mRNA_L-elsbetiae_contig7727.16674.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig7727.16674.1 vs. uniprot
Match: D8LE99_ECTSI (ATP-dependent Clp protease adaptor protein ClpS n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LE99_ECTSI) HSP 1 Score: 230 bits (586), Expect = 5.830e-75 Identity = 125/157 (79.62%), Postives = 141/157 (89.81%), Query Frame = 3 Query: 45 MFRLVQGIIIALMACATTAFVVPSASQTWIRPAATPTSVRTFAALKMGAGVAMPEIKTAGPSVGLVEKKEVSFETNIRPEDKFKVLLFNDNGNTREYVSRSLVQVVGLSEATAFHIMQQQANDNGMAQVGVWHQEMADAYSTSLKERGLIAETHPAD 515 MFR +Q +I+AL+A A+TAFVVP+ T +RPAA S R +AL M AGVAMPEIKTAGPS+G+++KKEVSFET+IRPEDK+KVLLFNDNGNTREYVSRSLVQVVGLSEATAFHIMQQ ANDNGMAQVG+WHQEMADAYSTSLKERGLIAETHPA+ Sbjct: 1 MFRPLQVLILALVASASTAFVVPA--WTAMRPAAA--SGRPISALNMAAGVAMPEIKTAGPSIGVLDKKEVSFETSIRPEDKYKVLLFNDNGNTREYVSRSLVQVVGLSEATAFHIMQQ-ANDNGMAQVGIWHQEMADAYSTSLKERGLIAETHPAE 152
BLAST of mRNA_L-elsbetiae_contig7727.16674.1 vs. uniprot
Match: A0A835ZJP8_9STRA (ATP-dependent Clp protease adaptor protein ClpS-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZJP8_9STRA) HSP 1 Score: 102 bits (254), Expect = 7.580e-25 Identity = 50/84 (59.52%), Postives = 64/84 (76.19%), Query Frame = 3 Query: 264 ETNIRPEDKFKVLLFNDNGNTREYVSRSLVQVVGLSEATAFHIMQQQANDNGMAQVGVWHQEMADAYSTSLKERGLIAETHPAD 515 E P DKFKV+LFNDNGNTREYV+RSLVQV+G++E+ A+ IM A+ NGMA VG+W+ E A+AYS LK RGL++E P + Sbjct: 51 EDQPSPADKFKVMLFNDNGNTREYVARSLVQVIGMTESDAYDIMTM-AHKNGMALVGIWNLERAEAYSDQLKTRGLVSEIFPVE 133
BLAST of mRNA_L-elsbetiae_contig7727.16674.1 vs. uniprot
Match: A0A7S2V4Q9_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V4Q9_9STRA) HSP 1 Score: 78.6 bits (192), Expect = 2.650e-15 Identity = 42/86 (48.84%), Postives = 55/86 (63.95%), Query Frame = 3 Query: 240 VEKKEVSFETNIRPEDKFKVLLFNDNGNTREYVSRSLVQVVGLSEATAFHIMQQQANDNGMAQVGVWHQEMADAYSTSLKERGLIA 497 +EKK + +++LLFNDN NTREYV+R L +VGLSE AF IM + A+ NGMA VG W E+A+AY+ SL GL + Sbjct: 69 IEKKGLDNSYQPANGGDYQILLFNDNMNTREYVARCLCTIVGLSEGKAFEIMLE-AHKNGMAVVGSWRYELAEAYNESLNRHGLAS 153
BLAST of mRNA_L-elsbetiae_contig7727.16674.1 vs. uniprot
Match: A0A7S2VY96_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2VY96_9STRA) HSP 1 Score: 77.4 bits (189), Expect = 1.350e-14 Identity = 44/100 (44.00%), Postives = 62/100 (62.00%), Query Frame = 3 Query: 216 TAGPSVGLVEKKEVSFETNIRPEDKFKVLLFNDNGNTREYVSRSLVQVVGLSEATAFHIMQQQANDNGMAQVGVWHQEMADAYSTSLKERGLIAETHPAD 515 + G VGLVEKK + + D ++V ++ND NTRE+VSR LVQ+VGLSE A+ M Q A+ NG+A VG + E A+ Y +L E G++ + P D Sbjct: 85 STGGGVGLVEKKAMK-DRERTGSDAWEVRIYNDVKNTREFVSRCLVQIVGLSETFAYQTMMQ-AHKNGLAAVGTYAFERAEMYHEALTENGIMCDMIPVD 182
BLAST of mRNA_L-elsbetiae_contig7727.16674.1 vs. uniprot
Match: A0A0M0LSS8_9EUKA (ATP-dependent clp protease adaptor protein n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0LSS8_9EUKA) HSP 1 Score: 75.5 bits (184), Expect = 3.950e-14 Identity = 63/144 (43.75%), Postives = 82/144 (56.94%), Query Frame = 3 Query: 99 AFVVPSASQTWIRPAATPTSV-RTFAALKMGAGVAMPEIKTAGPSVG---LVEKKEVSFETNIRPEDKFKVLLFNDNGNTREYVSRSLVQVV-GLSEATAFHIMQQQANDNGMAQVGVWHQEMADAYSTSLKERGLIAETHPAD 515 A VVP+ + + P TP S RT +L+ A VAM P V L K S + N + + K+KVLLFNDN N REYV+R LV + G+S+A A+ +MQ+ A+ GMA VGVW E+A+AY LK GLIA D Sbjct: 20 ALVVPARA---LMPEVTPASASRTVLSLRT-ARVAMQVDAPVRPKVDVPQLAPTKPSSDKDNEKAK-KYKVLLFNDNVNRREYVARILVGAIPGMSQADAYLVMQK-AHKQGMAVVGVWVFEVAEAYCDKLKSGGLIASVTEED 157
BLAST of mRNA_L-elsbetiae_contig7727.16674.1 vs. uniprot
Match: A0A7S4EG34_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4EG34_9STRA) HSP 1 Score: 73.2 bits (178), Expect = 3.160e-13 Identity = 45/129 (34.88%), Postives = 78/129 (60.47%), Query Frame = 3 Query: 153 TSVRTFAALKMGAGVAMPEIKTAGPSVGLVEKKEVSFETNIRPE--------DKFKVLLFNDNGNTREYVSRSLVQVVGLSEATAFHIMQQQANDNGMAQVGVWHQEMADAYSTSLKERGLIAETHPAD 515 TS + A+KM AG ++ AGP+V V++ V + N+ P + ++V ++ND NTRE+V+RSLVQ+ G+ E TA+ M A+ NG+A VG++ E+A+ Y+ +++G++++ P D Sbjct: 36 TSSHSNVAMKMAAGT----VERAGPAV--VDRPAV--KKNLAPSKQRHQEGGETWEVRIYNDGDNTREHVARSLVQITGMGEMTAYQTMMT-AHQNGIASVGLFAFEVAEVYNEGFRKQGIVSDIIPID 155
BLAST of mRNA_L-elsbetiae_contig7727.16674.1 vs. uniprot
Match: A0A7S4HUU8_9EUKA (Hypothetical protein n=1 Tax=Prymnesium polylepis TaxID=72548 RepID=A0A7S4HUU8_9EUKA) HSP 1 Score: 72.4 bits (176), Expect = 6.220e-13 Identity = 42/77 (54.55%), Postives = 53/77 (68.83%), Query Frame = 3 Query: 288 KFKVLLFNDNGNTREYVSRSLVQVV-GLSEATAFHIMQQQANDNGMAQVGVWHQEMADAYSTSLKERGLIAETHPAD 515 K+K+LLFNDN N REYV+R LV V S+A A+ +MQ+ A+ NGMA VGVW E+A+AY LK+ GLIA D Sbjct: 83 KWKLLLFNDNVNKREYVARVLVSSVPDFSQADAYKVMQK-AHQNGMAVVGVWVFEVAEAYCDKLKQGGLIASVTEED 158
BLAST of mRNA_L-elsbetiae_contig7727.16674.1 vs. uniprot
Match: A0A7S2R9I8_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2R9I8_9STRA) HSP 1 Score: 72.4 bits (176), Expect = 7.540e-13 Identity = 36/76 (47.37%), Postives = 52/76 (68.42%), Query Frame = 3 Query: 288 KFKVLLFNDNGNTREYVSRSLVQVVGLSEATAFHIMQQQANDNGMAQVGVWHQEMADAYSTSLKERGLIAETHPAD 515 +++VLLFND NT+EYV+R L+ V GLSE AF M Q A+ NGM +G+W +E+A+ ++ +L E GL+ P D Sbjct: 92 RYRVLLFNDPMNTKEYVARQLMTVAGLSENNAFDCMMQ-AHRNGMGLIGIWMREVAEHHTQTLTEAGLLVSMMPDD 166
BLAST of mRNA_L-elsbetiae_contig7727.16674.1 vs. uniprot
Match: A0A6U6GRI4_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A6U6GRI4_9STRA) HSP 1 Score: 72.4 bits (176), Expect = 1.060e-12 Identity = 42/119 (35.29%), Postives = 68/119 (57.14%), Query Frame = 3 Query: 183 MGAGVAMPEIKTAGPSVGLVEKKEVSFETNIRPE--------DKFKVLLFNDNGNTREYVSRSLVQVVGLSEATAFHIMQQQANDNGMAQVGVWHQEMADAYSTSLKERGLIAETHPAD 515 M A + +KT G ++++ +V + PE + ++V ++ND NTRE+V+R LVQ+VGL+E TA+ M A+ NG+A VG + E A+ Y +LK+ G+I + P D Sbjct: 65 MPATIERAPVKTGGGGPAVLDRPKVEERQSKSPEKERENVGNEAWEVRIYNDGMNTREFVARCLVQIVGLTEMTAYQTMMD-AHQNGIAVVGRYVYERAEMYHEALKKNGIICDLVPVD 182
BLAST of mRNA_L-elsbetiae_contig7727.16674.1 vs. uniprot
Match: A0A8J5XX93_DIALT (ClpS domain-containing protein n=2 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XX93_DIALT) HSP 1 Score: 70.5 bits (171), Expect = 2.550e-12 Identity = 44/102 (43.14%), Postives = 63/102 (61.76%), Query Frame = 3 Query: 195 VAMPEIKTAGPSVGLVEKKEVSFETNIRPEDKFKVLLFNDNGNTREYVSRSLVQVV-GLSEATAFHIMQQQANDNGMAQVGVWHQEMADAYSTSLKERGLIA 497 VAM ++ T PSV L K S + N + + K+K+LLFND N RE+V+R L V+ ++E TA+ +MQ+ A+ G A GVW E+A+AY L +GL A Sbjct: 39 VAMADVLTRPPSVQLAPTKPSSDQQNAKGK-KYKLLLFNDAVNKREFVARVLTSVIPDMTEPTAYTVMQK-AHTAGFAVCGVWMFELAEAYCDGLTSQGLTA 138 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7727.16674.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig7727.16674.1 >prot_L-elsbetiae_contig7727.16674.1 ID=prot_L-elsbetiae_contig7727.16674.1|Name=mRNA_L-elsbetiae_contig7727.16674.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=95bp MDQTCGYTDQRPNFRGAEDGCWRGHARDQNRRAFGGTCGEERSLVRDEHQback to top mRNA from alignment at L-elsbetiae_contig7727:2555..5947- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig7727.16674.1 ID=mRNA_L-elsbetiae_contig7727.16674.1|Name=mRNA_L-elsbetiae_contig7727.16674.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3393bp|location=Sequence derived from alignment at L-elsbetiae_contig7727:2555..5947- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig7727:2555..5947- >mRNA_L-elsbetiae_contig7727.16674.1 ID=mRNA_L-elsbetiae_contig7727.16674.1|Name=mRNA_L-elsbetiae_contig7727.16674.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=570bp|location=Sequence derived from alignment at L-elsbetiae_contig7727:2555..5947- (Laminarionema elsbetiae ELsaHSoW15)back to top |