745..7906 - |
1622816858.8145459-CDS-L-elsbetiae_contig7732:8838..8901 | 1622816858.8145459-CDS-L-elsbetiae_contig7732:8838..8901 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig7732 8839..8901 - |
1691683866.8548784-CDS-L-elsbetiae_contig7732:8838..8901 | 1691683866.8548784-CDS-L-elsbetiae_contig7732:8838..8901 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig7732 8839..8901 - |
The following UTR feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622816858.825905-UTR-L-elsbetiae_contig7732:8901..8904 | 1622816858.825905-UTR-L-elsbetiae_contig7732:8901..8904 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig7732 8902..8904 - |
1691683866.8741152-UTR-L-elsbetiae_contig7732:8901..8904 | 1691683866.8741152-UTR-L-elsbetiae_contig7732:8901..8904 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig7732 8902..8904 - |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig7732.16681.1 >prot_L-elsbetiae_contig7732.16681.1 ID=prot_L-elsbetiae_contig7732.16681.1|Name=mRNA_L-elsbetiae_contig7732.16681.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=395bp
MSAFETAIEGDLNTQLDAQTEQCAQRWSEEKEKTEAAHAGLVELEELTVA RLEGLGQVLKDRQGTVLAALKHEREANTRKILASALSDPLEEGQLLFERQ VEETQLEGRRKQRRRLLDLSEQGVQVRQDEIEAALLKAARDQVENLMQVV DKMQTQQTRLLVALQAEKKKVSMMRQHVSNRLGTPSQKEARAAANAAKQE TLQSHGKKSTAAKRGKIAALAVEAAATFGKTTANVAEVEDDASEEVDGEH NDNSLGGERDQLSGAELLDVCNFLEDDNLGLRQRLAKLELQRMQKEHGED DEEPNDDSQLALVLEAKSELQGQLKGLQMANEERSKELERAQGVTPGPPA ATAIVEATKTVTPEPENVYATGNATTDEFKADIEAEASRANRGR* back to topmRNA from alignment at L-elsbetiae_contig7732:5026..8904- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_L-elsbetiae_contig7732.16681.1 ID=mRNA_L-elsbetiae_contig7732.16681.1|Name=mRNA_L-elsbetiae_contig7732.16681.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3879bp|location=Sequence derived from alignment at L-elsbetiae_contig7732:5026..8904- (Laminarionema elsbetiae ELsaHSoW15) TGCATGTCTGCGTTTGAAACCGCCATCGAGGGGGACTTGAACACACAGCT
GGACGCACAGACGGAGGTACAGCCGGCACACGGTCAACAGCTTGCTCTCA
CCCCTCACCAACTGGGTAGTCAATCAAATCGTATACCGTATGCATTTTTC
AATGTTGTGCCTTACTTTGCATCGGATGGAGGCATAGACATTTCACCACG
CCGATAAACGAAAACCCATATCCATCTTTATAGCTCGGTTAATATTTCGT
AGCACTGGGTGTTTGGGGCGATGGCTGTTCACAACGACGGGTCCCGGTGT
ACCGTCGACAACAGCTACTGATAGCCCTATGCATACGCGGTTCGTTACTC
CAACATACGCATGGAAAGTTTGTCCATCCCTCGATAGAAGCAATACTCAT
AGTGTGGCACTGGGCCCATGAATCGCATGTATGTGTCAATAACGTCCCCA
CGTCGGAGAGTCCCAGACATCATTCCCCCTACTCTTTCTCGCCGGCCATG
ACTATACGGGACCCGAGCGCGTAGTCGGGATTCGTTGGTTAGAGGGGCAA
CGGCTTTTAACGTGGAAACAATGGTGTTAAACACCTAGGGAAATACGGCT
GGTTTGCCACCCCAGTTTGCGATATAAAATATACCAGGTGTACCGTAGCG
TTGTTTTGTTGTGTTGCGAACAACAGCACTCGACACTACTTTTGGGGAAT
CGGAAGTACACCGTTACGTATTTTTGCTGTTGGTTTGCTTATTTTTTAGG
TGTTGCGGGGTAAGGAGCCATTCTGACCCGGACAAGCTATCTCCCCTGCT
GTACTTGTTCGAACCATATAGGGGTAGTACAAACTATGTCAATTTAGCGC
CGCCCGCATCGCTAGATACCAGGCGGACTTTAATTACCCCAGGTACGAGA
TCAGACCGCCACCCACCGTCCTTTTCCATGTCTTCGCTTACATGCCCCGT
TTCGTCGACACAAACGGAATCTTCACCTCGGGACGACAACCAATGTAGCA
ATGCGCCCAGCGGTGGAGCGAAGAGAAAGAGAAGACGGAAGCGGCCCATG
CAGGCCTGGTCGAGCTGGAGGAGCTCACGGTGGCGAGGCTCGAGGGGTTG
GGGCAGGTGCTGAAGGATCGACAGGGCACGGTACTGGCCGCGCTTAAACA
CGAGCGTGAGGTGGGTCGGTGGGCCAGTAAGATGCTAGGCCGCTGGCGGG
GTTAGACGGGGATTGAAAACATTGCACGAAGCGGATGCAGGCGTTGTCGA
CGAGTGTTCAGCGTGAGGGGCGGCCAAGTGCACGAAAGGTACAGTTCATG
AATACAAATACTTATCATCCCAACGGGGTGTACGATATATAAGCTATAGG
AATATCGCTTTCGTATGGGATGGGCTGGTTCATGGTGAGCGCCGCGTCTT
GCGCTTCATTATCAGCACACACATACACACGCACATGTGTACACCGACTC
TTGGCGGCGAAAAAAACATGCGCATACTATTTTATTTCAACTCTTTGGAA
ACATCACAGGCAAACACGCGAAAGATCCTGGCGTCAGCGCTAAGCGACCC
GCTAGAAGAAGGCCAATTACTATTCGAACGGCAAGTGGAAGAGACACAGC
TCGAGGGCAGGCGTAAGCAACGGCGTCGGTTGCTGGATCTCAGCGAGCAA
GGGGTGCAGGTCCGACAGGTACAAGTTTATCGCTGAGGCCGTATGTTGAC
TTTCCCGAAAGCCACAACAGTAGTAAGATCCTTTGAGAAGCCGGCTCGTA
GTGCGAGGTAGGCCGGTAGCGCCCCTCTGGAGAGGTAGATTATCAGGTAA
CGCAATTCATCCACCACCAACGGGAAGGGGGGGAAGAGATATCGACGCGC
ATTCCGACTCGGTGGATGTGAAGGCCAAAACTATGAATTGCAACACTACG
CACAGCAGCTTTTGTGAGGCTCCGGTCAGGGGTATACGTTTCTCTTCTGC
TGCTGAGAGCGCTCTGTCCGTCGGCCCAATGCAAGTCAGGGCGTAATTAA
TGCGTGCGACACGGCGTGGTAGAGCACGGGTGGTTTACACACAGCAATTT
CTTGTCTGCGCGCGAGAGGTGGTGGCCGCAGAAACGTGACTTTCTTCTGC
AACGAACGCCTGTTTGTCTTTGATGCCAGGACGAAATCGAGGCGGCGCTG
CTGAAAGCCGCACGGGATCAGGTCGAGAACCTCATGCAGGTGGTGGACAA
GATGCAGACCCAACAGACCAGGCTGCTGGTGGCCCTGCAGGCCGAGAAGA
AAAAAGTCTCCATGGTGAGTGTAGGAAACATAGTGCCCGTGGATACCTTT
TGTACTGGGTGATGTAGACGTGGAGTTGTCCGTAGCACCCGGCCGTTTCG
GTGCTGTCAGTTGCGGTACATGTTTAGTTTGTGGTTATCCCTTACGCAGT
GATATAGGACACCAACACCACCACTAGCAGGAGCTGCAGCCGTGCGGCCA
GAAGAATCAAATTTTCATGCGACCCTGGGTTCCCCCCACCGCTTCTCTCT
TCAGATGCGCCAACATGTTAGCAACCGATTGGGCACTCCATCCCAGAAGG
AGGCAAGAGCAGCAGCAAATGCAGCAAAACAGGAAACCTTACAATCCCAT
GGGAAAAAATCAACGGCCGCAAAAAGAGGGAAAATCGCGGCTTTGGCGGT
GGAAGCAGCTGCCACTTTCGGGAAAACAACCGCGAACGTCGCGGAGGTGG
AAGACGACGCCAGCGAGGAGGTAGACGGCGAGCACAACGACAACAGCCTC
GGTGGAGAAAGAGATCAGCTGTCGGGAGCCGAGCTGCTGGACGTCTGCAA
CTTTCTGGAGGACGACAACCTGGGACTTCGCCAACGCCTGGCCAAGCTAG
AGCTGCAGAGGATGCAGAAAGAGCACGGCGAAGACGACGAAGAGCCGAAT
GACGACTCTCAGTTGGCCCTGGTAATGGTTGGTTCTACACCCTCATTTCG
TGCTCTTTTATTCCACTCACTCTTGTGTTTGATCTTCGCTACAAAAGTCT
ACGCCACACGCTGATCTCGTGGTGAGCCTTTCTACCATCCTACCGGGTTG
GGCGAGAGACTTGTGCAGGTGGAACAGGAGTCAATCCACAAAGGGAGTGC
ACTTCTTTGAGGGATTCGTCTGTTCTGGGAGACGCGACGCTGGCGATTGA
AGGGGCGAAGGGTGCAGTACGAAGTATGGAGTAGTAGTATACCAGTACGT
GGGAAGGAAACTGAAACGTCTCGTGTGGCCATAAAGTTACCATGCCCGCT
TTTTTGTTGAGGAAAACGCTTCGGCATATTTTTGTGAGGCCAAGATAGGC
GTCGCTTAAGATATAGGCGAAAGTCTTCCTCCTTGCACTTCGATGGCTAG
GAAACGGAAAACAACGAAAACCCCAACCAAGACAACTTGTTAGAAGTATT
CGATTCTTCCGGTAGGGAGTTCCGCCACGGCGACAGAGTAAAGACGACAC
GAATAAGCTTGTATTTTTTCTGATAAGGTTTGTTCGATGCGCGTGCCAGG
TCCACCCACGAACCCGTTTGGCCCTATTTGCTGAAACGAGAAAACGAGTA
CTTTGATTGGCACTGCTGACAAGCAGTCTGGACACGCGTACAATAGCGTT
CCCACTTTGGTCTCCCACCAACGTATGCAGGTGCTTGAGGCGAAGAGCGA
ACTGCAGGGGCAGTTGAAGGGGCTTCAGATGGCCAATGAGGAGCGTTCGA
AAGAGCTAGAGCGAGCGCAGGGGGTCACACCAGGACCACCGGCAGCGACC
GCGATCGTCGAAGCCACCAAGACTGTGACGCCAGAACCCGAAAATGTCTA
TGCGACTGGTAATGCTACTACGGACGAGTTCAAGGCCGACATTGAAGCCG
AGGCGAGTAGAGCAAACCGTGGGCGGTAG back to topCoding sequence (CDS) from alignment at L-elsbetiae_contig7732:5026..8904- >mRNA_L-elsbetiae_contig7732.16681.1 ID=mRNA_L-elsbetiae_contig7732.16681.1|Name=mRNA_L-elsbetiae_contig7732.16681.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2370bp|location=Sequence derived from alignment at L-elsbetiae_contig7732:5026..8904- (Laminarionema elsbetiae ELsaHSoW15) ATGTCTGCGTTTGAAACCGCCATCGAGGGGGACTTGAACACACAGCTGGA CGCACAGACGGAGATGTCTGCGTTTGAAACCGCCATCGAGGGGGACTTGA ACACACAGCTGGACGCACAGACGGAGCAATGCGCCCAGCGGTGGAGCGAA GAGAAAGAGAAGACGGAAGCGGCCCATGCAGGCCTGGTCGAGCTGGAGGA GCTCACGGTGGCGAGGCTCGAGGGGTTGGGGCAGGTGCTGAAGGATCGAC AGGGCACGGTACTGGCCGCGCTTAAACACGAGCGTGAGCAATGCGCCCAG CGGTGGAGCGAAGAGAAAGAGAAGACGGAAGCGGCCCATGCAGGCCTGGT CGAGCTGGAGGAGCTCACGGTGGCGAGGCTCGAGGGGTTGGGGCAGGTGC TGAAGGATCGACAGGGCACGGTACTGGCCGCGCTTAAACACGAGCGTGAG GCAAACACGCGAAAGATCCTGGCGTCAGCGCTAAGCGACCCGCTAGAAGA AGGCCAATTACTATTCGAACGGCAAGTGGAAGAGACACAGCTCGAGGGCA GGCGTAAGCAACGGCGTCGGTTGCTGGATCTCAGCGAGCAAGGGGTGCAG GTCCGACAGGCAAACACGCGAAAGATCCTGGCGTCAGCGCTAAGCGACCC GCTAGAAGAAGGCCAATTACTATTCGAACGGCAAGTGGAAGAGACACAGC TCGAGGGCAGGCGTAAGCAACGGCGTCGGTTGCTGGATCTCAGCGAGCAA GGGGTGCAGGTCCGACAGGACGAAATCGAGGCGGCGCTGCTGAAAGCCGC ACGGGATCAGGTCGAGAACCTCATGCAGGTGGTGGACAAGATGCAGACCC AACAGACCAGGCTGCTGGTGGCCCTGCAGGCCGAGAAGAAAAAAGTCTCC ATGGACGAAATCGAGGCGGCGCTGCTGAAAGCCGCACGGGATCAGGTCGA GAACCTCATGCAGGTGGTGGACAAGATGCAGACCCAACAGACCAGGCTGC TGGTGGCCCTGCAGGCCGAGAAGAAAAAAGTCTCCATGATGCGCCAACAT GTTAGCAACCGATTGGGCACTCCATCCCAGAAGGAGGCAAGAGCAGCAGC AAATGCAGCAAAACAGGAAACCTTACAATCCCATGGGAAAAAATCAACGG CCGCAAAAAGAGGGAAAATCGCGGCTTTGGCGGTGGAAGCAGCTGCCACT TTCGGGAAAACAACCGCGAACGTCGCGGAGGTGGAAGACGACGCCAGCGA GGAGGTAGACGGCGAGCACAACGACAACAGCCTCGGTGGAGAAAGAGATC AGCTGTCGGGAGCCGAGCTGCTGGACGTCTGCAACTTTCTGGAGGACGAC AACCTGGGACTTCGCCAACGCCTGGCCAAGCTAGAGCTGCAGAGGATGCA GAAAGAGCACGGCGAAGACGACGAAGAGCCGAATGACGACTCTCAGTTGG CCCTGATGCGCCAACATGTTAGCAACCGATTGGGCACTCCATCCCAGAAG GAGGCAAGAGCAGCAGCAAATGCAGCAAAACAGGAAACCTTACAATCCCA TGGGAAAAAATCAACGGCCGCAAAAAGAGGGAAAATCGCGGCTTTGGCGG TGGAAGCAGCTGCCACTTTCGGGAAAACAACCGCGAACGTCGCGGAGGTG GAAGACGACGCCAGCGAGGAGGTAGACGGCGAGCACAACGACAACAGCCT CGGTGGAGAAAGAGATCAGCTGTCGGGAGCCGAGCTGCTGGACGTCTGCA ACTTTCTGGAGGACGACAACCTGGGACTTCGCCAACGCCTGGCCAAGCTA GAGCTGCAGAGGATGCAGAAAGAGCACGGCGAAGACGACGAAGAGCCGAA TGACGACTCTCAGTTGGCCCTGGTGCTTGAGGCGAAGAGCGAACTGCAGG GGCAGTTGAAGGGGCTTCAGATGGCCAATGAGGAGCGTTCGAAAGAGCTA GAGCGAGCGCAGGGGGTCACACCAGGACCACCGGCAGCGACCGCGATCGT CGAAGCCACCAAGACTGTGACGCCAGAACCCGAAAATGTCTATGCGACTG GTAATGCTACTACGGACGAGTTCAAGGCCGACATTGAAGCCGAGGCGAGT AGAGCAAACCGTGGGCGGTAGGTGCTTGAGGCGAAGAGCGAACTGCAGGG GCAGTTGAAGGGGCTTCAGATGGCCAATGAGGAGCGTTCGAAAGAGCTAG AGCGAGCGCAGGGGGTCACACCAGGACCACCGGCAGCGACCGCGATCGTC GAAGCCACCAAGACTGTGACGCCAGAACCCGAAAATGTCTATGCGACTGG TAATGCTACTACGGACGAGTTCAAGGCCGACATTGAAGCCGAGGCGAGTA GAGCAAACCGTGGGCGGTAG back to top
|