mRNA_L-elsbetiae_contig7728.16676.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7728.16676.1
Unique NamemRNA_L-elsbetiae_contig7728.16676.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig7728.16676.1 vs. uniprot
Match: D7G7T2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7T2_ECTSI)

HSP 1 Score: 226 bits (577), Expect = 5.750e-69
Identity = 119/170 (70.00%), Postives = 133/170 (78.24%), Query Frame = 1 
Query:   94 AASWHAALLLLVLTTLQQLSFC----GSFPAPRCTSKMFKARYPLEGGPPQVKLHVAIIVQDTESIG------NDNEQ---KRWVLFDFLPAEPTAFTTTLKLLTAQDVQGNLRERELRFLPPGSVCVGQSDATLEDMRGFVARYPDRLSLVSNNCVSFVDAFVERHRLE 564
            A  WHAALLLL+L++L+QL FC    G  P  R   KMFKARYPLEGGPPQVKLH+AIIV+D+ S G      N  ++   +R VLFDFLP EPTAF TTL+LLT  DV GNLRERELRFLPPGSV VG+SDAT+ DMRGFVA+YPDRLSLVSNNC SFVDAFV RHRLE
Sbjct:   12 AGPWHAALLLLLLSSLRQLGFCSALLGVAPPHRSNFKMFKARYPLEGGPPQVKLHIAIIVEDSRSTGEKGGRPNSEDRDTGRRLVLFDFLPKEPTAFETTLRLLTGNDVPGNLRERELRFLPPGSVYVGESDATIGDMRGFVAKYPDRLSLVSNNCFSFVDAFVARHRLE 181
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7728.16676.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G7T2_ECTSI5.750e-6970.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7728contigL-elsbetiae_contig7728:5982..7374 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-06_000390.1
Exons1
Model size1393
Cds size528
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7728.16676.1prot_L-elsbetiae_contig7728.16676.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7728 6042..6569 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816858.3123872-UTR-L-elsbetiae_contig7728:5981..60411622816858.3123872-UTR-L-elsbetiae_contig7728:5981..6041Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7728 5982..6041 +
1691683866.4510853-UTR-L-elsbetiae_contig7728:5981..60411691683866.4510853-UTR-L-elsbetiae_contig7728:5981..6041Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7728 5982..6041 +
1622816858.3361633-UTR-L-elsbetiae_contig7728:6569..73741622816858.3361633-UTR-L-elsbetiae_contig7728:6569..7374Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7728 6570..7374 +
1691683866.472969-UTR-L-elsbetiae_contig7728:6569..73741691683866.472969-UTR-L-elsbetiae_contig7728:6569..7374Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7728 6570..7374 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816858.325249-CDS-L-elsbetiae_contig7728:6041..65691622816858.325249-CDS-L-elsbetiae_contig7728:6041..6569Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7728 6042..6569 +
1691683866.4620419-CDS-L-elsbetiae_contig7728:6041..65691691683866.4620419-CDS-L-elsbetiae_contig7728:6041..6569Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7728 6042..6569 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7728.16676.1

>prot_L-elsbetiae_contig7728.16676.1 ID=prot_L-elsbetiae_contig7728.16676.1|Name=mRNA_L-elsbetiae_contig7728.16676.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=176bp
MTLNKGIKSSRAASWHAALLLLVLTTLQQLSFCGSFPAPRCTSKMFKARY
PLEGGPPQVKLHVAIIVQDTESIGNDNEQKRWVLFDFLPAEPTAFTTTLK
LLTAQDVQGNLRERELRFLPPGSVCVGQSDATLEDMRGFVARYPDRLSLV
SNNCVSFVDAFVERHRLEQEGGRYE*
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mRNA from alignment at L-elsbetiae_contig7728:5982..7374+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7728.16676.1 ID=mRNA_L-elsbetiae_contig7728.16676.1|Name=mRNA_L-elsbetiae_contig7728.16676.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1393bp|location=Sequence derived from alignment at L-elsbetiae_contig7728:5982..7374+ (Laminarionema elsbetiae ELsaHSoW15)
CCCGCTTTTGGGCAGCAAAGAAGAGGTGGCGCCAGGAGCCCTGCCGCTCT
AAGATCGAGCATGACGCTGAATAAGGGAATAAAAAGCTCGAGGGCCGCCT
CTTGGCATGCGGCGCTGCTCCTGCTTGTGCTGACGACGCTGCAACAGCTC
AGCTTTTGTGGGTCATTCCCGGCACCAAGATGTACGTCCAAAATGTTCAA
GGCCCGATATCCGCTCGAAGGTGGACCGCCGCAGGTCAAACTGCACGTAG
CCATCATTGTGCAAGATACCGAGAGCATAGGCAACGACAATGAGCAGAAG
CGTTGGGTGCTGTTCGACTTCCTTCCCGCGGAACCCACCGCATTTACCAC
CACCCTGAAGCTCCTCACGGCGCAAGACGTCCAAGGGAACCTGCGAGAGC
GGGAGCTCCGATTTCTGCCTCCCGGGTCGGTGTGCGTGGGGCAAAGCGAT
GCGACGTTAGAGGACATGAGAGGGTTTGTGGCAAGGTATCCCGATCGCTT
ATCGCTTGTCTCGAACAACTGCGTTTCATTTGTCGATGCGTTTGTTGAGA
GGCATCGCCTGGAGCAGGAGGGCGGGCGTTACGAGTAGATGGACCTTTCG
CTAGCAGCTTGTATAACCGCGACGCGGGTTTGCAATGTCGAACGGCTTGT
TTTCAATAATTAAATGTGCATTACAGCTTTAGCCTTACATAGGTTAGGTG
GGGGTGGCGTTTGCAGCAGAGACTGGTTTTGGTAAGAGTCCCTGAGGGCT
TTCAAAGCCAAGATGATAAAGGCCAGGTCGTTTGCAACTAACATGCTGCG
TTTGTGGGTCGTGCGTTTTGTGGATACATAGAGCGCATACATGCATTTGT
GTGTGCTGCCGCACCGATTGTTCGTCTTTCTTTGATGGGATGCTTTCAAG
TTGGTTGAGGTGATCTGGTCTGTTTGTATGTCACGCGCCGCATGAATTGA
TGGCGCAGTAGAGACCATGGAAGTCGTCTATCGCGGTGAGCTTTGCGCTT
CGGCGAGGTCTCGTTCTTTCGGATGTGAACTGAACGCAGTCTGTACCTTT
AACTTGCCGCGAGCCTATACCGATCGCCACCTGACGGAAGGCTTTCCTCC
CCTGTCCTACTGCAGTGCGCGTCATATTCTGCCCGAAGCGTTGGTCGTAG
CATCTGCAAAACTAAATAGGTAGCTGCAGCACCAAACAGGTGCAACACGG
CTGTTGCTAATGTACGTACGCTACGTTGATGGGGAGGCACACGCGGAAAG
TGTGCGAGATCGCAGCTACAGAAGTTCCTCTCAACTGGCACGAGTTTGCT
GAATAAAGCAGACCCAGATGACATATTTCCGTTCTCCTACAGCCGTGAAA
TATGGGAAAGACAACGGGAGCAATGAGAAAACGGTATTGGGGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7728:5982..7374+

>mRNA_L-elsbetiae_contig7728.16676.1 ID=mRNA_L-elsbetiae_contig7728.16676.1|Name=mRNA_L-elsbetiae_contig7728.16676.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1056bp|location=Sequence derived from alignment at L-elsbetiae_contig7728:5982..7374+ (Laminarionema elsbetiae ELsaHSoW15)
ATGACGCTGAATAAGGGAATAAAAAGCTCGAGGGCCGCCTCTTGGCATGC
GGCGCTGCTCCTGCTTGTGCTGACGACGCTGCAACAGCTCAGCTTTTGTG
GGTCATTCCCGGCACCAAGATGTACGTCCAAAATGTTCAAGGCCCGATAT
CCGCTCGAAGGTGGACCGCCGCAGGTCAAACTGCACGTAGCCATCATTGT
GCAAGATACCGAGAGCATAGGCAACGACAATGAGCAGAAGCGTTGGGTGC
TGTTCGACTTCCTTCCCGCGGAACCCACCGCATTTACCACCACCCTGAAG
CTCCTCACGGCGCAAGACGTCCAAGGGAACCTGCGAGAGCGGGAGCTCCG
ATTTCTGCCTCCCGGGTCGGTGTGCGTGGGGCAAAGCGATGCGACGTTAG
AGGACATGAGAGGGTTTGTGGCAAGGTATCCCGATCGCTTATCGCTTGTC
TCGAACAACTGCGTTTCATTTGTCGATGCGTTTGTTGAGAGGCATCGCCT
GGAGCAGGAGGGCGGGCGTTACGAGTAGATGACGCTGAATAAGGGAATAA
AAAGCTCGAGGGCCGCCTCTTGGCATGCGGCGCTGCTCCTGCTTGTGCTG
ACGACGCTGCAACAGCTCAGCTTTTGTGGGTCATTCCCGGCACCAAGATG
TACGTCCAAAATGTTCAAGGCCCGATATCCGCTCGAAGGTGGACCGCCGC
AGGTCAAACTGCACGTAGCCATCATTGTGCAAGATACCGAGAGCATAGGC
AACGACAATGAGCAGAAGCGTTGGGTGCTGTTCGACTTCCTTCCCGCGGA
ACCCACCGCATTTACCACCACCCTGAAGCTCCTCACGGCGCAAGACGTCC
AAGGGAACCTGCGAGAGCGGGAGCTCCGATTTCTGCCTCCCGGGTCGGTG
TGCGTGGGGCAAAGCGATGCGACGTTAGAGGACATGAGAGGGTTTGTGGC
AAGGTATCCCGATCGCTTATCGCTTGTCTCGAACAACTGCGTTTCATTTG
TCGATGCGTTTGTTGAGAGGCATCGCCTGGAGCAGGAGGGCGGGCGTTAC
GAGTAG
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