mRNA_L-elsbetiae_contig772.16669.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig772.16669.1
Unique NamemRNA_L-elsbetiae_contig772.16669.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig772.16669.1 vs. uniprot
Match: D7G3E6_ECTSI (MYND-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G3E6_ECTSI)

HSP 1 Score: 491 bits (1264), Expect = 1.650e-170
Identity = 241/282 (85.46%), Postives = 255/282 (90.43%), Query Frame = 3
Query:  183 PEGATGAKEGKADVVSEEVCQSIKKGMRIVSDVEHTRTDGMVFKFELDLMYALAGEKATARAPPGLCLANCQRADCDKTEEPNGQTFCCCSKCGAKYCCRECQVSDWKKDHKAMCSQLREMRDGGTGGSRAPLDRQSVVARVLGRVRLYLCPFGVCHGEALGRGFVFVQQTPNPVLELEYLRPVNSNGRRLDRSIILHFLSMGEFVDAVLQDDFELGVIRSPLETAVDSYNPKTEIVVLFRARCGYMAVVVLPLVPEWSVCRQLGVEYKEKDALQLNLDDTD 1028
            P+   G K  K  VVS EVC+SIKKGMRI+SD+E TR DGMVFKFELDLMYALAGEKATARAPPGLCLA+CQRA C+KTEEP G+ FCCCSKCGAKYC RECQV DWKKDHKAMC QL+EMR G  GG RAPLDRQSVVARVLGRVRLYLCPF VCHGEALGRGFVFVQ TPNPVLELEYLRPVNSNGRRLDRSIILHFLSMGEFVDAVLQDDFELGVIRSPLE AV+SY+ K E+VVLFRARCGYMAVVV+PLVP W+VCRQLG+EYKEKDALQLNLDDTD
Sbjct:   21 PKEEEGVKGDKTAVVSGEVCESIKKGMRIISDIEKTRADGMVFKFELDLMYALAGEKATARAPPGLCLASCQRAACNKTEEPTGRPFCCCSKCGAKYCSRECQVIDWKKDHKAMCGQLKEMRGGDAGGGRAPLDRQSVVARVLGRVRLYLCPFAVCHGEALGRGFVFVQ-TPNPVLELEYLRPVNSNGRRLDRSIILHFLSMGEFVDAVLQDDFELGVIRSPLEAAVESYDTKAEMVVLFRARCGYMAVVVVPLVPGWAVCRQLGLEYKEKDALQLNLDDTD 301          
BLAST of mRNA_L-elsbetiae_contig772.16669.1 vs. uniprot
Match: A0A835Z3P7_9STRA (MYND-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3P7_9STRA)

HSP 1 Score: 304 bits (778), Expect = 2.540e-97
Identity = 151/283 (53.36%), Postives = 203/283 (71.73%), Query Frame = 3
Query:  177 SGPEGATGAKEG-KADVVSEEVCQSIKKGMRIVSDVEHTRTDGMVFKFELDLMYALAGEKATARAPPGLCLANCQRADCDKTEEPNGQTFCCCSKCGAKYCCRECQVSDWKKDHKAMCSQLREMRDGGTGGSRAPLDRQSVVARVLGRVRLYLCPFGVCHGEALGRGFVFVQQTPNPVLELEYLRPVNSNGRRLDRSIILHFLSMGEFVDAVLQDDFELGVIRSPLETAVDSYNPKTEIVVLFRARCGYMAVVVLPLVPEWSVCRQLGVEYKEKDALQLNLDD 1022
            S  + AT A  G K  + ++E+   +++G+ IV  +E  R DGMVF FE DL++ L+G+KA A+APPGL L  CQ+  C+ TE   G+ F  CS CG++YCCRECQVSDWK  HK MC+QL+ +  G      A +D++  V+R L +VRLYLCPF VCHG A+G GFVFVQ +PN +LEL Y+ PV S GR L RS++LH++S GEFV+AV+QDDFEL  +R+PLE A+ + + + E+VVL RARCGY+ VV +PLVPE +VCR L  +Y+ +DALQLNLD+
Sbjct:    2 SSAKAATAADGGSKKKIGTKELEAKVQEGLDIVQQIETGRADGMVFHFEGDLLFELSGDKAVAKAPPGLQLHKCQKPTCENTETMGGKPFNQCSGCGSRYCCRECQVSDWKSLHKPMCAQLKALSAG------AKVDKRDAVSRTLSKVRLYLCPFAVCHGSAIGPGFVFVQ-SPNSLLELNYMGPVTSAGRALQRSLVLHYMSPGEFVEAVMQDDFELMTVRTPLEAAIAAADAQREVVVLMRARCGYICVVTMPLVPEIAVCRALAGDYEGRDALQLNLDE 277          
BLAST of mRNA_L-elsbetiae_contig772.16669.1 vs. uniprot
Match: A0A448ZP53_9STRA (MYND-type domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZP53_9STRA)

HSP 1 Score: 151 bits (382), Expect = 6.760e-39
Identity = 82/199 (41.21%), Postives = 122/199 (61.31%), Query Frame = 3
Query:  450 CSKCG-AKYCCRECQVSDWKKD-HKAMCSQLREMRDGGTGGSRAPLD---RQSVVARVLGRVRLYLCPFGVCHGEALGRGFVFVQQTPNPVLELEYLRPVNSNGRRLDRSIILHFLSMGEFVDAVLQDDFELGVIRSPLETAVDSYNPKTEIVVLFRARCGYMAVVVLPLVPEWSVCRQLGVEY---KEKDALQLNLDD 1022
            C++CG A YC RECQ  DWK   HK  C     +       ++ PLD   ++++   +  R+R Y+CP+ V     LG GF+F+Q +   + +L    P +  GR + RS++LHFL++GEF   V +DDFEL ++R+PL+ AV+SY+P+ E+V+L R RCG MA+    LVP++ +C+QL  +Y       ALQLNLDD
Sbjct:   66 CARCGVAAYCSRECQAGDWKAGRHKMACPSYARV-------AKTPLDGDTKKAIRNELFARIRFYVCPYAVHRTAELGSGFLFLQ-SDRTLRDLSPYIPKDCTGRAIVRSVLLHFLTLGEFDSEVCKDDFELAMMRTPLKEAVESYDPEKEVVLLCRFRCGNMALGRAVLVPDYPICKQLAKDYYTGNTAGALQLNLDD 256          
BLAST of mRNA_L-elsbetiae_contig772.16669.1 vs. uniprot
Match: A0A7S0UGY3_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia delicatissima TaxID=44447 RepID=A0A7S0UGY3_9STRA)

HSP 1 Score: 151 bits (381), Expect = 6.970e-39
Identity = 80/199 (40.20%), Postives = 124/199 (62.31%), Query Frame = 3
Query:  450 CSKCG-AKYCCRECQVSDWKKD-HKAMCSQLREMRDGGTGGSRAPL---DRQSVVARVLGRVRLYLCPFGVCHGEALGRGFVFVQQTPNPVLELEYLRPVNSNGRRLDRSIILHFLSMGEFVDAVLQDDFELGVIRSPLETAVDSYNPKTEIVVLFRARCGYMAVVVLPLVPEWSVCRQLGVEYKEKD---ALQLNLDD 1022
            CSKCG A YC RECQ+ DWK   HK  C     +       ++APL    ++++   +  R+R Y+CP+ V     LGRGF+F+Q T   + ++    P +  G  + RS++LHFL++GEF   V + DFEL ++R+PL+ AV++Y+ + E+V+L R RCG M++    LVP++ +C++LG +Y  ++   ALQLNLDD
Sbjct:   56 CSKCGVAAYCSRECQIQDWKAGRHKMACPSYARV-------AKAPLCDKTKETIRNELFARIRFYVCPYAVFRTAELGRGFLFLQ-TDRTLEDMSLYIPKDCTGHTITRSVLLHFLTLGEFDSEVCRTDFELALMRTPLKEAVETYDTEQEVVLLCRYRCGNMSLGRAALVPDYRICKKLGQDYYSENSAGALQLNLDD 246          
BLAST of mRNA_L-elsbetiae_contig772.16669.1 vs. uniprot
Match: A0A1E7FEW3_9STRA (MYND-type domain-containing protein (Fragment) n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FEW3_9STRA)

HSP 1 Score: 148 bits (374), Expect = 4.070e-38
Identity = 80/201 (39.80%), Postives = 122/201 (60.70%), Query Frame = 3
Query:  453 SKCG----AKYCCRECQVSDWKKD-HKAMCSQLREMRDGGTGGSRAPLD---RQSVVARVLGRVRLYLCPFGVCHGEALGRGFVFVQQTPNPVLELEYLRPVNSNGRRLDRSIILHFLSMGEFVDAVLQDDFELGVIRSPLETAVDSYNPKTEIVVLFRARCGYMAVVVLPLVPEWSVCRQLGVEYKEKD---ALQLNLDD 1022
            SKCG    A YC R+CQ+SDWK   HK  C     +       ++ P+    +Q +   +  R+R Y+CP+ V     LGRGF+F+Q T   + +L    P +  G  + RSI+LHFL++GEF   V ++DFEL ++R+PL+ A+DSY  + E+V+L R RCG M++    LVP++ +C++LG +Y  ++   A+QLNLDD
Sbjct:   34 SKCGKCQVAAYCSRDCQMSDWKTGRHKMACPSYARV-------AQTPISDKTKQEIRNELFQRIRFYVCPYAVLRTSELGRGFLFLQ-TDKTLQDLSVYIPKDCTGHTVTRSILLHFLTLGEFDSEVCKEDFELAMMRTPLKDAIDSYETEKEVVILCRFRCGNMSLGKAILVPDYGICKKLGQDYYAENPAGAVQLNLDD 226          
BLAST of mRNA_L-elsbetiae_contig772.16669.1 vs. uniprot
Match: A0A7S2R2L0_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2R2L0_9STRA)

HSP 1 Score: 143 bits (361), Expect = 1.280e-35
Identity = 85/213 (39.91%), Postives = 125/213 (58.69%), Query Frame = 3
Query:  450 CSKCG-AKYCCRECQVSDWKKD------HKAMCSQLREMRDGGTGGSRAPLDRQSVVARVLGRVRLYLCPFGVCHGEALGRGFVFVQQTPNPVLELEY---LRPVNSNGRRL------DRSIILHFLSMGEFVDAVLQDDFELGVIRSPLETAVDSYNPKTEIVVLFRARCGYMAVVVLPLVPEWSVCRQLGVEY------KEKDALQLNLDD 1022
            CSKC  A+YC R+CQV+DWKK       HK  C+ L+  R G      +P D+ S    ++ R+R Y CP+ V     LGRGF+F+Q T + + E+     L P+++            RS++LH+L++GEF   V +DDFEL  +R  L+ AVDS++ + ++VVL R RCG++AV   PLVP++ +C+ LG +Y          A+QLNLDD
Sbjct:   72 CSKCHVARYCSRDCQVADWKKSPNGGTAHKFTCAALK--RVGIHMQITSPDDQASARQDIVFRIRFYACPYAVNKSITLGRGFLFLQGT-STLAEMSLPTTLNPLHNXXXXXXXXXVKQRSVLLHYLTLGEFDSEVCRDDFELATVRDRLKQAVDSHDIEKDMVVLMRFRCGHVAVGTAPLVPDYGLCKSLGQQYYGTGEGASSGAIQLNLDD 281          
BLAST of mRNA_L-elsbetiae_contig772.16669.1 vs. uniprot
Match: A0A7S0F684_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7S0F684_9STRA)

HSP 1 Score: 143 bits (360), Expect = 1.310e-35
Identity = 82/212 (38.68%), Postives = 126/212 (59.43%), Query Frame = 3
Query:  408 CDKTEEPNGQTFCCCSKCG-AKYCCRECQVSDWKKD-HKAMCSQLREMRDGGTGGSRAPLDRQSVVARVLGRVRLYLCPFGVCHGEALGRGFVFVQQTPNPVLELEYLRPVNSNGRRLDR-SIILHFLSMGEFVDAVLQDDFELGVIRSPLETAVDSYNPKTEIVVLFRARCGYMAVVVLPLVPEWSVCRQLGVEYKEKD----ALQLNLDD 1022
            C K E  N +    CSKC  AKYC R+CQV+DWK   HK +C   + + D     + A   + +V A +  R+R Y CP+ V     LG+GF+FVQ   + + +L    P +  G  + R SI++HFL++GE+   V +DDFE+   R+ L   V+ Y+ + E+V+L+R RCG++AV    LVP++ +C+QLG +Y + +    A+QLNLD+
Sbjct:   63 CGKHESENAKLSK-CSKCQTAKYCSRDCQVNDWKDGRHKLVCKSYQRLNDDFDNNADA---KAAVRAELYARIRFYACPYAVHKTTQLGKGFLFVQSNMS-LRDLSIPIPKDVTGVAMPRRSILMHFLTLGEYDSEVCRDDFEMAEARTKLSQIVEEYDEEKEVVLLYRMRCGHVAVGRAVLVPDYGICKQLGRDYYDSNNSAGAVQLNLDE 269          
BLAST of mRNA_L-elsbetiae_contig772.16669.1 vs. uniprot
Match: A0A1Z5JUW9_FISSO (MYND-type domain-containing protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JUW9_FISSO)

HSP 1 Score: 142 bits (357), Expect = 1.330e-35
Identity = 84/197 (42.64%), Postives = 122/197 (61.93%), Query Frame = 3
Query:  450 CSKCG-AKYCCRECQVSDWKKDHKAMCSQLREMRDGGTGGSRAPLDRQSVVAR--VLGRVRLYLCPFGVCHGEALGRGFVFVQQTPNPVLELEYLRPVNSNGRRLDRSIILHFLSMGEFVDAVLQDDFELGVIRSPLETAVDSYNPKTEIVVLFRARCGYMAVVVLPLVPEWSVCRQLGVEYKEK---DALQLNLDD 1022
            CS+C  A YC +ECQ+ DWK+ HK  C+  +  R    G    P D  S  AR  VL ++RLY  P+ V   +ALGRGF+F+Q T       + L  +   GR  +RS++LH+L++GE+   V +DDFEL  +R+ L+ AV+ Y+ + ++VVL R RCG++AV ++PL  E++VC QLG EY +     AL+L LDD
Sbjct:   48 CSQCHVATYCSKECQIQDWKQRHKKYCAAYQ--RIDAQGRWNTP-DDDSAHARHHVLHQIRLYAMPYAVYQMQALGRGFLFIQST-------QTLAALTLPGR--NRSVLLHYLTLGEYDAEVCRDDFELTAVRTCLQKAVNDYDAQQQMVVLMRFRCGHVAVGIIPLSLEFAVCLQLGKEYYQNVTAGALELQLDD 232          
BLAST of mRNA_L-elsbetiae_contig772.16669.1 vs. uniprot
Match: A0A7S2A9V4_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2A9V4_TRICV)

HSP 1 Score: 140 bits (354), Expect = 9.180e-35
Identity = 84/197 (42.64%), Postives = 114/197 (57.87%), Query Frame = 3
Query:  465 AKYCCRECQVSDWKKD----HKAMCSQLREMRDGGTGGSRAPLDRQSVVARVLGRVRLYLCPFGVCHGEALGRGFVFVQQTPNPVLELEYLRPVNSNGRRL--DRSIILHFLSMGEFVDAVLQDDFELGVIRSPLETAVDSYNPKTEIVVLFRARCGYMAVVVLPLVPEWSVCRQLGVEYKE-----KDALQLNLDD 1022
            A YC R+CQVSDWK      HK  C+  R  R G     R   D+ +    VL RVR Y  P+ V     LGRGF+FVQ     + EL    P   +GR L  +RS+++HFL+MGE+   V +DDFE+  +R  L+ AV +Y+ + E  VL R RCG++AV +  LVPE+ VC+ LG EY +     + ++QLNLDD
Sbjct:   75 APYCSRDCQVSDWKSGTGGGHKHHCASYR--RVGTEFALRTDDDKAAARDEVLRRVRFYAFPYAVHRSSTLGRGFLFVQSGCT-LAELSLPNPKRPDGRPLGRERSVLMHFLTMGEYDLEVCRDDFEMASVRGELKDAVKAYDERKEAAVLVRFRCGHVAVGLATLVPEYGVCKALGREYYQGTVGAEGSVQLNLDD 268          
BLAST of mRNA_L-elsbetiae_contig772.16669.1 vs. uniprot
Match: A0A1Z5K1R0_FISSO (MYND-type domain-containing protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K1R0_FISSO)

HSP 1 Score: 134 bits (336), Expect = 2.370e-32
Identity = 79/202 (39.11%), Postives = 118/202 (58.42%), Query Frame = 3
Query:  447 CCSKCGAKYCCRECQVSDWKKDHKAMCSQLREMRDGG-----TGGSRAPLDRQSVVAR--VLGRVRLYLCPFGVCHGEALGRGFVFVQQTPNPVLELEYLRPVNSNGRRLDRSIILHFLSMGEFVDAVLQDDFELGVIRSPLETAVDSYNPKTEIVVLFRARCGYMAVVVLPLVPEWSVCRQLGVEYKEK---DALQLNLDD 1022
            C     A YC +ECQ+ DW+K HK  C+  + +   G            +D  SV+AR  V  ++RLY  P+     + LGRGF+F+Q T       + L  +   GR  +RS++LH+L++GE+   V +DDFEL  +R+ L+ AV+ Y+ + ++VVL R RCG++AV V+PL  E++VC QLG EY +     AL+L LDD
Sbjct:   63 CSQXXXAIYCSKECQIQDWRKKHKKYCAAYQRIDTHGHWKTPDNDVDDDVDDYSVLARHHVWHQIRLYAMPYAAHQMQTLGRGFLFLQST-------QTLVALTLPGR--NRSVLLHYLTLGEYDAEVCRDDFELTAVRTCLQKAVNDYDAQQQMVVLMRFRCGHVAVGVIPLSLEYAVCLQLGKEYYQNVTAGALELQLDD 255          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig772.16669.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
D7G3E6_ECTSI1.650e-17085.46MYND-type domain-containing protein n=2 Tax=Ectoca... [more]
A0A835Z3P7_9STRA2.540e-9753.36MYND-type domain-containing protein n=1 Tax=Tribon... [more]
A0A448ZP53_9STRA6.760e-3941.21MYND-type domain-containing protein n=1 Tax=Pseudo... [more]
A0A7S0UGY3_9STRA6.970e-3940.20Hypothetical protein n=1 Tax=Pseudo-nitzschia deli... [more]
A0A1E7FEW3_9STRA4.070e-3839.80MYND-type domain-containing protein (Fragment) n=1... [more]
A0A7S2R2L0_9STRA1.280e-3539.91Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]
A0A7S0F684_9STRA1.310e-3538.68Hypothetical protein n=1 Tax=Craspedostauros austr... [more]
A0A1Z5JUW9_FISSO1.330e-3542.64MYND-type domain-containing protein n=1 Tax=Fistul... [more]
A0A7S2A9V4_TRICV9.180e-3542.64Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
A0A1Z5K1R0_FISSO2.370e-3239.11MYND-type domain-containing protein n=1 Tax=Fistul... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig772contigL-elsbetiae_contig772:19228..22257 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score491.9
Seed ortholog evalue2.2e-136
Seed eggNOG ortholog2880.D7G3E6
Hectar predicted targeting categoryother localisation
EggNOG OGs2CYFZ@1,2S44W@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-00_006550.1
Exons5
Model size1490
Cds size942
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816857.7711957-UTR-L-elsbetiae_contig772:19227..196861622816857.7711957-UTR-L-elsbetiae_contig772:19227..19686Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig772 19228..19686 -
1691683866.0668826-UTR-L-elsbetiae_contig772:19227..196861691683866.0668826-UTR-L-elsbetiae_contig772:19227..19686Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig772 19228..19686 -
1622816857.8460076-UTR-L-elsbetiae_contig772:22168..222571622816857.8460076-UTR-L-elsbetiae_contig772:22168..22257Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig772 22169..22257 -
1691683866.1348135-UTR-L-elsbetiae_contig772:22168..222571691683866.1348135-UTR-L-elsbetiae_contig772:22168..22257Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig772 22169..22257 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816857.7827423-CDS-L-elsbetiae_contig772:19686..198841622816857.7827423-CDS-L-elsbetiae_contig772:19686..19884Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig772 19687..19884 -
1691683866.0786028-CDS-L-elsbetiae_contig772:19686..198841691683866.0786028-CDS-L-elsbetiae_contig772:19686..19884Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig772 19687..19884 -
1622816857.7979672-CDS-L-elsbetiae_contig772:20217..203611622816857.7979672-CDS-L-elsbetiae_contig772:20217..20361Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig772 20218..20361 -
1691683866.0882926-CDS-L-elsbetiae_contig772:20217..203611691683866.0882926-CDS-L-elsbetiae_contig772:20217..20361Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig772 20218..20361 -
1622816857.8103135-CDS-L-elsbetiae_contig772:20935..211331622816857.8103135-CDS-L-elsbetiae_contig772:20935..21133Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig772 20936..21133 -
1691683866.0986366-CDS-L-elsbetiae_contig772:20935..211331691683866.0986366-CDS-L-elsbetiae_contig772:20935..21133Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig772 20936..21133 -
1622816857.8224251-CDS-L-elsbetiae_contig772:21443..215961622816857.8224251-CDS-L-elsbetiae_contig772:21443..21596Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig772 21444..21596 -
1691683866.109131-CDS-L-elsbetiae_contig772:21443..215961691683866.109131-CDS-L-elsbetiae_contig772:21443..21596Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig772 21444..21596 -
1622816857.835124-CDS-L-elsbetiae_contig772:21919..221681622816857.835124-CDS-L-elsbetiae_contig772:21919..22168Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig772 21920..22168 -
1691683866.1225102-CDS-L-elsbetiae_contig772:21919..221681691683866.1225102-CDS-L-elsbetiae_contig772:21919..22168Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig772 21920..22168 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig772.16669.1prot_L-elsbetiae_contig772.16669.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig772 19687..22168 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig772.16669.1

>prot_L-elsbetiae_contig772.16669.1 ID=prot_L-elsbetiae_contig772.16669.1|Name=mRNA_L-elsbetiae_contig772.16669.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=314bp
MNEANGSGVAPAVVVEDVRESIEGMEVKGSGPEGATGAKEGKADVVSEEV
CQSIKKGMRIVSDVEHTRTDGMVFKFELDLMYALAGEKATARAPPGLCLA
NCQRADCDKTEEPNGQTFCCCSKCGAKYCCRECQVSDWKKDHKAMCSQLR
EMRDGGTGGSRAPLDRQSVVARVLGRVRLYLCPFGVCHGEALGRGFVFVQ
QTPNPVLELEYLRPVNSNGRRLDRSIILHFLSMGEFVDAVLQDDFELGVI
RSPLETAVDSYNPKTEIVVLFRARCGYMAVVVLPLVPEWSVCRQLGVEYK
EKDALQLNLDDTD*
back to top

mRNA from alignment at L-elsbetiae_contig772:19228..22257-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig772.16669.1 ID=mRNA_L-elsbetiae_contig772.16669.1|Name=mRNA_L-elsbetiae_contig772.16669.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3030bp|location=Sequence derived from alignment at L-elsbetiae_contig772:19228..22257- (Laminarionema elsbetiae ELsaHSoW15)
GTCGGGGCCATATTCTCGCGTCTGTCCTCTCCAAGACACGCTCGCGACCC TCTTTCTTCCTTTCTCTTGTTCTCTTTCGCCACACAACGATGAATGAGGC TAATGGCAGTGGTGTGGCGCCTGCCGTGGTCGTAGAGGACGTACGCGAAA GCATTGAGGGTATGGAAGTCAAGGGCAGTGGACCAGAGGGCGCTACTGGC GCTAAAGAGGGAAAGGCTGATGTGGTATCTGAGGAGGTGTGCCAGAGCAT TAAGAAAGGCATGCGAATCGTGAGTGATGTGGAGCACACACGCACCGACG GCATGGTTTTCAAATTCGAGCTGGATTTGATGTATGCGGTGAGCAAGAGA AAGTTGAAGCCTACAATAATAGTCTAGACTACAAACGAGGACTGCTGTGC ATGTATTCCTAGGGATCAAGGGTGTGGATGATCCTTGCTGCGGGTGAAGC TCTACCCGTTGAGCTAACCCCTATATGCAGATACCCCCAGTTGTGGTCGC CAAACATTGACGGGTCAGTCCGATGCAACACAGCAGTGGTAAATGTCGTT ATCGCCACCAAGACGCACAGCCCCTCCCTTCTAGACTACATGTACATACG TACAGACCAACATGCGTACAGACCAACATGTATGTACGTACCGCTCCCTT GTTGTCTTCAGTTGGCCGGGGAGAAGGCTACCGCGCGCGCTCCGCCTGGG TTGTGCCTGGCGAACTGCCAGCGGGCCGACTGCGACAAGACGGAGGAGCC CAACGGGCAGACGTTTTGCTGCTGTTCAAAGTGCGGCGCCAAATACTGTT GTCGGGAGTGCCAGGTACGACTCCCCTCGCCAACGCCCCCTCGCATGCAT ACATGCGTCGAAGTATGTAGCAGTTTGCTAACGGGGCGCTGTGGTGTCTG CCCGTTGTTTATTGGTACCTATTCTATACCTTTTTATCCATCACCAGCGG CCTCGCTCTCATGCATGCCACCGTCCGCCACGAGCGTGCGGTCTTACACA GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGAGAGA ACGCATCGGGGCACCGCTCGCTCTCGTCTTCTACTGCTGGTGTGTTCGCT TCACCTCAAAATTATATGTCTCAGGTGAGCGACTGGAAGAAGGACCACAA GGCCATGTGCAGCCAGCTGAGAGAAATGCGGGACGGGGGCACGGGGGGCA GCAGGGCGCCGCTCGACAGACAGAGCGTGGTGGCAAGGGTTCTCGGTAGG GTCCGGCTCTACCTGTGCCCGTTTGGCGTCTGCCACGGGGAGGCCCTCGG TCGAGGCTTCGTCTTCGTGCAGGTGCGGTTTTACTCTACGTTTTTCGTAG TCAACACAACACCGTAGTTTTCCCCAGTCGGCACACCACCCTGGCACGTA CAGAAAAGTCGGTACCCTTGCCCTCTTGGAACCTTGGAAACCGCCGCGTC TGTTTCCGCCCGCGTGCTGCCGTCACACTGCCCTCGTGCGTGGCACGGAG CAGTATTGATGCACGCTGCATGCTTCACTGTATAGGAGGTGGACGGTGTG ATTGACACATGTATGTCTGCACCTCGAACACAGCAGTAACTGCGAGCGTG CCGTCTCAATCGTGGACGGAGGGAGCGCTAATTTACATGCTCTGCATGGC CTCCTAGGTGTGTGGGGGGCGGGCGGCATGTTCCACACGGCTCTGTTTGC TGTCCCCCTCGCAAGAGTTCCGTGTTTGGGAATCTGCGCAGCAGCCAGCG AAATTGATCGCACACCCGGTTGTGTGAGTGATGCCACTACAGTACCACGT AGGGGTGGTGGCCCTCTGTCACGGCGGTCTTCGATCGACCACACAGCCAT CCCGCCCGATCCCACCGCCTGTTTGCTACATGCGCCGTGTGGAGAGCAGA CTCCGAATCCCGTGCTTGAGCTGGAGTACTTGCGCCCCGTCAACAGCAAC GGGCGTAGGCTTGACCGCAGCATCATCTTGCACTTCCTGAGCATGGGGGA GTTCGTGGATGCCGTTTTGCAAGACGACTTCGAGCTCGGAGTGAGTTTCG CGTCCCGTATTTATTTGTTCCTCTCTCAGGTCTATCAGGTCTATAGGTAT TTTTTTGGCTGGTTGCTGGTTTATTCTGCCCACCCATACCCCTCTTGCCA ACCGATCGCCCCGTTTGTAACGGGCCGGTTTGTGTAGGCTTCCGGTCGGT ACGTACCGTAGTTTGCCGCGCCTACAACTTGAAGTATGTATATTGTAGCA ACTGTTTTTCCGCGTCTATTGTACATACAACATACAAATATGTAGAGTAG CTGTCAACCATGGACGCCGAACAAGAGGACGCACACCCGCAACCCAGCAC AATCATGCGCGTTCCGCAAGCAGGTGATTCGGAGCCCGCTCGAGACCGCC GTGGACAGTTACAACCCCAAAACGGAGATCGTGGTGCTCTTCAGGGCCCG CTGCGGCTACATGGCGGTGGTGGTGCTGCCCCTCGTGCCGGAGTGGTCGG TGTGCCGCCAGCTCGGCGTGGAGTACAAGGAAAAGGACGCGCTGCAGCTC AACCTCGATGACACAGATTGACGGACGAGTCTCCTGCATACCACTTGCAG TTTTTCAAAGCTGCAAATCGATGGCGAAACACGATGTTGATTTGCTCTCG ACAGATGGGCGCACTTCTACGCATGAGCAGGATTGGCAAGCTGTGCTTTC TCGGATTGACCCACTTCTCGCGTGCTGCTTGTAGGATCGGAAGTTTTTTT TTTATCGGAAGATGGTGACAGGTTATGAAGGTTGTTCTAGGCGACCACCA GACAGACAATACCCCTTCGGTCAATATGTAGCTGAGAAGTTAATGGCAGG GCACGCCAATCAATGCATTGTTCTCGTGCATGTATGTGTATCAATGCGTC GTGTGAGCGAAAGTCGGACATGGTTACCGCGAGCCAGCTTCAGCAAAAAG CAACCAAACTAGGTACCCCGATTGAGGCTGATCGTGCAAGGCGTTCCCCC TTCCCGGAAGGAACCACGCGAGAAATTTCC
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig772:19228..22257-

>mRNA_L-elsbetiae_contig772.16669.1 ID=mRNA_L-elsbetiae_contig772.16669.1|Name=mRNA_L-elsbetiae_contig772.16669.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1884bp|location=Sequence derived from alignment at L-elsbetiae_contig772:19228..22257- (Laminarionema elsbetiae ELsaHSoW15)
ATGAATGAGGCTAATGGCAGTGGTGTGGCGCCTGCCGTGGTCGTAGAGGA
CGTACGCGAAAGCATTGAGGGTATGGAAGTCAAGGGCAGTGGACCAGAGG
GCGCTACTGGCGCTAAAGAGGGAAAGGCTGATGTGGTATCTGAGGAGGTG
TGCCAGAGCATTAAGAAAGGCATGCGAATCGTGAGTGATGTGGAGCACAC
ACGCACCGACGGCATGGTTTTCAAATTCGAGCTGGATTTGATGTATGCGA
TGAATGAGGCTAATGGCAGTGGTGTGGCGCCTGCCGTGGTCGTAGAGGAC
GTACGCGAAAGCATTGAGGGTATGGAAGTCAAGGGCAGTGGACCAGAGGG
CGCTACTGGCGCTAAAGAGGGAAAGGCTGATGTGGTATCTGAGGAGGTGT
GCCAGAGCATTAAGAAAGGCATGCGAATCGTGAGTGATGTGGAGCACACA
CGCACCGACGGCATGGTTTTCAAATTCGAGCTGGATTTGATGTATGCGTT
GGCCGGGGAGAAGGCTACCGCGCGCGCTCCGCCTGGGTTGTGCCTGGCGA
ACTGCCAGCGGGCCGACTGCGACAAGACGGAGGAGCCCAACGGGCAGACG
TTTTGCTGCTGTTCAAAGTGCGGCGCCAAATACTGTTGTCGGGAGTGCCA
GTTGGCCGGGGAGAAGGCTACCGCGCGCGCTCCGCCTGGGTTGTGCCTGG
CGAACTGCCAGCGGGCCGACTGCGACAAGACGGAGGAGCCCAACGGGCAG
ACGTTTTGCTGCTGTTCAAAGTGCGGCGCCAAATACTGTTGTCGGGAGTG
CCAGGTGAGCGACTGGAAGAAGGACCACAAGGCCATGTGCAGCCAGCTGA
GAGAAATGCGGGACGGGGGCACGGGGGGCAGCAGGGCGCCGCTCGACAGA
CAGAGCGTGGTGGCAAGGGTTCTCGGTAGGGTCCGGCTCTACCTGTGCCC
GTTTGGCGTCTGCCACGGGGAGGCCCTCGGTCGAGGCTTCGTCTTCGTGC
AGGTGAGCGACTGGAAGAAGGACCACAAGGCCATGTGCAGCCAGCTGAGA
GAAATGCGGGACGGGGGCACGGGGGGCAGCAGGGCGCCGCTCGACAGACA
GAGCGTGGTGGCAAGGGTTCTCGGTAGGGTCCGGCTCTACCTGTGCCCGT
TTGGCGTCTGCCACGGGGAGGCCCTCGGTCGAGGCTTCGTCTTCGTGCAG
CAGACTCCGAATCCCGTGCTTGAGCTGGAGTACTTGCGCCCCGTCAACAG
CAACGGGCGTAGGCTTGACCGCAGCATCATCTTGCACTTCCTGAGCATGG
GGGAGTTCGTGGATGCCGTTTTGCAAGACGACTTCGAGCTCGGACAGACT
CCGAATCCCGTGCTTGAGCTGGAGTACTTGCGCCCCGTCAACAGCAACGG
GCGTAGGCTTGACCGCAGCATCATCTTGCACTTCCTGAGCATGGGGGAGT
TCGTGGATGCCGTTTTGCAAGACGACTTCGAGCTCGGAGTGATTCGGAGC
CCGCTCGAGACCGCCGTGGACAGTTACAACCCCAAAACGGAGATCGTGGT
GCTCTTCAGGGCCCGCTGCGGCTACATGGCGGTGGTGGTGCTGCCCCTCG
TGCCGGAGTGGTCGGTGTGCCGCCAGCTCGGCGTGGAGTACAAGGAAAAG
GACGCGCTGCAGCTCAACCTCGATGACACAGATTGAGTGATTCGGAGCCC
GCTCGAGACCGCCGTGGACAGTTACAACCCCAAAACGGAGATCGTGGTGC
TCTTCAGGGCCCGCTGCGGCTACATGGCGGTGGTGGTGCTGCCCCTCGTG
CCGGAGTGGTCGGTGTGCCGCCAGCTCGGCGTGGAGTACAAGGAAAAGGA
CGCGCTGCAGCTCAACCTCGATGACACAGATTGA
back to top